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Sed0001412 (gene) of Chayote v1 genome

Gene IDSed0001412
OrganismSechium edule (Chayote v1)
DescriptionLysM domain-containing protein
Genome locationLG04:35966878..35967383
RNA-Seq ExpressionSed0001412
SyntenySed0001412
Gene Ontology termsNA
InterPro domainsIPR018392 - LysM domain
IPR036779 - LysM domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6574776.1 hypothetical protein SDJN03_25415, partial [Cucurbita argyrosperma subsp. sororia]1.0e-2775.86Show/hide
Query:  MASSTLCYSVFLFTALILLASAESGNNPPCDEIYVVGEGETLHTISAKCSDPFIVDENPQIQDSDDVFPGLIIKITPAINSRKLFFR
        MASST C SVF+  AL+LLASA+SG   PCD+IY+V EGE+LH+ISAKC DPFIVD NPQIQDSDDVFPGL+IKITP++NSRKL FR
Subjt:  MASSTLCYSVFLFTALILLASAESGNNPPCDEIYVVGEGETLHTISAKCSDPFIVDENPQIQDSDDVFPGLIIKITPAINSRKLFFR
KAG7013356.1 hypothetical protein SDJN02_23520, partial [Cucurbita argyrosperma subsp. argyrosperma]2.1e-2877.01Show/hide
Query:  MASSTLCYSVFLFTALILLASAESGNNPPCDEIYVVGEGETLHTISAKCSDPFIVDENPQIQDSDDVFPGLIIKITPAINSRKLFFR
        MASST C SVF+F AL+LLASA+SG   PCD+IY+V EGE+LH+ISAKC DPFIVD NPQIQDSDDVFPGL+IKITP++NSRKL FR
Subjt:  MASSTLCYSVFLFTALILLASAESGNNPPCDEIYVVGEGETLHTISAKCSDPFIVDENPQIQDSDDVFPGLIIKITPAINSRKLFFR
KGN46208.1 hypothetical protein Csa_005039 [Cucumis sativus]4.7e-2069.23Show/hide
Query:  YSVFLFTALILLASAESGNNPPCDEIYVVGEGETLHTISAKCSDPFIVDENPQIQDSDDVFPGLIIKITPA-INSRKL
        +SVF+ T + L+    S  + PCD+IYVV EGETLHTISAKC DPFIVD NP IQDSDDVFPGL+I+ITP  INSRKL
Subjt:  YSVFLFTALILLASAESGNNPPCDEIYVVGEGETLHTISAKCSDPFIVDENPQIQDSDDVFPGLIIKITPA-INSRKL
XP_022959284.1 uncharacterized protein LOC111460313 [Cucurbita moschata]2.1e-2877.01Show/hide
Query:  MASSTLCYSVFLFTALILLASAESGNNPPCDEIYVVGEGETLHTISAKCSDPFIVDENPQIQDSDDVFPGLIIKITPAINSRKLFFR
        MASST C SVF+F AL+LLASA+SG   PCD+IY+V EGE+LH+ISAKC DPFIVD NPQIQDSDDVFPGL+IKITP++NSRKL FR
Subjt:  MASSTLCYSVFLFTALILLASAESGNNPPCDEIYVVGEGETLHTISAKCSDPFIVDENPQIQDSDDVFPGLIIKITPAINSRKLFFR
XP_023006696.1 uncharacterized protein LOC111499354 [Cucurbita maxima]1.9e-2978.16Show/hide
Query:  MASSTLCYSVFLFTALILLASAESGNNPPCDEIYVVGEGETLHTISAKCSDPFIVDENPQIQDSDDVFPGLIIKITPAINSRKLFFR
        MASS  CYSVF+F AL+LLASA+SG   PCD+IY+V EGE+LH+ISAKC DPFIVD NPQIQDSDDVFPGL+IKITP++NSRKLFFR
Subjt:  MASSTLCYSVFLFTALILLASAESGNNPPCDEIYVVGEGETLHTISAKCSDPFIVDENPQIQDSDDVFPGLIIKITPAINSRKLFFR
TrEMBL top hitse value%identityAlignment
A0A0A0K9P3 LysM domain-containing protein2.3e-2069.23Show/hide
Query:  YSVFLFTALILLASAESGNNPPCDEIYVVGEGETLHTISAKCSDPFIVDENPQIQDSDDVFPGLIIKITPA-INSRKL
        +SVF+ T + L+    S  + PCD+IYVV EGETLHTISAKC DPFIVD NP IQDSDDVFPGL+I+ITP  INSRKL
Subjt:  YSVFLFTALILLASAESGNNPPCDEIYVVGEGETLHTISAKCSDPFIVDENPQIQDSDDVFPGLIIKITPA-INSRKL
A0A2G5CAM1 LysM domain-containing protein1.6e-1865.38Show/hide
Query:  LFTALILL----------ASAESGNNPPCDEIYVVGEGETLHTISAKCSDPFIVDENPQIQDSDDVFPGLIIKITPAI
        LF AL+LL          +S    NN PCDEIYVVGEGETLHTIS KC DP+IV+ENP I D DDVFPGL+IKITP I
Subjt:  LFTALILL----------ASAESGNNPPCDEIYVVGEGETLHTISAKCSDPFIVDENPQIQDSDDVFPGLIIKITPAI
A0A5D3DLK6 Uncharacterized protein6.6e-2067.95Show/hide
Query:  YSVFLFTALILLASAESGNNPPCDEIYVVGEGETLHTISAKCSDPFIVDENPQIQDSDDVFPGLIIKITPA-INSRKL
        +SVF+ T + L+    S  + PC++IYVV EGETLHTISAKC DPFIVD NP IQDSDDVFPGL+I+ITP  INSRKL
Subjt:  YSVFLFTALILLASAESGNNPPCDEIYVVGEGETLHTISAKCSDPFIVDENPQIQDSDDVFPGLIIKITPA-INSRKL
A0A6J1H7L7 uncharacterized protein LOC1114603131.0e-2877.01Show/hide
Query:  MASSTLCYSVFLFTALILLASAESGNNPPCDEIYVVGEGETLHTISAKCSDPFIVDENPQIQDSDDVFPGLIIKITPAINSRKLFFR
        MASST C SVF+F AL+LLASA+SG   PCD+IY+V EGE+LH+ISAKC DPFIVD NPQIQDSDDVFPGL+IKITP++NSRKL FR
Subjt:  MASSTLCYSVFLFTALILLASAESGNNPPCDEIYVVGEGETLHTISAKCSDPFIVDENPQIQDSDDVFPGLIIKITPAINSRKLFFR
A0A6J1KYG6 uncharacterized protein LOC1114993549.1e-3078.16Show/hide
Query:  MASSTLCYSVFLFTALILLASAESGNNPPCDEIYVVGEGETLHTISAKCSDPFIVDENPQIQDSDDVFPGLIIKITPAINSRKLFFR
        MASS  CYSVF+F AL+LLASA+SG   PCD+IY+V EGE+LH+ISAKC DPFIVD NPQIQDSDDVFPGL+IKITP++NSRKLFFR
Subjt:  MASSTLCYSVFLFTALILLASAESGNNPPCDEIYVVGEGETLHTISAKCSDPFIVDENPQIQDSDDVFPGLIIKITPAINSRKLFFR
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G52790.1 peptidoglycan-binding LysM domain-containing protein1.1e-1658.06Show/hide
Query:  LLASAESGNNPPCDEIYVVGEGETLHTISAKCSDPFIVDENPQIQDSDDVFPGLIIKITPAI
        ++ +  S   P CDEIY V EGETL TIS KC DP+IV+ NP I D DD+FPGL+I+ITP++
Subjt:  LLASAESGNNPPCDEIYVVGEGETLHTISAKCSDPFIVDENPQIQDSDDVFPGLIIKITPAI
AT4G25433.1 peptidoglycan-binding LysM domain-containing protein1.9e-1672.34Show/hide
Query:  PCDEIYVVGEGETLHTISAKCSDPFIVDENPQIQDSDDVFPGLIIKI
        PC+E+YVVGEG+TLH+IS KC DPFIV+ NP I D DDVFPGL+IK+
Subjt:  PCDEIYVVGEGETLHTISAKCSDPFIVDENPQIQDSDDVFPGLIIKI
AT5G62150.1 peptidoglycan-binding LysM domain-containing protein3.8e-2050.55Show/hide
Query:  STLCYSVFLFTALILLASAESG----------NNPPCDEIYVVGEGETLHTISAKCSDPFIVDENPQIQDSDDVFPGLIIKITPAINSRKL
        S  C +V L + ++LL+  E+           +  PC+EIY+VGEGETLHTI  KC DPFIV+ NP I D DDVFPGL++KI P   +RKL
Subjt:  STLCYSVFLFTALILLASAESG----------NNPPCDEIYVVGEGETLHTISAKCSDPFIVDENPQIQDSDDVFPGLIIKITPAINSRKL

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTCCTCAACATTGTGCTACTCTGTTTTCCTCTTCACGGCGCTCATACTTCTAGCCTCCGCCGAATCCGGCAACAACCCGCCGTGCGACGAGATCTACGTCGTCGG
AGAAGGCGAAACGCTGCACACGATCAGCGCCAAGTGCAGCGATCCTTTCATAGTCGACGAGAATCCTCAGATTCAAGACTCCGACGATGTTTTCCCTGGACTTATCATCA
AAATCACGCCCGCGATCAACTCCAGGAAGTTGTTCTTCAGGTAG
mRNA sequenceShow/hide mRNA sequence
TTTCCGTCGGCTCCACTTGTGGAAACCGCCAAAACTGACCGCTTTCCCCAACCCCCTCTCTCTCCCTTTATATACCAAAAACCAAAAACCAAAATCCAAAATCCGAAATC
AAATTCATTTTCCCTCTCTTCTCTTCTCATCAATGGCTTCCTCAACATTGTGCTACTCTGTTTTCCTCTTCACGGCGCTCATACTTCTAGCCTCCGCCGAATCCGGCAAC
AACCCGCCGTGCGACGAGATCTACGTCGTCGGAGAAGGCGAAACGCTGCACACGATCAGCGCCAAGTGCAGCGATCCTTTCATAGTCGACGAGAATCCTCAGATTCAAGA
CTCCGACGATGTTTTCCCTGGACTTATCATCAAAATCACGCCCGCGATCAACTCCAGGAAGTTGTTCTTCAGGTAGGTACATATACTACCTGCCTCGATTCTTCCGTCTA
TTGTGTTTTGTAGATTTACGATTCGCTTCTGTAAATCGATTCAGAAATCTGATAGTGTTGTTGCCT
Protein sequenceShow/hide protein sequence
MASSTLCYSVFLFTALILLASAESGNNPPCDEIYVVGEGETLHTISAKCSDPFIVDENPQIQDSDDVFPGLIIKITPAINSRKLFFR