; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Sed0001415 (gene) of Chayote v1 genome

Gene IDSed0001415
OrganismSechium edule (Chayote v1)
DescriptionDNA binding protein
Genome locationLG12:4388018..4388984
RNA-Seq ExpressionSed0001415
SyntenySed0001415
Gene Ontology termsNA
InterPro domainsIPR001841 - Zinc finger, RING-type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6597592.1 hypothetical protein SDJN03_10772, partial [Cucurbita argyrosperma subsp. sororia]3.5e-4151.28Show/hide
Query:  NPVPRCQECYIPQFECWIRHYFLLNLYIRRFCTNCVLKNSLDGFCPVCFEVYEDSTAPPPCPDRVICSKCPSISHRSCISSGFDSAYLCPLCSDPNLAFF
        N +  CQEC I Q ECWI H   +    RR CTNCVL+N++  FCPVCF+VY+DSTA PP   RV+C +CPSISH SCIS  F S +LCPLCSDP+  FF
Subjt:  NPVPRCQECYIPQFECWIRHYFLLNLYIRRFCTNCVLKNSLDGFCPVCFEVYEDSTAPPPCPDRVICSKCPSISHRSCISSGFDSAYLCPLCSDPNLAFF

Query:  --------SLGRSE------AGRIVDLKSSKVFLAAATLAARSMRKAVAGARAVADKEIEMAVIARKEAIRALERFAFIDQPEKVRKESANRNSN
                 L +SE      AGR +  KS+K  +AAA +AA+SMR+A A ARAVA+ +I+ A  A+K+A  ALER A+++  EK   E AN N +
Subjt:  --------SLGRSE------AGRIVDLKSSKVFLAAATLAARSMRKAVAGARAVADKEIEMAVIARKEAIRALERFAFIDQPEKVRKESANRNSN

KAG7029036.1 hypothetical protein SDJN02_10219, partial [Cucurbita argyrosperma subsp. argyrosperma]1.4e-4247.95Show/hide
Query:  ILSPGSDSRVSAQATIPMDEPPHKNPVPRCQECYIPQFECWIRHYFLLNLYIRRFCTNCVLKNSLDGFCPVCFEVYEDSTAPPPCPDRVICSKCPSISHR
        +L  G    VS  A      P   N +  CQEC I Q ECWI H   +    RR CTNCVL+N++  FCPVCF+VY+DSTA PP   RV+C +CPSISH 
Subjt:  ILSPGSDSRVSAQATIPMDEPPHKNPVPRCQECYIPQFECWIRHYFLLNLYIRRFCTNCVLKNSLDGFCPVCFEVYEDSTAPPPCPDRVICSKCPSISHR

Query:  SCISSGFDSAYLCPLCSDPNLAFF--------SLGRSE------AGRIVDLKSSKVFLAAATLAARSMRKAVAGARAVADKEIEMAVIARKEAIRALERF
        SCIS  F S +LCPLCSDP+  FF         L +SE      AGR +  KS+K  +AAA +AA+SMR+A A ARA+A+ +I+ A  A+K+A  ALER 
Subjt:  SCISSGFDSAYLCPLCSDPNLAFF--------SLGRSE------AGRIVDLKSSKVFLAAATLAARSMRKAVAGARAVADKEIEMAVIARKEAIRALERF

Query:  AFIDQPEKVRKESANRNSN
        A+++  EK   E AN N +
Subjt:  AFIDQPEKVRKESANRNSN

XP_022943680.1 uncharacterized protein LOC111448356 [Cucurbita moschata]3.5e-4151.28Show/hide
Query:  NPVPRCQECYIPQFECWIRHYFLLNLYIRRFCTNCVLKNSLDGFCPVCFEVYEDSTAPPPCPDRVICSKCPSISHRSCISSGFDSAYLCPLCSDPNLAFF
        N +  CQEC I Q ECWI H   +    RR CTNCVL+N++  FCPVCF+VY+DSTA PP   RV+C +CPSISH SCIS  F S +LCPLCSDP+  FF
Subjt:  NPVPRCQECYIPQFECWIRHYFLLNLYIRRFCTNCVLKNSLDGFCPVCFEVYEDSTAPPPCPDRVICSKCPSISHRSCISSGFDSAYLCPLCSDPNLAFF

Query:  --------SLGRSE------AGRIVDLKSSKVFLAAATLAARSMRKAVAGARAVADKEIEMAVIARKEAIRALERFAFIDQPEKVRKESANRNSN
                 L +SE      AGR +  KS+K  +AAA +AA+SMR+A A ARAVA+ +I+ A  A+K+A  ALER A+++  EK   E AN N +
Subjt:  --------SLGRSE------AGRIVDLKSSKVFLAAATLAARSMRKAVAGARAVADKEIEMAVIARKEAIRALERFAFIDQPEKVRKESANRNSN

XP_022955770.1 uncharacterized protein LOC111457661 [Cucurbita moschata]1.7e-4046.99Show/hide
Query:  KFKIESKITKRQSDRI---------LSPGSDSRVS----AQATIPMDEPPH----KNPVPRCQECYIPQFECWIRHYFLLNLYIRRFCTNCVLKNSLDGF
        +FKI++K  K   D              GSDSRVS    A A  PM+ P +     N +  C EC I Q  CWI H        RR CTNCVLKN+L  F
Subjt:  KFKIESKITKRQSDRI---------LSPGSDSRVS----AQATIPMDEPPH----KNPVPRCQECYIPQFECWIRHYFLLNLYIRRFCTNCVLKNSLDGF

Query:  CPVCFEVYEDSTAPPPCPDRVICSKCPSISHRSCISSGFDSAYLCPLCSDPNLAFF------SLGRSE------AGRIVDLKSSKVFLAAATLAARSMRK
        CP+CF++Y+DST PP    RV+C +CPSISH SC S  F S +LCP+CSDP  AFF       L +SE      AGR  D KS+K  +AAA +AA+SMR+
Subjt:  CPVCFEVYEDSTAPPPCPDRVICSKCPSISHRSCISSGFDSAYLCPLCSDPNLAFF------SLGRSE------AGRIVDLKSSKVFLAAATLAARSMRK

Query:  AVAGARAVADKEIEMAVIARKEAIRALERFAFIDQPEKVRKESANRNSN
        A A ARAVA+ +I  AV A+K+A  ALER AF+   EK R   A  N N
Subjt:  AVAGARAVADKEIEMAVIARKEAIRALERFAFIDQPEKVRKESANRNSN

XP_023540291.1 uncharacterized protein LOC111800711 [Cucurbita pepo subsp. pepo]5.9e-4151.79Show/hide
Query:  NPVPRCQECYIPQFECWIRHYFLLNLYIRRFCTNCVLKNSLDGFCPVCFEVYEDSTAPPPCPDRVICSKCPSISHRSCISSGFDSAYLCPLCSDPNLAFF
        N +  CQEC I Q ECWI H   +    RR CTNCVL+N++  FCPVCF+VY+DSTA PP   RV+C +CPSISH SCIS  F S +LCPLCSDP+  FF
Subjt:  NPVPRCQECYIPQFECWIRHYFLLNLYIRRFCTNCVLKNSLDGFCPVCFEVYEDSTAPPPCPDRVICSKCPSISHRSCISSGFDSAYLCPLCSDPNLAFF

Query:  ------SLG--RSE------AGRIVDLKSSKVFLAAATLAARSMRKAVAGARAVADKEIEMAVIARKEAIRALERFAFIDQPEKVRKESANRNSN
               LG  +SE      AGR +  KS+K  +AAA +AA+SMR+A A ARAVA+ +I+ A  A+K+A  ALER A+++  EK   E AN N +
Subjt:  ------SLG--RSE------AGRIVDLKSSKVFLAAATLAARSMRKAVAGARAVADKEIEMAVIARKEAIRALERFAFIDQPEKVRKESANRNSN

TrEMBL top hitse value%identityAlignment
A0A0A0L5G4 Uncharacterized protein1.0e-3845.89Show/hide
Query:  SDSRVS--AQATIPMDEPPH-----KNPVPRCQECYIPQFECWIRHYFLLNLYIRRFCTNCVLKNSLDGFCPVCFEVYEDSTAPPPCPDRVICSKCPSIS
        S SRVS  A AT+P     H      N +  CQ+C I Q  CWI H        RR CTNCVLK++L  FCP+CF+VYEDST PPP   RV+C +CPSIS
Subjt:  SDSRVS--AQATIPMDEPPH-----KNPVPRCQECYIPQFECWIRHYFLLNLYIRRFCTNCVLKNSLDGFCPVCFEVYEDSTAPPPCPDRVICSKCPSIS

Query:  HRSCISSGFDSAYLCPLCSDPNLAFF-------SLGRSE------AGRIVDLKSSKVFLAAATLAARSMRKAVAGARAVADKEIEMAVIARKEAIRALER
        H SC+S  F S +LCPLCSDP   FF       SL +SE      AG+ VD KS K  +AAA ++A+SMR+A   ARAVA+ +I+ A  A+K+A  ALE+
Subjt:  HRSCISSGFDSAYLCPLCSDPNLAFF-------SLGRSE------AGRIVDLKSSKVFLAAATLAARSMRKAVAGARAVADKEIEMAVIARKEAIRALER

Query:  FAFIDQPEKVRKESANRNSNKDDDDSKANSD
         A++   EK +   +  N +  D + K   +
Subjt:  FAFIDQPEKVRKESANRNSNKDDDDSKANSD

A0A6J1C9K9 uncharacterized protein LOC1110092092.4e-4048.39Show/hide
Query:  SRVSA-QATIPMDEP---PHKN----PVPRCQECYIPQFECWIRHYFLLNLYIRRFCTNCVLKNSLDGFCPVCFEVYEDSTAPPPCPDRVICSKCPSISH
        SRVSA  A  P   P   PH+N    P   CQEC   Q  CWI H+  L    RR CTNCVLKN+L GFCPVCF+VY+DS +PPP   RV+C +CPSISH
Subjt:  SRVSA-QATIPMDEP---PHKN----PVPRCQECYIPQFECWIRHYFLLNLYIRRFCTNCVLKNSLDGFCPVCFEVYEDSTAPPPCPDRVICSKCPSISH

Query:  RSCISSGFDSAYLCPLCSDPNLAFF----SLGRSEAG--------RIVDLKSSKVFLAAATLAARSMRKAVAGARAVADKEIEMAVIARKEAIRALERFA
         SC+S  F S +LC  CSDP   FF    S   S++G        R+VD KS++  +AAA +AA+SMR+A A ARA A+ +I+ A  A+K+A  ALER A
Subjt:  RSCISSGFDSAYLCPLCSDPNLAFF----SLGRSEAG--------RIVDLKSSKVFLAAATLAARSMRKAVAGARAVADKEIEMAVIARKEAIRALERFA

Query:  FIDQPEKVRKESANRNS
        F+   E+ R      N+
Subjt:  FIDQPEKVRKESANRNS

A0A6J1FY52 uncharacterized protein LOC1114483561.7e-4151.28Show/hide
Query:  NPVPRCQECYIPQFECWIRHYFLLNLYIRRFCTNCVLKNSLDGFCPVCFEVYEDSTAPPPCPDRVICSKCPSISHRSCISSGFDSAYLCPLCSDPNLAFF
        N +  CQEC I Q ECWI H   +    RR CTNCVL+N++  FCPVCF+VY+DSTA PP   RV+C +CPSISH SCIS  F S +LCPLCSDP+  FF
Subjt:  NPVPRCQECYIPQFECWIRHYFLLNLYIRRFCTNCVLKNSLDGFCPVCFEVYEDSTAPPPCPDRVICSKCPSISHRSCISSGFDSAYLCPLCSDPNLAFF

Query:  --------SLGRSE------AGRIVDLKSSKVFLAAATLAARSMRKAVAGARAVADKEIEMAVIARKEAIRALERFAFIDQPEKVRKESANRNSN
                 L +SE      AGR +  KS+K  +AAA +AA+SMR+A A ARAVA+ +I+ A  A+K+A  ALER A+++  EK   E AN N +
Subjt:  --------SLGRSE------AGRIVDLKSSKVFLAAATLAARSMRKAVAGARAVADKEIEMAVIARKEAIRALERFAFIDQPEKVRKESANRNSN

A0A6J1GVZ7 uncharacterized protein LOC1114576618.4e-4146.99Show/hide
Query:  KFKIESKITKRQSDRI---------LSPGSDSRVS----AQATIPMDEPPH----KNPVPRCQECYIPQFECWIRHYFLLNLYIRRFCTNCVLKNSLDGF
        +FKI++K  K   D              GSDSRVS    A A  PM+ P +     N +  C EC I Q  CWI H        RR CTNCVLKN+L  F
Subjt:  KFKIESKITKRQSDRI---------LSPGSDSRVS----AQATIPMDEPPH----KNPVPRCQECYIPQFECWIRHYFLLNLYIRRFCTNCVLKNSLDGF

Query:  CPVCFEVYEDSTAPPPCPDRVICSKCPSISHRSCISSGFDSAYLCPLCSDPNLAFF------SLGRSE------AGRIVDLKSSKVFLAAATLAARSMRK
        CP+CF++Y+DST PP    RV+C +CPSISH SC S  F S +LCP+CSDP  AFF       L +SE      AGR  D KS+K  +AAA +AA+SMR+
Subjt:  CPVCFEVYEDSTAPPPCPDRVICSKCPSISHRSCISSGFDSAYLCPLCSDPNLAFF------SLGRSE------AGRIVDLKSSKVFLAAATLAARSMRK

Query:  AVAGARAVADKEIEMAVIARKEAIRALERFAFIDQPEKVRKESANRNSN
        A A ARAVA+ +I  AV A+K+A  ALER AF+   EK R   A  N N
Subjt:  AVAGARAVADKEIEMAVIARKEAIRALERFAFIDQPEKVRKESANRNSN

A0A6J1I928 uncharacterized protein LOC1114707818.4e-4150.26Show/hide
Query:  NPVPRCQECYIPQFECWIRHYFLLNLYIRRFCTNCVLKNSLDGFCPVCFEVYEDSTAPPPCPDRVICSKCPSISHRSCISSGFDSAYLCPLCSDPNLAFF
        N +  CQEC I Q ECWI H   +    RR CTNC+L+N++  FCPVCF+VY+DSTA PP   RV+C +CPSISH SCIS  F S +LCPLCSDP+  FF
Subjt:  NPVPRCQECYIPQFECWIRHYFLLNLYIRRFCTNCVLKNSLDGFCPVCFEVYEDSTAPPPCPDRVICSKCPSISHRSCISSGFDSAYLCPLCSDPNLAFF

Query:  --------SLGRSE------AGRIVDLKSSKVFLAAATLAARSMRKAVAGARAVADKEIEMAVIARKEAIRALERFAFIDQPEKVRKESANRNSN
                 L +SE      AGR +  KS+K  +AAA +AA+SMR+A A ARAVA+ +I+ A  A+K+A  ALER A+++  EK   E  N N +
Subjt:  --------SLGRSE------AGRIVDLKSSKVFLAAATLAARSMRKAVAGARAVADKEIEMAVIARKEAIRALERFAFIDQPEKVRKESANRNSN

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G09520.1 LOCATED IN: chloroplast5.6e-2135.37Show/hide
Query:  PGSDSRVSAQATIPMDEPPHKNPVPRCQECYIPQFECWIRHYFLLNLYIRRFCTNCVLKNSLDGFCPVCFEVYEDSTAPPPCPDRVICS--KCPSISHRS
        P S +  S  AT         N   RC +C     + W+ H   L   +R FCT+C+L+N    FCP CF +Y+ S   PP   RV CS   C S++H  
Subjt:  PGSDSRVSAQATIPMDEPPHKNPVPRCQECYIPQFECWIRHYFLLNLYIRRFCTNCVLKNSLDGFCPVCFEVYEDSTAPPPCPDRVICS--KCPSISHRS

Query:  CISSGFDSAYLCPLCSDPN-LAFFSLGRSEAG-RIVDLKSSKVFLAAATLAARSMRKAVAGARAVADKEIEMAVIARKEAIRALERFAFIDQPEKVRKES
        C       +YLCP C DPN  +FF     E G R VD   S+ FL AA +AA SM KAV  A+   D+  + A +A+K A  ALE+   +D  EK R   
Subjt:  CISSGFDSAYLCPLCSDPN-LAFFSLGRSEAG-RIVDLKSSKVFLAAATLAARSMRKAVAGARAVADKEIEMAVIARKEAIRALERFAFIDQPEKVRKES

Query:  ANRNSNKDDDDSKANSDTNVDADSKADSS
                D   K +  +N     + +SS
Subjt:  ANRNSNKDDDDSKANSDTNVDADSKADSS

AT3G17460.1 PHD finger family protein1.2e-1030.88Show/hide
Query:  NPVPRCQECYI-PQFECWIRHYFLLNLYIRRFCTNCVLKNSLDGFCPVCFEVYEDSTAPPPCPDRVICSKCPSISHRSC---------ISSGFD-----S
        NP  + +EC +  + E    H  +     RR CT+C+LK   + FC VCF ++ D+  PP    R+IC  CPS +H SC          SS        S
Subjt:  NPVPRCQECYI-PQFECWIRHYFLLNLYIRRFCTNCVLKNSLDGFCPVCFEVYEDSTAPPPCPDRVICSKCPSISHRSC---------ISSGFD-----S

Query:  AYLCPLCSDPNLAFFSLGRSEAG----RIVDLKSSKVFLAAATLAARSMRKAVAGARAVADKEIEMAVIARKEAIRALERFAFIDQPEKVRKESANRNSN
        ++ C  CS+PN  FF   R          +  KS+   +AA  ++  +M KAVA  +  A K+I  A  A+  A  AL     I     V ++S      
Subjt:  AYLCPLCSDPNLAFFSLGRSEAG----RIVDLKSSKVFLAAATLAARSMRKAVAGARAVADKEIEMAVIARKEAIRALERFAFIDQPEKVRKESANRNSN

Query:  KDDD
        K+D+
Subjt:  KDDD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGCAGATCGAAGTTCAAAATTGAAAGCAAAATTACCAAACGCCAAAGTGATCGGATTCTCTCACCGGGCTCCGATTCTAGGGTTTCAGCTCAGGCGACTATTCCGAT
GGATGAGCCGCCGCACAAGAATCCCGTTCCTCGGTGCCAAGAATGCTACATTCCTCAGTTCGAGTGCTGGATCCGCCACTATTTTCTACTCAACTTGTACATCCGCCGTT
TCTGCACGAATTGCGTCCTCAAGAACAGTCTCGACGGTTTCTGTCCCGTTTGCTTCGAGGTTTACGAAGATTCGACTGCGCCGCCGCCGTGTCCTGACCGGGTAATTTGC
TCGAAATGTCCTTCGATTTCTCATCGATCTTGCATTTCTTCTGGTTTTGATTCTGCGTATCTGTGTCCTCTCTGCTCCGATCCTAATCTCGCCTTCTTTAGTCTTGGCCG
ATCGGAGGCCGGGAGGATTGTTGATCTTAAATCGTCGAAGGTGTTTCTTGCTGCCGCTACTCTTGCCGCTCGGTCGATGCGAAAAGCCGTGGCTGGCGCTAGGGCTGTAG
CGGATAAGGAGATCGAGATGGCTGTGATTGCTAGGAAGGAGGCTATTCGCGCGTTGGAGCGATTTGCTTTTATTGATCAACCGGAGAAAGTTAGAAAGGAAAGTGCTAAT
AGAAATAGTAATAAAGATGATGATGATTCAAAGGCTAATAGTGATACTAATGTTGATGCTGATTCAAAGGCTGATAGTAGTGGAGATGCTGCTTTTGCAGAAGAATTAAC
TGAAATGCTTGAGTTTGATTCAAAGGCCGATACTAATAGAGATGATGATTCAAAGGCTAATAGTGATACTAATGTAGATGCTGATTCAAATGCTGATAGTAAGAATGGTG
GAGATGCTGAGTTTGCAGAAGAATTAGCTGAAATGCTCGATTCTGATTCTAACGATGATAACTGA
mRNA sequenceShow/hide mRNA sequence
ATGTGCAGATCGAAGTTCAAAATTGAAAGCAAAATTACCAAACGCCAAAGTGATCGGATTCTCTCACCGGGCTCCGATTCTAGGGTTTCAGCTCAGGCGACTATTCCGAT
GGATGAGCCGCCGCACAAGAATCCCGTTCCTCGGTGCCAAGAATGCTACATTCCTCAGTTCGAGTGCTGGATCCGCCACTATTTTCTACTCAACTTGTACATCCGCCGTT
TCTGCACGAATTGCGTCCTCAAGAACAGTCTCGACGGTTTCTGTCCCGTTTGCTTCGAGGTTTACGAAGATTCGACTGCGCCGCCGCCGTGTCCTGACCGGGTAATTTGC
TCGAAATGTCCTTCGATTTCTCATCGATCTTGCATTTCTTCTGGTTTTGATTCTGCGTATCTGTGTCCTCTCTGCTCCGATCCTAATCTCGCCTTCTTTAGTCTTGGCCG
ATCGGAGGCCGGGAGGATTGTTGATCTTAAATCGTCGAAGGTGTTTCTTGCTGCCGCTACTCTTGCCGCTCGGTCGATGCGAAAAGCCGTGGCTGGCGCTAGGGCTGTAG
CGGATAAGGAGATCGAGATGGCTGTGATTGCTAGGAAGGAGGCTATTCGCGCGTTGGAGCGATTTGCTTTTATTGATCAACCGGAGAAAGTTAGAAAGGAAAGTGCTAAT
AGAAATAGTAATAAAGATGATGATGATTCAAAGGCTAATAGTGATACTAATGTTGATGCTGATTCAAAGGCTGATAGTAGTGGAGATGCTGCTTTTGCAGAAGAATTAAC
TGAAATGCTTGAGTTTGATTCAAAGGCCGATACTAATAGAGATGATGATTCAAAGGCTAATAGTGATACTAATGTAGATGCTGATTCAAATGCTGATAGTAAGAATGGTG
GAGATGCTGAGTTTGCAGAAGAATTAGCTGAAATGCTCGATTCTGATTCTAACGATGATAACTGA
Protein sequenceShow/hide protein sequence
MCRSKFKIESKITKRQSDRILSPGSDSRVSAQATIPMDEPPHKNPVPRCQECYIPQFECWIRHYFLLNLYIRRFCTNCVLKNSLDGFCPVCFEVYEDSTAPPPCPDRVIC
SKCPSISHRSCISSGFDSAYLCPLCSDPNLAFFSLGRSEAGRIVDLKSSKVFLAAATLAARSMRKAVAGARAVADKEIEMAVIARKEAIRALERFAFIDQPEKVRKESAN
RNSNKDDDDSKANSDTNVDADSKADSSGDAAFAEELTEMLEFDSKADTNRDDDSKANSDTNVDADSNADSKNGGDAEFAEELAEMLDSDSNDDN