; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Sed0001424 (gene) of Chayote v1 genome

Gene IDSed0001424
OrganismSechium edule (Chayote v1)
DescriptionAlba domain-containing protein
Genome locationLG12:33870958..33873610
RNA-Seq ExpressionSed0001424
SyntenySed0001424
Gene Ontology termsGO:0005634 - nucleus (cellular component)
GO:0003723 - RNA binding (molecular function)
InterPro domainsIPR002775 - DNA/RNA-binding protein Alba-like
IPR014560 - Uncharacterised conserved protein UCP030333, DNA/RNA-binding Alba-related
IPR036882 - Alba-like domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004150019.1 uncharacterized protein At2g34160 [Cucumis sativus]1.4e-5594.66Show/hide
Query:  MEEITEGVSAIALTADSSQKKNRIQVSNTKKPLFFYVNLAKRYMQQYNEVELSALGMAIATVVSVAEILKNNGLALEKKIMTSTVDIKDDSRGRPVQKAK
        MEEITEGV++I LTAD SQKKNRIQVSNTKKPLFFYVNLAKRYMQQYNEVELSALGMAIATVV+VAEILKNNGLALEKKIMTSTVDIKDDSRGRPVQKAK
Subjt:  MEEITEGVSAIALTADSSQKKNRIQVSNTKKPLFFYVNLAKRYMQQYNEVELSALGMAIATVVSVAEILKNNGLALEKKIMTSTVDIKDDSRGRPVQKAK

Query:  IEVVLGKTENFDELMAAAAEEREKEDGEEQS
        IE+VLGKTENFDELMAAAAEERE EDGEEQS
Subjt:  IEVVLGKTENFDELMAAAAEEREKEDGEEQS

XP_022924689.1 uncharacterized protein At2g34160-like [Cucurbita moschata]3.0e-5594.66Show/hide
Query:  MEEITEGVSAIALTADSSQKKNRIQVSNTKKPLFFYVNLAKRYMQQYNEVELSALGMAIATVVSVAEILKNNGLALEKKIMTSTVDIKDDSRGRPVQKAK
        MEEITEGV++IALTAD SQKKNRIQVSNTKKPLFFYVNLAKRYMQQYNEVELSALGMAIATVV+VAEILKNNGLALEKKIMTSTVDIKDDSRGRPVQKAK
Subjt:  MEEITEGVSAIALTADSSQKKNRIQVSNTKKPLFFYVNLAKRYMQQYNEVELSALGMAIATVVSVAEILKNNGLALEKKIMTSTVDIKDDSRGRPVQKAK

Query:  IEVVLGKTENFDELMAAAAEEREKEDGEEQS
        IE+VLGKTENFDELMAAAAEERE  DGEEQS
Subjt:  IEVVLGKTENFDELMAAAAEEREKEDGEEQS

XP_022961070.1 uncharacterized protein At2g34160-like [Cucurbita moschata]4.6e-5695.42Show/hide
Query:  MEEITEGVSAIALTADSSQKKNRIQVSNTKKPLFFYVNLAKRYMQQYNEVELSALGMAIATVVSVAEILKNNGLALEKKIMTSTVDIKDDSRGRPVQKAK
        MEEITEGV++IALTAD SQKKNRIQVSNTKKPLFFYVNLAKRYMQQYNEVELSALGMAIATVV+VAEILKNNGLALEKKIMTSTVDIKDDSRGRPVQKAK
Subjt:  MEEITEGVSAIALTADSSQKKNRIQVSNTKKPLFFYVNLAKRYMQQYNEVELSALGMAIATVVSVAEILKNNGLALEKKIMTSTVDIKDDSRGRPVQKAK

Query:  IEVVLGKTENFDELMAAAAEEREKEDGEEQS
        IE+VLGKTENFDELMAAAAEERE EDGEEQS
Subjt:  IEVVLGKTENFDELMAAAAEEREKEDGEEQS

XP_022972044.1 uncharacterized protein At2g34160-like [Cucurbita maxima]3.0e-5594.66Show/hide
Query:  MEEITEGVSAIALTADSSQKKNRIQVSNTKKPLFFYVNLAKRYMQQYNEVELSALGMAIATVVSVAEILKNNGLALEKKIMTSTVDIKDDSRGRPVQKAK
        MEEITEGV++IALTAD SQKKNRIQVSNTKKPLFFYVNLAKRYMQQYNEVELSALGMAIATVV+VAEILKNNGLALEKKIMTSTVDIKDDSRGRPVQKAK
Subjt:  MEEITEGVSAIALTADSSQKKNRIQVSNTKKPLFFYVNLAKRYMQQYNEVELSALGMAIATVVSVAEILKNNGLALEKKIMTSTVDIKDDSRGRPVQKAK

Query:  IEVVLGKTENFDELMAAAAEEREKEDGEEQS
        IE+VLGKTENFDELMAAAAEERE  DGEEQS
Subjt:  IEVVLGKTENFDELMAAAAEEREKEDGEEQS

XP_022987902.1 uncharacterized protein At2g34160-like [Cucurbita maxima]1.8e-5594.66Show/hide
Query:  MEEITEGVSAIALTADSSQKKNRIQVSNTKKPLFFYVNLAKRYMQQYNEVELSALGMAIATVVSVAEILKNNGLALEKKIMTSTVDIKDDSRGRPVQKAK
        MEEITEGV++IALTAD SQKKNRIQVSNTKKPLFFYVNLAKRYMQQYNEVELSALGMAIATVV+VAEILKNNGLALEKKIMTSTVDIKDDSRGRPVQKAK
Subjt:  MEEITEGVSAIALTADSSQKKNRIQVSNTKKPLFFYVNLAKRYMQQYNEVELSALGMAIATVVSVAEILKNNGLALEKKIMTSTVDIKDDSRGRPVQKAK

Query:  IEVVLGKTENFDELMAAAAEEREKEDGEEQS
        IE+VLGKTENFDELMAAA EERE EDGEEQS
Subjt:  IEVVLGKTENFDELMAAAAEEREKEDGEEQS

TrEMBL top hitse value%identityAlignment
A0A0A0LZB6 Alba domain-containing protein6.5e-5694.66Show/hide
Query:  MEEITEGVSAIALTADSSQKKNRIQVSNTKKPLFFYVNLAKRYMQQYNEVELSALGMAIATVVSVAEILKNNGLALEKKIMTSTVDIKDDSRGRPVQKAK
        MEEITEGV++I LTAD SQKKNRIQVSNTKKPLFFYVNLAKRYMQQYNEVELSALGMAIATVV+VAEILKNNGLALEKKIMTSTVDIKDDSRGRPVQKAK
Subjt:  MEEITEGVSAIALTADSSQKKNRIQVSNTKKPLFFYVNLAKRYMQQYNEVELSALGMAIATVVSVAEILKNNGLALEKKIMTSTVDIKDDSRGRPVQKAK

Query:  IEVVLGKTENFDELMAAAAEEREKEDGEEQS
        IE+VLGKTENFDELMAAAAEERE EDGEEQS
Subjt:  IEVVLGKTENFDELMAAAAEEREKEDGEEQS

A0A1S3B8Y2 uncharacterized protein At2g34160-like6.5e-5694.66Show/hide
Query:  MEEITEGVSAIALTADSSQKKNRIQVSNTKKPLFFYVNLAKRYMQQYNEVELSALGMAIATVVSVAEILKNNGLALEKKIMTSTVDIKDDSRGRPVQKAK
        MEEITEGV++I LTAD SQKKNRIQVSNTKKPLFFYVNLAKRYMQQYNEVELSALGMAIATVV+VAEILKNNGLALEKKIMTSTVDIKDDSRGRPVQKAK
Subjt:  MEEITEGVSAIALTADSSQKKNRIQVSNTKKPLFFYVNLAKRYMQQYNEVELSALGMAIATVVSVAEILKNNGLALEKKIMTSTVDIKDDSRGRPVQKAK

Query:  IEVVLGKTENFDELMAAAAEEREKEDGEEQS
        IE+VLGKTENFDELMAAAAEERE EDGEEQS
Subjt:  IEVVLGKTENFDELMAAAAEEREKEDGEEQS

A0A5A7TV88 Alba domain-containing protein6.5e-5694.66Show/hide
Query:  MEEITEGVSAIALTADSSQKKNRIQVSNTKKPLFFYVNLAKRYMQQYNEVELSALGMAIATVVSVAEILKNNGLALEKKIMTSTVDIKDDSRGRPVQKAK
        MEEITEGV++I LTAD SQKKNRIQVSNTKKPLFFYVNLAKRYMQQYNEVELSALGMAIATVV+VAEILKNNGLALEKKIMTSTVDIKDDSRGRPVQKAK
Subjt:  MEEITEGVSAIALTADSSQKKNRIQVSNTKKPLFFYVNLAKRYMQQYNEVELSALGMAIATVVSVAEILKNNGLALEKKIMTSTVDIKDDSRGRPVQKAK

Query:  IEVVLGKTENFDELMAAAAEEREKEDGEEQS
        IE+VLGKTENFDELMAAAAEERE EDGEEQS
Subjt:  IEVVLGKTENFDELMAAAAEEREKEDGEEQS

A0A6J1CUJ0 uncharacterized protein At2g34160-like6.5e-5694.66Show/hide
Query:  MEEITEGVSAIALTADSSQKKNRIQVSNTKKPLFFYVNLAKRYMQQYNEVELSALGMAIATVVSVAEILKNNGLALEKKIMTSTVDIKDDSRGRPVQKAK
        MEEITEGV++I LTAD SQKKNRIQVSNTKKPLFFYVNLAKRYMQQYNEVELSALGMAIATVV+VAEILKNNGLALEKKIMTSTVDIKDDSRGRPVQKAK
Subjt:  MEEITEGVSAIALTADSSQKKNRIQVSNTKKPLFFYVNLAKRYMQQYNEVELSALGMAIATVVSVAEILKNNGLALEKKIMTSTVDIKDDSRGRPVQKAK

Query:  IEVVLGKTENFDELMAAAAEEREKEDGEEQS
        IE+VLGKTENFDELMAAAAEERE EDGEEQS
Subjt:  IEVVLGKTENFDELMAAAAEEREKEDGEEQS

A0A6J1HAY2 uncharacterized protein At2g34160-like2.2e-5695.42Show/hide
Query:  MEEITEGVSAIALTADSSQKKNRIQVSNTKKPLFFYVNLAKRYMQQYNEVELSALGMAIATVVSVAEILKNNGLALEKKIMTSTVDIKDDSRGRPVQKAK
        MEEITEGV++IALTAD SQKKNRIQVSNTKKPLFFYVNLAKRYMQQYNEVELSALGMAIATVV+VAEILKNNGLALEKKIMTSTVDIKDDSRGRPVQKAK
Subjt:  MEEITEGVSAIALTADSSQKKNRIQVSNTKKPLFFYVNLAKRYMQQYNEVELSALGMAIATVVSVAEILKNNGLALEKKIMTSTVDIKDDSRGRPVQKAK

Query:  IEVVLGKTENFDELMAAAAEEREKEDGEEQS
        IE+VLGKTENFDELMAAAAEERE EDGEEQS
Subjt:  IEVVLGKTENFDELMAAAAEEREKEDGEEQS

SwissProt top hitse value%identityAlignment
O22969 Uncharacterized protein At2g341605.3e-4778.63Show/hide
Query:  MEEITEGVSAIALTADSSQKKNRIQVSNTKKPLFFYVNLAKRYMQQYNEVELSALGMAIATVVSVAEILKNNGLALEKKIMTSTVDIKDDSRGRPVQKAK
        MEEIT+GV+ + L  D SQKKNRIQVSNTKKPLFFYVNLAKRYMQQYN+VELSALGMAIATVV+V EILKNNG A+EKKIMTSTVDIKDD+RGRPVQKAK
Subjt:  MEEITEGVSAIALTADSSQKKNRIQVSNTKKPLFFYVNLAKRYMQQYNEVELSALGMAIATVVSVAEILKNNGLALEKKIMTSTVDIKDDSRGRPVQKAK

Query:  IEVVLGKTENFDELMAAAAEEREKEDGEEQS
        IE+ L K+E FDELMAAA EE+E  + + Q+
Subjt:  IEVVLGKTENFDELMAAAAEEREKEDGEEQS

Arabidopsis top hitse value%identityAlignment
AT1G29250.1 Alba DNA/RNA-binding protein2.0e-4980.15Show/hide
Query:  MEEITEGVSAIALTADSSQKKNRIQVSNTKKPLFFYVNLAKRYMQQYNEVELSALGMAIATVVSVAEILKNNGLALEKKIMTSTVDIKDDSRGRPVQKAK
        MEEITEGV+ + L  D +QKKNRIQVSNTKKPLFFYVNLAKRYMQQY +VELSALGMAIATVV+VAEILKNNG A+EKKIMTSTVDIKDDSRGRPVQKAK
Subjt:  MEEITEGVSAIALTADSSQKKNRIQVSNTKKPLFFYVNLAKRYMQQYNEVELSALGMAIATVVSVAEILKNNGLALEKKIMTSTVDIKDDSRGRPVQKAK

Query:  IEVVLGKTENFDELMAAAAEEREKEDGEEQS
        IE+ L K+E FDELMAAA EE+E  + +EQ+
Subjt:  IEVVLGKTENFDELMAAAAEEREKEDGEEQS

AT2G34160.1 Alba DNA/RNA-binding protein3.8e-4878.63Show/hide
Query:  MEEITEGVSAIALTADSSQKKNRIQVSNTKKPLFFYVNLAKRYMQQYNEVELSALGMAIATVVSVAEILKNNGLALEKKIMTSTVDIKDDSRGRPVQKAK
        MEEIT+GV+ + L  D SQKKNRIQVSNTKKPLFFYVNLAKRYMQQYN+VELSALGMAIATVV+V EILKNNG A+EKKIMTSTVDIKDD+RGRPVQKAK
Subjt:  MEEITEGVSAIALTADSSQKKNRIQVSNTKKPLFFYVNLAKRYMQQYNEVELSALGMAIATVVSVAEILKNNGLALEKKIMTSTVDIKDDSRGRPVQKAK

Query:  IEVVLGKTENFDELMAAAAEEREKEDGEEQS
        IE+ L K+E FDELMAAA EE+E  + + Q+
Subjt:  IEVVLGKTENFDELMAAAAEEREKEDGEEQS

AT3G04620.1 Alba DNA/RNA-binding protein4.4e-3668.81Show/hide
Query:  SQKKNRIQVSNTKKPLFFYVNLAKRYMQQYNEVELSALGMAIATVVSVAEILKNNGLALEKKIMTSTVDIKDDSRGRPVQKAKIEVVLGKTENFDELMAA
        + KKNRIQVSNTKKPLFFYVNLAKRY+QQ+NEVELSALGMAI TVV+++EILKNNGLA EKK++TSTV +KD+++G+ VQKAKIE+VLGK++ FD L+  
Subjt:  SQKKNRIQVSNTKKPLFFYVNLAKRYMQQYNEVELSALGMAIATVVSVAEILKNNGLALEKKIMTSTVDIKDDSRGRPVQKAKIEVVLGKTENFDELMAA

Query:  AAEEREKED
            +  E+
Subjt:  AAEEREKED


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAGAGATAACGGAGGGTGTAAGCGCCATCGCCTTGACTGCCGACTCCTCGCAGAAGAAGAATCGAATTCAGGTCTCCAACACCAAGAAGCCCCTCTTCTTCTATGT
TAATCTCGCCAAGAGGTATATGCAGCAGTATAATGAGGTCGAGCTTTCTGCTCTTGGAATGGCCATTGCAACTGTTGTGTCTGTTGCAGAAATTCTGAAAAACAATGGAC
TGGCTTTAGAAAAGAAGATTATGACTTCCACCGTTGATATCAAGGATGATTCACGTGGAAGACCCGTTCAAAAGGCTAAGATTGAGGTTGTGCTGGGGAAAACTGAAAAC
TTCGATGAACTGATGGCTGCCGCTGCGGAGGAAAGGGAAAAAGAAGATGGTGAAGAGCAGAGTTGA
mRNA sequenceShow/hide mRNA sequence
AATTATTCATCTAAAATCCCAATAATAAAAATAATTTTTGGTAATTTTTTGCGTCTTGTGACTCCCGAAACACAAATAGGTGAGCTTTATCGAAAACCCTAATTTTGTGA
AAGTCGCATTTTGAGTTTTAGGGTTTTAGGTTTGCGAAGCTCAATGGAAGAGATAACGGAGGGTGTAAGCGCCATCGCCTTGACTGCCGACTCCTCGCAGAAGAAGAATC
GAATTCAGGTCTCCAACACCAAGAAGCCCCTCTTCTTCTATGTTAATCTCGCCAAGAGGTATATGCAGCAGTATAATGAGGTCGAGCTTTCTGCTCTTGGAATGGCCATT
GCAACTGTTGTGTCTGTTGCAGAAATTCTGAAAAACAATGGACTGGCTTTAGAAAAGAAGATTATGACTTCCACCGTTGATATCAAGGATGATTCACGTGGAAGACCCGT
TCAAAAGGCTAAGATTGAGGTTGTGCTGGGGAAAACTGAAAACTTCGATGAACTGATGGCTGCCGCTGCGGAGGAAAGGGAAAAAGAAGATGGTGAAGAGCAGAGTTGAA
AAGTTTTTTTTTATTTCCTTTGTTTTTCTTCTCTGTTCTTATCCTCCGTGTGGACGAGTCTGGTTATTTCGTTATATCTGGTCTCTTTGTTCTTAACTAACGTTAGTTAC
CAAGTGGTTTATTTCTGATTGTAGGCTTTTTAGTTGGGGAACCATTTACATGCCCTTTTTAGATTCCATGGGATATGATCGTTTAAGAGAGTGGAAACATAATCAAACTG
AGTTGGTCTTCAAAATCAAGTTTATATTGCTAATTTTGCATTCAATAGATGTTCTGCTTCAGATATTATAACTGCA
Protein sequenceShow/hide protein sequence
MEEITEGVSAIALTADSSQKKNRIQVSNTKKPLFFYVNLAKRYMQQYNEVELSALGMAIATVVSVAEILKNNGLALEKKIMTSTVDIKDDSRGRPVQKAKIEVVLGKTEN
FDELMAAAAEEREKEDGEEQS