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Sed0001434 (gene) of Chayote v1 genome

Gene IDSed0001434
OrganismSechium edule (Chayote v1)
DescriptionCYSTM domain-containing protein
Genome locationLG05:36725829..36727575
RNA-Seq ExpressionSed0001434
SyntenySed0001434
Gene Ontology termsGO:0005886 - plasma membrane (cellular component)
GO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR028144 - Cysteine-rich transmembrane CYSTM domain
IPR044850 - Cysteine-rich and transmembrane domain-containing protein WIH1/2-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF3953656.1 hypothetical protein CMV_020922 [Castanea mollissima]1.7e-2072.22Show/hide
Query:  MSSAQPAGVYPPPSTVPTSYSAPPPAGYPMRDGGDFSQQPAPVPSQTTSRGDGFWKGCCAALCCCCVLDACF
        MSS++PA  YPPPST P  Y APPPAGYP +DG  +SQ P P P +T SRG+GFWKGCCAALCCCCVLDACF
Subjt:  MSSAQPAGVYPPPSTVPTSYSAPPPAGYPMRDGGDFSQQPAPVPSQTTSRGDGFWKGCCAALCCCCVLDACF

KAF3972548.1 hypothetical protein CMV_003960 [Castanea mollissima]5.9e-2173.61Show/hide
Query:  MSSAQPAGVYPPPSTVPTSYSAPPPAGYPMRDGGDFSQQPAPVPSQTTSRGDGFWKGCCAALCCCCVLDACF
        MSS++PA  YPPPST P  Y APPPAGYP +DG  +SQ P P P +T SRGDGFWKGCCAALCCCCVLDACF
Subjt:  MSSAQPAGVYPPPSTVPTSYSAPPPAGYPMRDGGDFSQQPAPVPSQTTSRGDGFWKGCCAALCCCCVLDACF

KAG6591814.1 hypothetical protein SDJN03_14160, partial [Cucurbita argyrosperma subsp. sororia]1.9e-2787.5Show/hide
Query:  MSSAQPAGVYPPPSTVPTSYSAPPPAGYPMRDGGDFSQQPAPVPSQTTSRGDGFWKGCCAALCCCCVLDACF
        MSS QPA VYPPPST+PTSY+APPPAGYP RDGGDFS QPAPVP++T SRGDGFWKGCCAALCCCCVLDACF
Subjt:  MSSAQPAGVYPPPSTVPTSYSAPPPAGYPMRDGGDFSQQPAPVPSQTTSRGDGFWKGCCAALCCCCVLDACF

XP_022137938.1 cysteine-rich and transmembrane domain-containing protein WIH2-like [Momordica charantia]2.1e-2684.72Show/hide
Query:  MSSAQPAGVYPPPSTVPTSYSAPPPAGYPMRDGGDFSQQPAPVPSQTTSRGDGFWKGCCAALCCCCVLDACF
        MSSAQPA VYPPPST P SY+APPPAGYP RDGGDFS QP PVP++T SRGDGFWKGCCAA+CCCCVLDACF
Subjt:  MSSAQPAGVYPPPSTVPTSYSAPPPAGYPMRDGGDFSQQPAPVPSQTTSRGDGFWKGCCAALCCCCVLDACF

XP_031739667.1 cysteine-rich and transmembrane domain-containing protein WIH1-like [Cucumis sativus]4.4e-2485.14Show/hide
Query:  MSSAQPAGV-YPPP-STVPTSYSAPPPAGYPMRDGGDFSQQPAPVPSQTTSRGDGFWKGCCAALCCCCVLDACF
        MSSAQPAGV YPPP STVPTSYSAPPPAGYP R+GGDFS    PVP++T SRGDGFWKGCCAALCCCCVLDACF
Subjt:  MSSAQPAGV-YPPP-STVPTSYSAPPPAGYPMRDGGDFSQQPAPVPSQTTSRGDGFWKGCCAALCCCCVLDACF

TrEMBL top hitse value%identityAlignment
A0A6J1CBQ4 cysteine-rich and transmembrane domain-containing protein WIH2-like1.0e-2684.72Show/hide
Query:  MSSAQPAGVYPPPSTVPTSYSAPPPAGYPMRDGGDFSQQPAPVPSQTTSRGDGFWKGCCAALCCCCVLDACF
        MSSAQPA VYPPPST P SY+APPPAGYP RDGGDFS QP PVP++T SRGDGFWKGCCAA+CCCCVLDACF
Subjt:  MSSAQPAGVYPPPSTVPTSYSAPPPAGYPMRDGGDFSQQPAPVPSQTTSRGDGFWKGCCAALCCCCVLDACF

A0A7N2LG73 CYSTM domain-containing protein6.4e-2172.22Show/hide
Query:  MSSAQPAGVYPPPSTVPTSYSAPPPAGYPMRDGGDFSQQPAPVPSQTTSRGDGFWKGCCAALCCCCVLDACF
        MSS++PA  YPPPST P  Y APPPAGYP +DG  +SQ P P P +T SRGDGFWKGCCAALCCCCV+DACF
Subjt:  MSSAQPAGVYPPPSTVPTSYSAPPPAGYPMRDGGDFSQQPAPVPSQTTSRGDGFWKGCCAALCCCCVLDACF

A0A7N2LI27 CYSTM domain-containing protein1.9e-1773.02Show/hide
Query:  YPPPSTVPTSYSAPPPAGYPMRDGGDFSQQPAPVPSQTTSRGDGFWKGCCAALCCCCVLDACF
        YPPPST P  Y APPPAGYP +DG  + Q   P P +T SRGDGFWKGCCAALCCCCVLDACF
Subjt:  YPPPSTVPTSYSAPPPAGYPMRDGGDFSQQPAPVPSQTTSRGDGFWKGCCAALCCCCVLDACF

A0A7N2LJ98 CYSTM domain-containing protein5.4e-2070.83Show/hide
Query:  MSSAQPAGVYPPPSTVPTSYSAPPPAGYPMRDGGDFSQQPAPVPSQTTSRGDGFWKGCCAALCCCCVLDACF
        MSS++PA  YPPPST PT Y A PPAGYP +DG  +SQ P P P +T SRGDGFWKGCCAALCCCC LD CF
Subjt:  MSSAQPAGVYPPPSTVPTSYSAPPPAGYPMRDGGDFSQQPAPVPSQTTSRGDGFWKGCCAALCCCCVLDACF

A0A7N2R3F7 CYSTM domain-containing protein4.9e-2173.61Show/hide
Query:  MSSAQPAGVYPPPSTVPTSYSAPPPAGYPMRDGGDFSQQPAPVPSQTTSRGDGFWKGCCAALCCCCVLDACF
        MSS++PA  YPPPSTVP  Y APPPAGYP +DG  + Q P P P +T SRGDGFWKGCCAALCCCCVLDACF
Subjt:  MSSAQPAGVYPPPSTVPTSYSAPPPAGYPMRDGGDFSQQPAPVPSQTTSRGDGFWKGCCAALCCCCVLDACF

SwissProt top hitse value%identityAlignment
Q8S8M0 Cysteine-rich and transmembrane domain-containing protein WIH21.4e-0440.79Show/hide
Query:  PAGVYPPPSTVPTSY--SAPPPAGYPMRDGGD-------FSQQPAPVPSQTTSRGDGFWKGCCAALCCCCVLDACF
        P   YPP    P  Y     PP GYP +             Q P P   Q      GF +GC AALCCCC+LDACF
Subjt:  PAGVYPPPSTVPTSY--SAPPPAGYPMRDGGD-------FSQQPAPVPSQTTSRGDGFWKGCCAALCCCCVLDACF

Arabidopsis top hitse value%identityAlignment
AT1G05340.1 unknown protein1.5e-0951.47Show/hide
Query:  QPAGVYPPPSTVPTSYSAPPPAGYPMRDGGDFSQQPAPVPSQTTSRGDGFWKGCCAALCCCCVLDACF
        Q AG  PPP  + T  S PPP GYP       S     V  +T S+GDGF+KGC AA+CCCC LD CF
Subjt:  QPAGVYPPPSTVPTSYSAPPPAGYPMRDGGDFSQQPAPVPSQTTSRGDGFWKGCCAALCCCCVLDACF

AT2G32190.1 unknown protein1.6e-1150.7Show/hide
Query:  SSAQPAGVYPPPSTVPTSYSAPPPAGYPMRDGGDFSQQPAPVPSQTTSRGDGFWKGCCAALCCCCVLDACF
        S  Q +G YP P      Y  PPP GYP  D           P +T S+GDGF KGC AA+CCCCVLDACF
Subjt:  SSAQPAGVYPPPSTVPTSYSAPPPAGYPMRDGGDFSQQPAPVPSQTTSRGDGFWKGCCAALCCCCVLDACF

AT2G32210.1 unknown protein2.0e-1150.7Show/hide
Query:  SSAQPAGVYPPPSTVPTSYSAPPPAGYPMRDGGDFSQQPAPVPSQTTSRGDGFWKGCCAALCCCCVLDACF
        S  Q +G YP P      Y APPP GYP  D    +        +T S+GDGF KGC AA+CCCCVLDACF
Subjt:  SSAQPAGVYPPPSTVPTSYSAPPPAGYPMRDGGDFSQQPAPVPSQTTSRGDGFWKGCCAALCCCCVLDACF

AT3G22235.1 BEST Arabidopsis thaliana protein match is: pathogen and circadian controlled 1 (TAIR:AT3G22231.1)1.4e-0750Show/hide
Query:  VYPPPSTVPTSYSAPPPAGYPMRDG--GDFSQQPAPVPSQTTSRGDGFWKGCCAALCCCCVLDACF
        V  P  T    Y++PPP GYP RD   GD    P     +T S+G    +GCCAA+CCCCVLDACF
Subjt:  VYPPPSTVPTSYSAPPPAGYPMRDG--GDFSQQPAPVPSQTTSRGDGFWKGCCAALCCCCVLDACF

AT3G22240.1 unknown protein2.2e-1357.58Show/hide
Query:  VYPPPSTVPTSYSAPPPAGYPMRDG--GDFSQQPAPVPSQTTSRGDGFWKGCCAALCCCCVLDACF
        V  P  T    Y++PPP GYP RD   GD    P     +T S+GDGFWKGCCAA+CCCCVLDACF
Subjt:  VYPPPSTVPTSYSAPPPAGYPMRDG--GDFSQQPAPVPSQTTSRGDGFWKGCCAALCCCCVLDACF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGTTCCGCTCAGCCTGCAGGTGTTTATCCTCCACCCTCCACCGTGCCAACCTCTTATTCAGCTCCGCCGCCGGCGGGGTATCCGATGAGAGACGGCGGCGACTTCTC
CCAGCAACCCGCTCCTGTTCCTTCTCAAACTACCTCCAGAGGCGATGGCTTTTGGAAAGGCTGTTGTGCTGCGTTGTGTTGCTGCTGTGTATTGGATGCATGCTTCTAA
mRNA sequenceShow/hide mRNA sequence
GGTTTAGCCGCCCTTGGTCGGACCCTCTCTATATATACACCCACTCCACTCTCCCTAATTGCCTATCAAACTAATTAACAACATAAATACACTATTTCTAATTTTCCTTT
CCTCATCTTCCTCTCCTCTCCTCCTCTCCTATTTTATTTTATTTCTTACATCAACATGAGTTCCGCTCAGCCTGCAGGTGTTTATCCTCCACCCTCCACCGTGCCAACCT
CTTATTCAGCTCCGCCGCCGGCGGGGTATCCGATGAGAGACGGCGGCGACTTCTCCCAGCAACCCGCTCCTGTTCCTTCTCAAACTACCTCCAGAGGCGATGGCTTTTGG
AAAGGCTGTTGTGCTGCGTTGTGTTGCTGCTGTGTATTGGATGCATGCTTCTAATCACCAGAAGTGAAGACAACAAATTCTTGAAGATCTATATGATCCATTTGCATATT
TGTCATTTTAGTGTTTTTATTTTTATTTAATTTTTTGTGAATTTTTGGATTATTAATTATATGATGTTGTAATAATAAATTGGGTGTTGAATATTAGAAATCTTGCTGAT
GAAACCATATTGACTTGTGTGATTCATACCATATGTTTTTCTAGGGAGTGGTTGTAAGTTGGTTTGTTTTCATATCCTCATGACACGTGTGGTGAACTATTTTGTCACAC
GTGTGCATTATTGAGGGATAAGGATGAAAGAGGGAATTCGAATTCGAATTTTTTTTTGGCTTGCTTATTCAACTTGGTTACGCA
Protein sequenceShow/hide protein sequence
MSSAQPAGVYPPPSTVPTSYSAPPPAGYPMRDGGDFSQQPAPVPSQTTSRGDGFWKGCCAALCCCCVLDACF