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Sed0001458 (gene) of Chayote v1 genome

Gene IDSed0001458
OrganismSechium edule (Chayote v1)
Descriptiontranscription termination factor MTERF5, chloroplastic
Genome locationLG10:2645553..2646746
RNA-Seq ExpressionSed0001458
SyntenySed0001458
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0003690 - double-stranded DNA binding (molecular function)
InterPro domainsIPR003690 - Transcription termination factor, mitochondrial/chloroplastic


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022950734.1 transcription termination factor MTERF5, chloroplastic isoform X1 [Cucurbita moschata]8.8e-3069.49Show/hide
Query:  MRAIRAIRFARIFFMPNGTLITTPRIHHSFSRKLFSCQEKCEDSEV-SRSDNFKVVSPALLTAEKEEAKEVLALFLKKQGLSNANAARTIKKSDLFINHL
        M  +  IR ARIFFMPN  LI T R+  SFSRKLFSC+ K  DSE+   S N KVVSPALLTAEKEEAK VL LFLKKQGLSNA AARTI KSDLFINHL
Subjt:  MRAIRAIRFARIFFMPNGTLITTPRIHHSFSRKLFSCQEKCEDSEV-SRSDNFKVVSPALLTAEKEEAKEVLALFLKKQGLSNANAARTIKKSDLFINHL

Query:  VLTLKLHLIYKSRTRIDR
        +  L+LHLI+KSR  + R
Subjt:  VLTLKLHLIYKSRTRIDR
XP_022977506.1 transcription termination factor MTERF5, chloroplastic-like isoform X3 [Cucurbita maxima]5.7e-2968.64Show/hide
Query:  MRAIRAIRFARIFFMPNGTLITTPRIHHSFSRKLFSCQEKCEDSEV-SRSDNFKVVSPALLTAEKEEAKEVLALFLKKQGLSNANAARTIKKSDLFINHL
        M  +  IR A IFFMPN  LI T R+  SFSRKLFSC+ K  DSE+   S N KVVSPALLTAEKEEAK VL LFLKKQGLSNA AARTI KSDLFINHL
Subjt:  MRAIRAIRFARIFFMPNGTLITTPRIHHSFSRKLFSCQEKCEDSEV-SRSDNFKVVSPALLTAEKEEAKEVLALFLKKQGLSNANAARTIKKSDLFINHL

Query:  VLTLKLHLIYKSRTRIDR
        +  L+LHLI+KSR  + R
Subjt:  VLTLKLHLIYKSRTRIDR
XP_023544698.1 transcription termination factor MTERF5, chloroplastic isoform X3 [Cucurbita pepo subsp. pepo]8.8e-3069.49Show/hide
Query:  MRAIRAIRFARIFFMPNGTLITTPRIHHSFSRKLFSCQEKCEDSEV-SRSDNFKVVSPALLTAEKEEAKEVLALFLKKQGLSNANAARTIKKSDLFINHL
        M  +  IR ARIFFMPN  LI T R+  SFSRKLFSC+ K  DSE+   S N KVVSPALLTAEKEEAK VL LFLKKQGLSNA AARTI KSDLFINHL
Subjt:  MRAIRAIRFARIFFMPNGTLITTPRIHHSFSRKLFSCQEKCEDSEV-SRSDNFKVVSPALLTAEKEEAKEVLALFLKKQGLSNANAARTIKKSDLFINHL

Query:  VLTLKLHLIYKSRTRIDR
        +  L+LHLI+KSR  + R
Subjt:  VLTLKLHLIYKSRTRIDR
XP_023544699.1 transcription termination factor MTERF5, chloroplastic isoform X4 [Cucurbita pepo subsp. pepo]9.7e-2967.52Show/hide
Query:  MRAIRAIRFARIFFMPNGTLITTPRIHHSFSRKLFSCQEKCEDSEVSRSDNFKVVSPALLTAEKEEAKEVLALFLKKQGLSNANAARTIKKSDLFINHLV
        M  +  IR ARIFFMPN  LI T R+  SFSRKLFSC+ K +      S N KVVSPALLTAEKEEAK VL LFLKKQGLSNA AARTI KSDLFINHL+
Subjt:  MRAIRAIRFARIFFMPNGTLITTPRIHHSFSRKLFSCQEKCEDSEVSRSDNFKVVSPALLTAEKEEAKEVLALFLKKQGLSNANAARTIKKSDLFINHLV

Query:  LTLKLHLIYKSRTRIDR
          L+LHLI+KSR  + R
Subjt:  LTLKLHLIYKSRTRIDR
XP_038883230.1 transcription termination factor MTERF5, chloroplastic isoform X3 [Benincasa hispida]9.7e-2968.38Show/hide
Query:  MRAIRAIRFARIFFMPNGTLITTPRIHHSFSRKLFSCQEKCEDSEVSRSDNFKVVSPALLTAEKEEAKEVLALFLKKQGLSNANAARTIKKSDLFINHLV
        MRA   + FAR+FFM N +LITT R+  SF RK FSC+ K  DSE+  S N KVVSPALLTAEKEEAK VL LFLKKQGLSNA AARTI KSDLFI+HLV
Subjt:  MRAIRAIRFARIFFMPNGTLITTPRIHHSFSRKLFSCQEKCEDSEVSRSDNFKVVSPALLTAEKEEAKEVLALFLKKQGLSNANAARTIKKSDLFINHLV

Query:  LTLKLHLIYKSRTRIDR
          L+LHLI+KSR  + R
Subjt:  LTLKLHLIYKSRTRIDR
TrEMBL top hitse value%identityAlignment
A0A6J1BZ40 transcription termination factor MTERF5, chloroplastic1.8e-2868.38Show/hide
Query:  MRAIRAIRFARIFFMPNGTLITTPRIHHSFSRKLFSCQEKCEDSEVSRSDNFKVVSPALLTAEKEEAKEVLALFLKKQGLSNANAARTIKKSDLFINHLV
        MRA+  IRF    FMPNG LITT R+  SF RKLFS + K  DSE     N KVVSPALLTAEKEEAK VL LFLKKQG+SNA AARTI KSDLFI+HLV
Subjt:  MRAIRAIRFARIFFMPNGTLITTPRIHHSFSRKLFSCQEKCEDSEVSRSDNFKVVSPALLTAEKEEAKEVLALFLKKQGLSNANAARTIKKSDLFINHLV

Query:  LTLKLHLIYKSRTRIDR
          LKLHLI+KSR  + R
Subjt:  LTLKLHLIYKSRTRIDR
A0A6J1GGK1 transcription termination factor MTERF5, chloroplastic isoform X24.7e-2967.52Show/hide
Query:  MRAIRAIRFARIFFMPNGTLITTPRIHHSFSRKLFSCQEKCEDSEVSRSDNFKVVSPALLTAEKEEAKEVLALFLKKQGLSNANAARTIKKSDLFINHLV
        M  +  IR ARIFFMPN  LI T R+  SFSRKLFSC+ K +      S N KVVSPALLTAEKEEAK VL LFLKKQGLSNA AARTI KSDLFINHL+
Subjt:  MRAIRAIRFARIFFMPNGTLITTPRIHHSFSRKLFSCQEKCEDSEVSRSDNFKVVSPALLTAEKEEAKEVLALFLKKQGLSNANAARTIKKSDLFINHLV

Query:  LTLKLHLIYKSRTRIDR
          L+LHLI+KSR  + R
Subjt:  LTLKLHLIYKSRTRIDR
A0A6J1GGQ0 transcription termination factor MTERF5, chloroplastic isoform X14.3e-3069.49Show/hide
Query:  MRAIRAIRFARIFFMPNGTLITTPRIHHSFSRKLFSCQEKCEDSEV-SRSDNFKVVSPALLTAEKEEAKEVLALFLKKQGLSNANAARTIKKSDLFINHL
        M  +  IR ARIFFMPN  LI T R+  SFSRKLFSC+ K  DSE+   S N KVVSPALLTAEKEEAK VL LFLKKQGLSNA AARTI KSDLFINHL
Subjt:  MRAIRAIRFARIFFMPNGTLITTPRIHHSFSRKLFSCQEKCEDSEV-SRSDNFKVVSPALLTAEKEEAKEVLALFLKKQGLSNANAARTIKKSDLFINHL

Query:  VLTLKLHLIYKSRTRIDR
        +  L+LHLI+KSR  + R
Subjt:  VLTLKLHLIYKSRTRIDR
A0A6J1IIQ0 transcription termination factor MTERF5, chloroplastic-like isoform X43.0e-2866.67Show/hide
Query:  MRAIRAIRFARIFFMPNGTLITTPRIHHSFSRKLFSCQEKCEDSEVSRSDNFKVVSPALLTAEKEEAKEVLALFLKKQGLSNANAARTIKKSDLFINHLV
        M  +  IR A IFFMPN  LI T R+  SFSRKLFSC+ K +      S N KVVSPALLTAEKEEAK VL LFLKKQGLSNA AARTI KSDLFINHL+
Subjt:  MRAIRAIRFARIFFMPNGTLITTPRIHHSFSRKLFSCQEKCEDSEVSRSDNFKVVSPALLTAEKEEAKEVLALFLKKQGLSNANAARTIKKSDLFINHLV

Query:  LTLKLHLIYKSRTRIDR
          L+LHLI+KSR  + R
Subjt:  LTLKLHLIYKSRTRIDR
A0A6J1IK35 transcription termination factor MTERF5, chloroplastic-like isoform X32.8e-2968.64Show/hide
Query:  MRAIRAIRFARIFFMPNGTLITTPRIHHSFSRKLFSCQEKCEDSEV-SRSDNFKVVSPALLTAEKEEAKEVLALFLKKQGLSNANAARTIKKSDLFINHL
        M  +  IR A IFFMPN  LI T R+  SFSRKLFSC+ K  DSE+   S N KVVSPALLTAEKEEAK VL LFLKKQGLSNA AARTI KSDLFINHL
Subjt:  MRAIRAIRFARIFFMPNGTLITTPRIHHSFSRKLFSCQEKCEDSEV-SRSDNFKVVSPALLTAEKEEAKEVLALFLKKQGLSNANAARTIKKSDLFINHL

Query:  VLTLKLHLIYKSRTRIDR
        +  L+LHLI+KSR  + R
Subjt:  VLTLKLHLIYKSRTRIDR
SwissProt top hitse value%identityAlignment
F4JVI3 Transcription termination factor MTERF5, chloroplastic1.2e-1058.73Show/hide
Query:  VSPALLTAEKEEAKEVLALFLKKQGLSNANAARTIKKSDLFINHLVLTLKLHLIYKSRTRIDR
        V P L+ AEKEEAK VL LF KKQGLSN+ ++R I KSDLFI+HLV   +LH ++K+R  + R
Subjt:  VSPALLTAEKEEAKEVLALFLKKQGLSNANAARTIKKSDLFINHLVLTLKLHLIYKSRTRIDR
Arabidopsis top hitse value%identityAlignment
AT4G14605.1 Mitochondrial transcription termination factor family protein8.8e-1258.73Show/hide
Query:  VSPALLTAEKEEAKEVLALFLKKQGLSNANAARTIKKSDLFINHLVLTLKLHLIYKSRTRIDR
        V P L+ AEKEEAK VL LF KKQGLSN+ ++R I KSDLFI+HLV   +LH ++K+R  + R
Subjt:  VSPALLTAEKEEAKEVLALFLKKQGLSNANAARTIKKSDLFINHLVLTLKLHLIYKSRTRIDR

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGAGCTATTCGTGCTATACGATTCGCCCGTATCTTCTTCATGCCAAATGGTACTCTCATCACTACTCCAAGGATTCACCATTCATTCTCAAGGAAACTCTTTTCTTG
CCAAGAAAAATGTGAAGATTCTGAGGTATCTAGATCAGACAACTTCAAGGTTGTATCTCCAGCCCTTCTAACTGCAGAAAAAGAAGAGGCCAAGGAAGTTTTAGCCCTGT
TTTTAAAGAAACAAGGTCTGAGCAATGCAAATGCGGCAAGAACAATAAAGAAGTCCGATCTCTTCATCAACCATCTTGTCTTGACTTTGAAGCTTCATTTGATTTATAAA
TCTCGGACGAGAATTGACCGCATTTAA
mRNA sequenceShow/hide mRNA sequence
ATGAGAGCTATTCGTGCTATACGATTCGCCCGTATCTTCTTCATGCCAAATGGTACTCTCATCACTACTCCAAGGATTCACCATTCATTCTCAAGGAAACTCTTTTCTTG
CCAAGAAAAATGTGAAGATTCTGAGGTATCTAGATCAGACAACTTCAAGGTTGTATCTCCAGCCCTTCTAACTGCAGAAAAAGAAGAGGCCAAGGAAGTTTTAGCCCTGT
TTTTAAAGAAACAAGGTCTGAGCAATGCAAATGCGGCAAGAACAATAAAGAAGTCCGATCTCTTCATCAACCATCTTGTCTTGACTTTGAAGCTTCATTTGATTTATAAA
TCTCGGACGAGAATTGACCGCATTTAA
Protein sequenceShow/hide protein sequence
MRAIRAIRFARIFFMPNGTLITTPRIHHSFSRKLFSCQEKCEDSEVSRSDNFKVVSPALLTAEKEEAKEVLALFLKKQGLSNANAARTIKKSDLFINHLVLTLKLHLIYK
SRTRIDRI