; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Sed0001461 (gene) of Chayote v1 genome

Gene IDSed0001461
OrganismSechium edule (Chayote v1)
Description60S ribosomal protein L18a-like protein
Genome locationLG04:38099318..38102437
RNA-Seq ExpressionSed0001461
SyntenySed0001461
Gene Ontology termsGO:0005840 - ribosome (cellular component)
GO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR044804 - AT1G29970-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008452440.1 PREDICTED: 60S ribosomal protein L18a-like protein [Cucumis melo]1.6e-6377.78Show/hide
Query:  MSSEDKSAAVGVVVHHHHQPDSGHPHYGTFQGVANYPPVGFPQPTRPATASDSYDPSQTQPYAHTYQPIHGYAIAEGRPVREPRLPCCGIGCGWFLFIFG
        MS EDKSAAVGVVVHHHH+ +S HPHYGTFQGVANYPPV FPQPTRP   SDS DPSQ Q YAH YQ + GYAI EGRPVREP LPCCGIG GWFLFI G
Subjt:  MSSEDKSAAVGVVVHHHHQPDSGHPHYGTFQGVANYPPVGFPQPTRPATASDSYDPSQTQPYAHTYQPIHGYAIAEGRPVREPRLPCCGIGCGWFLFIFG

Query:  FFLAGIPWYLGAFLVLFSRVDYREKPGYVACSIAAVLVTVAVLFGATKGADIW
        FFLA IPWY GA L+L  RVDYREKPGYVACSIAAV+ T+A++FGAT+ AD+W
Subjt:  FFLAGIPWYLGAFLVLFSRVDYREKPGYVACSIAAVLVTVAVLFGATKGADIW

XP_022135554.1 60S ribosomal protein L18a-like protein [Momordica charantia]1.7e-6274.68Show/hide
Query:  MSSEDK-SAAVGVVVHHHHQPDSGHPHYGTFQGVANYPPVGFPQPTRPATASDSYDPSQTQPYAHTYQPIHGYAIAEGRPVREPRLPCCGIGCGWFLFIF
        MS E+K +AA GVVVHHHH+ +SGHP YGTFQGVANYPPVGFPQP RP  ASDSYDPSQ+QPYAH YQ + GYAI EGRPVRE RLPCCGIG GWFLFI 
Subjt:  MSSEDK-SAAVGVVVHHHHQPDSGHPHYGTFQGVANYPPVGFPQPTRPATASDSYDPSQTQPYAHTYQPIHGYAIAEGRPVREPRLPCCGIGCGWFLFIF

Query:  GFFLAGIPWYLGAFLVLFSRVDYREKPGYVACSIAAVLVTVAVLFGATKGADIW
        GFF+ GIPWY GA ++L  RVDYREKPGYVAC+IAA+L T+A++ G TKG D+W
Subjt:  GFFLAGIPWYLGAFLVLFSRVDYREKPGYVACSIAAVLVTVAVLFGATKGADIW

XP_022976878.1 60S ribosomal protein L18a-like protein [Cucurbita maxima]6.6e-6277.12Show/hide
Query:  MSSEDKSAAVGVVVHHHHQPDSGHPHYGTFQGVANYPPVGFPQPTRPATASDSYDPSQTQPYAHTYQPIHGYAIAEGRPVREPRLPCCGIGCGWFLFIFG
        MS EDKSAAVGVVVHHHH+P+ GHPHYGTFQGVANYPPVGFPQPTRP   SD  D SQ Q YAH YQ + GYAI EGRPVREPRLPCCGIG GWFLFI G
Subjt:  MSSEDKSAAVGVVVHHHHQPDSGHPHYGTFQGVANYPPVGFPQPTRPATASDSYDPSQTQPYAHTYQPIHGYAIAEGRPVREPRLPCCGIGCGWFLFIFG

Query:  FFLAGIPWYLGAFLVLFSRVDYREKPGYVACSIAAVLVTVAVLFGATKGADIW
        F L    WY+GA L+L  RV YREKPGYVACSIAAV+ TVA++FGATKGAD+W
Subjt:  FFLAGIPWYLGAFLVLFSRVDYREKPGYVACSIAAVLVTVAVLFGATKGADIW

XP_023536200.1 60S ribosomal protein L18a-like protein [Cucurbita pepo subsp. pepo]5.1e-6277.12Show/hide
Query:  MSSEDKSAAVGVVVHHHHQPDSGHPHYGTFQGVANYPPVGFPQPTRPATASDSYDPSQTQPYAHTYQPIHGYAIAEGRPVREPRLPCCGIGCGWFLFIFG
        MS EDKSAAVGVVVHHHH+P+ GHPHYGTFQGVANYPPVGFPQPTRP   SD  D SQ Q YAH YQ + GYAI EGRPVREPRLPCCGIG GWFLFI G
Subjt:  MSSEDKSAAVGVVVHHHHQPDSGHPHYGTFQGVANYPPVGFPQPTRPATASDSYDPSQTQPYAHTYQPIHGYAIAEGRPVREPRLPCCGIGCGWFLFIFG

Query:  FFLAGIPWYLGAFLVLFSRVDYREKPGYVACSIAAVLVTVAVLFGATKGADIW
        F L    WY+GA L+L  RV YREKPGYVACSIAAV+ TVA++FGATKGAD+W
Subjt:  FFLAGIPWYLGAFLVLFSRVDYREKPGYVACSIAAVLVTVAVLFGATKGADIW

XP_038896754.1 60S ribosomal protein L18a-like protein [Benincasa hispida]1.3e-6278.43Show/hide
Query:  MSSEDKSAAVGVVVHHHHQPDSGHPHYGTFQGVANYPPVGFPQPTRPATASDSYDPSQTQPYAHTYQPIHGYAIAEGRPVREPRLPCCGIGCGWFLFIFG
        MS EDKSAAVGVVVHHHH+ +SGHP YGTFQGVANYPPVGFPQPTRP   SDS DPSQ Q YAH YQ + GY I EGRPVRE RLPCCGIG GWFLFI G
Subjt:  MSSEDKSAAVGVVVHHHHQPDSGHPHYGTFQGVANYPPVGFPQPTRPATASDSYDPSQTQPYAHTYQPIHGYAIAEGRPVREPRLPCCGIGCGWFLFIFG

Query:  FFLAGIPWYLGAFLVLFSRVDYREKPGYVACSIAAVLVTVAVLFGATKGADIW
        FFLA IPWY GA L+L  RVDYREKPGYVAC IAAVL TVA++FGAT+ AD W
Subjt:  FFLAGIPWYLGAFLVLFSRVDYREKPGYVACSIAAVLVTVAVLFGATKGADIW

TrEMBL top hitse value%identityAlignment
A0A0A0L1Y0 Uncharacterized protein5.5e-6275.82Show/hide
Query:  MSSEDKSAAVGVVVHHHHQPDSGHPHYGTFQGVANYPPVGFPQPTRPATASDSYDPSQTQPYAHTYQPIHGYAIAEGRPVREPRLPCCGIGCGWFLFIFG
        MS +DKSAAVGVVVHHHH+ +S HPHYGTFQGVANYPPVGF  PTR     DS DPSQ Q YAH YQ + GYAI EGRPVREPRLPCCGIG GWFLFI G
Subjt:  MSSEDKSAAVGVVVHHHHQPDSGHPHYGTFQGVANYPPVGFPQPTRPATASDSYDPSQTQPYAHTYQPIHGYAIAEGRPVREPRLPCCGIGCGWFLFIFG

Query:  FFLAGIPWYLGAFLVLFSRVDYREKPGYVACSIAAVLVTVAVLFGATKGADIW
        FFLA IPWY GA L++  RVDYREKPGYVACSIAAV+ TVA++FGAT+ AD+W
Subjt:  FFLAGIPWYLGAFLVLFSRVDYREKPGYVACSIAAVLVTVAVLFGATKGADIW

A0A1S3BUZ1 60S ribosomal protein L18a-like protein7.6e-6477.78Show/hide
Query:  MSSEDKSAAVGVVVHHHHQPDSGHPHYGTFQGVANYPPVGFPQPTRPATASDSYDPSQTQPYAHTYQPIHGYAIAEGRPVREPRLPCCGIGCGWFLFIFG
        MS EDKSAAVGVVVHHHH+ +S HPHYGTFQGVANYPPV FPQPTRP   SDS DPSQ Q YAH YQ + GYAI EGRPVREP LPCCGIG GWFLFI G
Subjt:  MSSEDKSAAVGVVVHHHHQPDSGHPHYGTFQGVANYPPVGFPQPTRPATASDSYDPSQTQPYAHTYQPIHGYAIAEGRPVREPRLPCCGIGCGWFLFIFG

Query:  FFLAGIPWYLGAFLVLFSRVDYREKPGYVACSIAAVLVTVAVLFGATKGADIW
        FFLA IPWY GA L+L  RVDYREKPGYVACSIAAV+ T+A++FGAT+ AD+W
Subjt:  FFLAGIPWYLGAFLVLFSRVDYREKPGYVACSIAAVLVTVAVLFGATKGADIW

A0A5D3D9U1 60S ribosomal protein L18a-like protein7.6e-6477.78Show/hide
Query:  MSSEDKSAAVGVVVHHHHQPDSGHPHYGTFQGVANYPPVGFPQPTRPATASDSYDPSQTQPYAHTYQPIHGYAIAEGRPVREPRLPCCGIGCGWFLFIFG
        MS EDKSAAVGVVVHHHH+ +S HPHYGTFQGVANYPPV FPQPTRP   SDS DPSQ Q YAH YQ + GYAI EGRPVREP LPCCGIG GWFLFI G
Subjt:  MSSEDKSAAVGVVVHHHHQPDSGHPHYGTFQGVANYPPVGFPQPTRPATASDSYDPSQTQPYAHTYQPIHGYAIAEGRPVREPRLPCCGIGCGWFLFIFG

Query:  FFLAGIPWYLGAFLVLFSRVDYREKPGYVACSIAAVLVTVAVLFGATKGADIW
        FFLA IPWY GA L+L  RVDYREKPGYVACSIAAV+ T+A++FGAT+ AD+W
Subjt:  FFLAGIPWYLGAFLVLFSRVDYREKPGYVACSIAAVLVTVAVLFGATKGADIW

A0A6J1C1R6 60S ribosomal protein L18a-like protein8.4e-6374.68Show/hide
Query:  MSSEDK-SAAVGVVVHHHHQPDSGHPHYGTFQGVANYPPVGFPQPTRPATASDSYDPSQTQPYAHTYQPIHGYAIAEGRPVREPRLPCCGIGCGWFLFIF
        MS E+K +AA GVVVHHHH+ +SGHP YGTFQGVANYPPVGFPQP RP  ASDSYDPSQ+QPYAH YQ + GYAI EGRPVRE RLPCCGIG GWFLFI 
Subjt:  MSSEDK-SAAVGVVVHHHHQPDSGHPHYGTFQGVANYPPVGFPQPTRPATASDSYDPSQTQPYAHTYQPIHGYAIAEGRPVREPRLPCCGIGCGWFLFIF

Query:  GFFLAGIPWYLGAFLVLFSRVDYREKPGYVACSIAAVLVTVAVLFGATKGADIW
        GFF+ GIPWY GA ++L  RVDYREKPGYVAC+IAA+L T+A++ G TKG D+W
Subjt:  GFFLAGIPWYLGAFLVLFSRVDYREKPGYVACSIAAVLVTVAVLFGATKGADIW

A0A6J1INF5 60S ribosomal protein L18a-like protein3.2e-6277.12Show/hide
Query:  MSSEDKSAAVGVVVHHHHQPDSGHPHYGTFQGVANYPPVGFPQPTRPATASDSYDPSQTQPYAHTYQPIHGYAIAEGRPVREPRLPCCGIGCGWFLFIFG
        MS EDKSAAVGVVVHHHH+P+ GHPHYGTFQGVANYPPVGFPQPTRP   SD  D SQ Q YAH YQ + GYAI EGRPVREPRLPCCGIG GWFLFI G
Subjt:  MSSEDKSAAVGVVVHHHHQPDSGHPHYGTFQGVANYPPVGFPQPTRPATASDSYDPSQTQPYAHTYQPIHGYAIAEGRPVREPRLPCCGIGCGWFLFIFG

Query:  FFLAGIPWYLGAFLVLFSRVDYREKPGYVACSIAAVLVTVAVLFGATKGADIW
        F L    WY+GA L+L  RV YREKPGYVACSIAAV+ TVA++FGATKGAD+W
Subjt:  FFLAGIPWYLGAFLVLFSRVDYREKPGYVACSIAAVLVTVAVLFGATKGADIW

SwissProt top hitse value%identityAlignment
Q8L9S1 60S ribosomal protein L18a-like protein9.1e-3048.97Show/hide
Query:  HYGTFQGVANYPPVGFPQPTRPATASDSYDPSQTQPYAHTYQPIHG-----------------YAIAEGRPVREPRLPCCGIGCGWFLFIFGFFLAGIPW
        +YGTFQGVAN     FP PT P        P  T P  H YQ + G                 Y + E RP+ E  LPCCG+G GWFLFI GF   GIPW
Subjt:  HYGTFQGVANYPPVGFPQPTRPATASDSYDPSQTQPYAHTYQPIHG-----------------YAIAEGRPVREPRLPCCGIGCGWFLFIFGFFLAGIPW

Query:  YLGAFLVLFSRVDYREKPGYVACSIAAVLVTVAVLFGATKGADIW
        YLGAF+VL + VD+REK GYVACSIA+V+  +AV+ G T   +IW
Subjt:  YLGAFLVLFSRVDYREKPGYVACSIAAVLVTVAVLFGATKGADIW

Arabidopsis top hitse value%identityAlignment
AT1G17080.1 Ribosomal protein L18ae family2.1e-4260.71Show/hide
Query:  HPHYGTFQGVANYPP-------VGFPQPTRPATASDSYDPSQTQPYAHTYQ--PIHGYAIAEGRPVREPRLPCCGIGCGWFLFIFGFFLAGIPWYLGAFL
        H  YGTFQGV+NYPP        GFPQP+ P    DS  P     YAH YQ  P+HG  +AEGRPVR+ RLPCCGIG GWFLFI GFFL  IPWY+G F+
Subjt:  HPHYGTFQGVANYPP-------VGFPQPTRPATASDSYDPSQTQPYAHTYQ--PIHGYAIAEGRPVREPRLPCCGIGCGWFLFIFGFFLAGIPWYLGAFL

Query:  VLFS-RVDYREKPGYVACSIAAVLVTVAVLFGATKGADIW
        ++F  R+DYREKPGY+AC+IAA+L T+AV+ G +KGAD W
Subjt:  VLFS-RVDYREKPGYVACSIAAVLVTVAVLFGATKGADIW

AT1G29970.1 60S ribosomal protein L18A-16.4e-3148.97Show/hide
Query:  HYGTFQGVANYPPVGFPQPTRPATASDSYDPSQTQPYAHTYQPIHG-----------------YAIAEGRPVREPRLPCCGIGCGWFLFIFGFFLAGIPW
        +YGTFQGVAN     FP PT P        P  T P  H YQ + G                 Y + E RP+ E  LPCCG+G GWFLFI GF   GIPW
Subjt:  HYGTFQGVANYPPVGFPQPTRPATASDSYDPSQTQPYAHTYQPIHG-----------------YAIAEGRPVREPRLPCCGIGCGWFLFIFGFFLAGIPW

Query:  YLGAFLVLFSRVDYREKPGYVACSIAAVLVTVAVLFGATKGADIW
        YLGAF+VL + VD+REK GYVACSIA+V+  +AV+ G T   +IW
Subjt:  YLGAFLVLFSRVDYREKPGYVACSIAAVLVTVAVLFGATKGADIW

AT1G29970.2 60S ribosomal protein L18A-19.6e-2750.79Show/hide
Query:  HYGTFQGVANYPPVGFPQPTRPATASDSYDPSQTQPYAHTYQPIHG-----------------YAIAEGRPVREPRLPCCGIGCGWFLFIFGFFLAGIPW
        +YGTFQGVAN     FP PT P        P  T P  H YQ + G                 Y + E RP+ E  LPCCG+G GWFLFI GF   GIPW
Subjt:  HYGTFQGVANYPPVGFPQPTRPATASDSYDPSQTQPYAHTYQPIHG-----------------YAIAEGRPVREPRLPCCGIGCGWFLFIFGFFLAGIPW

Query:  YLGAFLVLFSRVDYREKPGYVACSIA
        YLGAF+VL + VD+REK GYVACSIA
Subjt:  YLGAFLVLFSRVDYREKPGYVACSIA

AT1G53560.1 Ribosomal protein L18ae family9.6e-3549.64Show/hide
Query:  YGTFQGVANYPP------------VGFPQPTRPATASDSYDPSQTQPYAHTYQPIHGYAIAEGRPVREPRLPCCGIGCGWFLFIFGFFLAGIPWYLGAFL
        YGTFQGV  YPP            +G PQP+ P   S  +D S  Q Y   +Q + GY +++GRP R+ RLPCCG+G GWFLFI GF L  IPWY+G F+
Subjt:  YGTFQGVANYPP------------VGFPQPTRPATASDSYDPSQTQPYAHTYQPIHGYAIAEGRPVREPRLPCCGIGCGWFLFIFGFFLAGIPWYLGAFL

Query:  VLFSRVDYREKPGYVACSIAAVLVTVAVLFGATKGADIW
        ++ +R+D REKPGYVAC+IAAV+ T+ ++FG   G  +W
Subjt:  VLFSRVDYREKPGYVACSIAAVLVTVAVLFGATKGADIW

AT3G14595.1 Ribosomal protein L18ae family1.4e-2546Show/hide
Query:  EDKSAAVGVVVHHHHQPDSGHPHYGTFQGVANYPPVGFPQPTRPATASDSYDPSQTQPYAHTYQPIHGYAIAEGRPVREPRLPCCGIGCGWFLFIFGFFL
        +DK+ +  VV  H HQ     P    FQGV+NYP    PQ   PAT      P   QPYA       GY +   RP    R  CCGIG GW LFI GFF 
Subjt:  EDKSAAVGVVVHHHHQPDSGHPHYGTFQGVANYPPVGFPQPTRPATASDSYDPSQTQPYAHTYQPIHGYAIAEGRPVREPRLPCCGIGCGWFLFIFGFFL

Query:  AGIPWYLGAFLVLFSRVDYREKPGYVACSIAAVLVTVAVLFGATKGADIW
        A +PWY+G FL+LFSR + RE+PGY+AC++ AV  T+ V+FG  +G+ +W
Subjt:  AGIPWYLGAFLVLFSRVDYREKPGYVACSIAAVLVTVAVLFGATKGADIW


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGCTCGGAAGACAAATCCGCCGCCGTGGGGGTCGTCGTCCACCACCACCACCAACCCGATTCCGGCCACCCTCACTACGGAACTTTCCAAGGCGTCGCCAACTATCC
TCCCGTCGGATTTCCCCAGCCGACTCGCCCAGCCACTGCCTCCGACTCTTACGATCCTTCTCAAACTCAGCCCTACGCTCACACATATCAACCAATCCATGGATATGCTA
TCGCTGAAGGAAGACCAGTGAGAGAGCCGCGCCTTCCTTGCTGTGGTATTGGCTGTGGGTGGTTCCTGTTCATATTTGGTTTCTTCCTAGCTGGTATCCCATGGTATTTA
GGGGCATTTCTTGTACTATTTAGCAGGGTAGACTACCGTGAGAAACCAGGATATGTTGCTTGCTCAATTGCTGCTGTTCTTGTAACAGTTGCTGTGTTATTCGGTGCAAC
AAAGGGAGCTGATATCTGGTAA
mRNA sequenceShow/hide mRNA sequence
CTTTCAAAAAAAAAAAAAAGATTTCTTAATTATTACATTAATTTGGGATACCCTAAAGAAAAGATTTCTTAATTATTATATTTGGTAAATGAAATGTTCATTTAATTTCA
ATTACAAGAGAAGCCACACACAAGTCACAGGTCTCGTTCTACGTTCTGATCCATTACAATCTTCAAGTCTCCGTTTCTGAGAAAATGAGCTCGGAAGACAAATCCGCCGC
CGTGGGGGTCGTCGTCCACCACCACCACCAACCCGATTCCGGCCACCCTCACTACGGAACTTTCCAAGGCGTCGCCAACTATCCTCCCGTCGGATTTCCCCAGCCGACTC
GCCCAGCCACTGCCTCCGACTCTTACGATCCTTCTCAAACTCAGCCCTACGCTCACACATATCAACCAATCCATGGATATGCTATCGCTGAAGGAAGACCAGTGAGAGAG
CCGCGCCTTCCTTGCTGTGGTATTGGCTGTGGGTGGTTCCTGTTCATATTTGGTTTCTTCCTAGCTGGTATCCCATGGTATTTAGGGGCATTTCTTGTACTATTTAGCAG
GGTAGACTACCGTGAGAAACCAGGATATGTTGCTTGCTCAATTGCTGCTGTTCTTGTAACAGTTGCTGTGTTATTCGGTGCAACAAAGGGAGCTGATATCTGGTAACCAA
TCCTGAACCAAAAATATTGTATAGTTTGCAAATATGTATGAACACAACACAATCCACTAAATTTGAGCACATCATCTTCAAGCTAGTTCCATTAAAACCTGAATTTGTGA
GACTTTTAGAGCCTATGGATATTCTGCAAAATAATGTTATTTATTTATTCTATGATTGTGTCCAAATATGTATTATGACTAACAATTTGTCTGAAACTCCTCTGTTGGAT
TGCACTCATCTTTTGGTAAATATATCTCTTCTTTGTTGTGTTGGAATGAACATTTGAATATCGAAACAGAAAACTGTTTTTCGCCGA
Protein sequenceShow/hide protein sequence
MSSEDKSAAVGVVVHHHHQPDSGHPHYGTFQGVANYPPVGFPQPTRPATASDSYDPSQTQPYAHTYQPIHGYAIAEGRPVREPRLPCCGIGCGWFLFIFGFFLAGIPWYL
GAFLVLFSRVDYREKPGYVACSIAAVLVTVAVLFGATKGADIW