; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Sed0001513 (gene) of Chayote v1 genome

Gene IDSed0001513
OrganismSechium edule (Chayote v1)
DescriptionDNA double-strand break repair rad50 ATPase
Genome locationLG08:29435175..29439374
RNA-Seq ExpressionSed0001513
SyntenySed0001513
Gene Ontology termsGO:0005747 - mitochondrial respiratory chain complex I (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6588894.1 hypothetical protein SDJN03_17459, partial [Cucurbita argyrosperma subsp. sororia]4.1e-0945.67Show/hide
Query:  MALTNFILTVAGVSAVVLLLRSDVKQSASIFRRNKMVWKFPFGTMDGRESAAEKSMKMEKGRDGAKWRFTNERGARMRHGREHSSLPLLEEVPGEESKNG
        MALTNFILTVAGVSAVVLLLRSDVKQSASIFRRN                                          ++H R+            EE    
Subjt:  MALTNFILTVAGVSAVVLLLRSDVKQSASIFRRNKMVWKFPFGTMDGRESAAEKSMKMEKGRDGAKWRFTNERGARMRHGREHSSLPLLEEVPGEESKNG

Query:  KRKRQKKATKELEAKNPHKDIPKDDKH
          K  +KATKELE+K PHKDIPKDDKH
Subjt:  KRKRQKKATKELEAKNPHKDIPKDDKH

KAG7022659.1 hypothetical protein SDJN02_16393 [Cucurbita argyrosperma subsp. argyrosperma]4.1e-0945.67Show/hide
Query:  MALTNFILTVAGVSAVVLLLRSDVKQSASIFRRNKMVWKFPFGTMDGRESAAEKSMKMEKGRDGAKWRFTNERGARMRHGREHSSLPLLEEVPGEESKNG
        MALTNFILTVAGVSAVVLLLRSDVKQSASIFRRN                                          ++H R+            EE    
Subjt:  MALTNFILTVAGVSAVVLLLRSDVKQSASIFRRNKMVWKFPFGTMDGRESAAEKSMKMEKGRDGAKWRFTNERGARMRHGREHSSLPLLEEVPGEESKNG

Query:  KRKRQKKATKELEAKNPHKDIPKDDKH
          K  +KATKELE+K PHKDIPKDDKH
Subjt:  KRKRQKKATKELEAKNPHKDIPKDDKH

XP_022156517.1 uncharacterized protein LOC111023400 [Momordica charantia]3.0e-0744.09Show/hide
Query:  MALTNFILTVAGVSAVVLLLRSDVKQSASIFRRNKMVWKFPFGTMDGRESAAEKSMKMEKGRDGAKWRFTNERGARMRHGREHSSLPLLEEVPGEESKNG
        MALTNFILTVAGVSAV+LLLRSDVKQSASIFRRN                                          ++H R+            EE    
Subjt:  MALTNFILTVAGVSAVVLLLRSDVKQSASIFRRNKMVWKFPFGTMDGRESAAEKSMKMEKGRDGAKWRFTNERGARMRHGREHSSLPLLEEVPGEESKNG

Query:  KRKRQKKATKELEAKNPHKDIPKDDKH
          K  +KATKELEAK   KDIPKDDKH
Subjt:  KRKRQKKATKELEAKNPHKDIPKDDKH

XP_023531886.1 uncharacterized protein LOC111794015 [Cucurbita pepo subsp. pepo]9.2e-0944.88Show/hide
Query:  MALTNFILTVAGVSAVVLLLRSDVKQSASIFRRNKMVWKFPFGTMDGRESAAEKSMKMEKGRDGAKWRFTNERGARMRHGREHSSLPLLEEVPGEESKNG
        MALTNFILTVAGVSAVV+LLRSDVKQSASIFRRN                                          ++H R+            EE    
Subjt:  MALTNFILTVAGVSAVVLLLRSDVKQSASIFRRNKMVWKFPFGTMDGRESAAEKSMKMEKGRDGAKWRFTNERGARMRHGREHSSLPLLEEVPGEESKNG

Query:  KRKRQKKATKELEAKNPHKDIPKDDKH
          K  +KATKELE+K PHKDIPKDDKH
Subjt:  KRKRQKKATKELEAKNPHKDIPKDDKH

XP_038899134.1 uncharacterized protein LOC120086491 [Benincasa hispida]1.3e-0744.88Show/hide
Query:  MALTNFILTVAGVSAVVLLLRSDVKQSASIFRRNKMVWKFPFGTMDGRESAAEKSMKMEKGRDGAKWRFTNERGARMRHGREHSSLPLLEEVPGEESKNG
        MALTNFILTVAGVSAVVLLLRSDVKQSASIFRRN                                          ++H R+            EE    
Subjt:  MALTNFILTVAGVSAVVLLLRSDVKQSASIFRRNKMVWKFPFGTMDGRESAAEKSMKMEKGRDGAKWRFTNERGARMRHGREHSSLPLLEEVPGEESKNG

Query:  KRKRQKKATKELEAKNPHKDIPKDDKH
          K  +KATKELEAK   KDIPKDDKH
Subjt:  KRKRQKKATKELEAKNPHKDIPKDDKH

TrEMBL top hitse value%identityAlignment
A0A1S3BPI5 uncharacterized protein LOC1034917995.4e-0742.52Show/hide
Query:  MALTNFILTVAGVSAVVLLLRSDVKQSASIFRRNKMVWKFPFGTMDGRESAAEKSMKMEKGRDGAKWRFTNERGARMRHGREHSSLPLLEEVPGEESKNG
        MALTNFILTVAGVSAVVLLLRSDVKQSA+IFRRN                                         ++RH  E  S               
Subjt:  MALTNFILTVAGVSAVVLLLRSDVKQSASIFRRNKMVWKFPFGTMDGRESAAEKSMKMEKGRDGAKWRFTNERGARMRHGREHSSLPLLEEVPGEESKNG

Query:  KRKRQKKATKELEAKNPHKDIPKDDKH
          K  +K TKELE+K   KDIPKDDKH
Subjt:  KRKRQKKATKELEAKNPHKDIPKDDKH

A0A6J1DS71 uncharacterized protein LOC1110234001.4e-0744.09Show/hide
Query:  MALTNFILTVAGVSAVVLLLRSDVKQSASIFRRNKMVWKFPFGTMDGRESAAEKSMKMEKGRDGAKWRFTNERGARMRHGREHSSLPLLEEVPGEESKNG
        MALTNFILTVAGVSAV+LLLRSDVKQSASIFRRN                                          ++H R+            EE    
Subjt:  MALTNFILTVAGVSAVVLLLRSDVKQSASIFRRNKMVWKFPFGTMDGRESAAEKSMKMEKGRDGAKWRFTNERGARMRHGREHSSLPLLEEVPGEESKNG

Query:  KRKRQKKATKELEAKNPHKDIPKDDKH
          K  +KATKELEAK   KDIPKDDKH
Subjt:  KRKRQKKATKELEAKNPHKDIPKDDKH

A0A6J1FA54 uncharacterized protein LOC1114422021.9e-0744.09Show/hide
Query:  MALTNFILTVAGVSAVVLLLRSDVKQSASIFRRNKMVWKFPFGTMDGRESAAEKSMKMEKGRDGAKWRFTNERGARMRHGREHSSLPLLEEVPGEESKNG
        MALTNFILTVAGV AVVLLLRSDVKQSASIFRRN                                          ++H R+            EE    
Subjt:  MALTNFILTVAGVSAVVLLLRSDVKQSASIFRRNKMVWKFPFGTMDGRESAAEKSMKMEKGRDGAKWRFTNERGARMRHGREHSSLPLLEEVPGEESKNG

Query:  KRKRQKKATKELEAKNPHKDIPKDDKH
          K  +KATKELEAK   KDIPKDDKH
Subjt:  KRKRQKKATKELEAKNPHKDIPKDDKH

A0A6J1J664 uncharacterized protein LOC1114821241.9e-0744.09Show/hide
Query:  MALTNFILTVAGVSAVVLLLRSDVKQSASIFRRNKMVWKFPFGTMDGRESAAEKSMKMEKGRDGAKWRFTNERGARMRHGREHSSLPLLEEVPGEESKNG
        MALTNFILTVAGV AVVLLLRSDVKQSASIFRRN                                          ++H R+            EE    
Subjt:  MALTNFILTVAGVSAVVLLLRSDVKQSASIFRRNKMVWKFPFGTMDGRESAAEKSMKMEKGRDGAKWRFTNERGARMRHGREHSSLPLLEEVPGEESKNG

Query:  KRKRQKKATKELEAKNPHKDIPKDDKH
          K  +KATKELEAK   KDIPKDDKH
Subjt:  KRKRQKKATKELEAKNPHKDIPKDDKH

A0A6J5WFJ0 Uncharacterized protein9.3e-0744.12Show/hide
Query:  MALTNFILTVAGVSAVVLLLRSDVKQSASIFRRN-KMVWKFPFGTMDGRESAAEKSMKMEKGRDGAKWRFTNERGARMRHGREHSSLPLLEEVPG----E
        MALTNFILTVAGVSAVVLLLRSDVKQSA++FRRN K + K+        E  +  + K++K              A++ HG       LL ++P     E
Subjt:  MALTNFILTVAGVSAVVLLLRSDVKQSASIFRRN-KMVWKFPFGTMDGRESAAEKSMKMEKGRDGAKWRFTNERGARMRHGREHSSLPLLEEVPG----E

Query:  ESKNGKRKRQ----KKATKELEAKNPHKDIPKDDKH
        +S N   K       + TKELE+K   K+IPK+DKH
Subjt:  ESKNGKRKRQ----KKATKELEAKNPHKDIPKDDKH

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT5G14105.1 unknown protein1.8e-0779.41Show/hide
Query:  MALTNFILTVAGVSAVVLLLRSDVKQSASIFRRN
        M LTNFILTVAGV AVV+LLRSDVKQS ++ RRN
Subjt:  MALTNFILTVAGVSAVVLLLRSDVKQSASIFRRN


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCTTAACCAACTTCATCTTGACGGTGGCCGGCGTTAGCGCCGTGGTTCTTCTTCTGAGGAGCGATGTGAAACAATCGGCTTCGATCTTCCGCCGCAACAAAATGGT
ATGGAAGTTTCCTTTTGGAACAATGGATGGAAGAGAATCAGCCGCTGAGAAGAGTATGAAAATGGAAAAAGGACGAGATGGTGCTAAGTGGCGATTTACCAACGAGCGGG
GTGCCAGAATGCGTCATGGGAGAGAACATTCCTCACTCCCATTGTTGGAGGAAGTGCCTGGAGAAGAGAGTAAAAATGGGAAAAGGAAGAGACAGAAGAAAGCAACCAAG
GAGCTGGAAGCCAAGAATCCTCATAAAGATATTCCCAAAGATGACAAGCACTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCCTTAACCAACTTCATCTTGACGGTGGCCGGCGTTAGCGCCGTGGTTCTTCTTCTGAGGAGCGATGTGAAACAATCGGCTTCGATCTTCCGCCGCAACAAAATGGT
ATGGAAGTTTCCTTTTGGAACAATGGATGGAAGAGAATCAGCCGCTGAGAAGAGTATGAAAATGGAAAAAGGACGAGATGGTGCTAAGTGGCGATTTACCAACGAGCGGG
GTGCCAGAATGCGTCATGGGAGAGAACATTCCTCACTCCCATTGTTGGAGGAAGTGCCTGGAGAAGAGAGTAAAAATGGGAAAAGGAAGAGACAGAAGAAAGCAACCAAG
GAGCTGGAAGCCAAGAATCCTCATAAAGATATTCCCAAAGATGACAAGCACTGA
Protein sequenceShow/hide protein sequence
MALTNFILTVAGVSAVVLLLRSDVKQSASIFRRNKMVWKFPFGTMDGRESAAEKSMKMEKGRDGAKWRFTNERGARMRHGREHSSLPLLEEVPGEESKNGKRKRQKKATK
ELEAKNPHKDIPKDDKH