CuGenDBv2

Gene ID	Sed0001531
Organism	Sechium edule (Chayote v1)
Description	LOW QUALITY PROTEIN: uncharacterized protein At4g13200, chloroplastic
Genome location	LG07:1762197..1765334
RNA-Seq Expression	Sed0001531
Synteny	Sed0001531
Gene Ontology terms	GO:0010027 - thylakoid membrane organization (biological process) GO:0009535 - chloroplast thylakoid membrane (cellular component)
InterPro domains	IPR040003 - Plastoglobular protein 18-like

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG6592865.1 putative protein, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]

3.4e-60

73.02

Show/hide

Query:  MSSAARPSISPSHFSVLHTNPKVTHYSSPSFAVFPSSSTQSSLKFRGISQTRPIGSPRFVARCSSGDGDSRTVLDAFFLGKALAEALTERIESTIGEVLG
        M+S   PS+SPSHFS+LH+ PK+TH+SSP           S+LKFR IS   PIGSPRFV RCSSGDGDSRTVL+AFFLGKALAEALTER+ESTIGEVL 
Subjt:  MSSAARPSISPSHFSVLHTNPKVTHYSSPSFAVFPSSSTQSSLKFRGISQTRPIGSPRFVARCSSGDGDSRTVLDAFFLGKALAEALTERIESTIGEVLG

Query:  GIGMLQAEQQKKIIDFQEEVIERAKKAKDKAARDAKEVPGPI--SSSIISPTAEVTSSPTTSTNRQQLSSLEPDSGTAVNQDPLLGGEE
        GIG LQAEQQK+I+DFQEEV+ERAKKA++KAARDAKEV GPI  SSSI SPT EV SS T+STN+QQLS+   DSGTA NQDP LGGEE
Subjt:  GIGMLQAEQQKKIIDFQEEVIERAKKAKDKAARDAKEVPGPI--SSSIISPTAEVTSSPTTSTNRQQLSSLEPDSGTAVNQDPLLGGEE

XP_022960100.1 uncharacterized protein At4g13200, chloroplastic-like [Cucurbita moschata]

1.7e-59

72.49

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Query:  MSSAARPSISPSHFSVLHTNPKVTHYSSPSFAVFPSSSTQSSLKFRGISQTRPIGSPRFVARCSSGDGDSRTVLDAFFLGKALAEALTERIESTIGEVLG
        M+S   PS+SPSHFS+LH+ PK+TH+SSP           S+LKFR IS   PIGSPRFV RCSSGDGDSRTVL+AFFLGKALAEALTER+ESTIGEVL 
Subjt:  MSSAARPSISPSHFSVLHTNPKVTHYSSPSFAVFPSSSTQSSLKFRGISQTRPIGSPRFVARCSSGDGDSRTVLDAFFLGKALAEALTERIESTIGEVLG

Query:  GIGMLQAEQQKKIIDFQEEVIERAKKAKDKAARDAKEVPGPI--SSSIISPTAEVTSSPTTSTNRQQLSSLEPDSGTAVNQDPLLGGEE
        GIG LQAEQQK+ +DFQEEV+ERAKKA++KAARDAKEV GPI  SSSI SPT EV SS T+STN+QQLS+   DSGTA NQDP LGGEE
Subjt:  GIGMLQAEQQKKIIDFQEEVIERAKKAKDKAARDAKEVPGPI--SSSIISPTAEVTSSPTTSTNRQQLSSLEPDSGTAVNQDPLLGGEE

XP_023005089.1 uncharacterized protein At4g13200, chloroplastic-like [Cucurbita maxima]

8.4e-59

73.02

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Query:  MSSAARPSISPSHFSVLHTNPKVTHYSSPSFAVFPSSSTQSSLKFRGISQTRPIGSPRFVARCSSGDGDSRTVLDAFFLGKALAEALTERIESTIGEVLG
        M+S   PS+SPSHFS+LH+ PK+TH SSP           S+LKFR IS   PIGSPRFV RCSSGD DSRTVL+AFFLGKALAEALTER+ESTIGEVL 
Subjt:  MSSAARPSISPSHFSVLHTNPKVTHYSSPSFAVFPSSSTQSSLKFRGISQTRPIGSPRFVARCSSGDGDSRTVLDAFFLGKALAEALTERIESTIGEVLG

Query:  GIGMLQAEQQKKIIDFQEEVIERAKKAKDKAARDAKEVPGPI--SSSIISPTAEVTSSPTTSTNRQQLSSLEPDSGTAVNQDPLLGGEE
        GIG LQAEQQK+I+DFQEEVIERAKKA++KAARDAKEV GPI  SSSI SPT EV SS TTSTN+QQLS+   DSGTA NQDP LG EE
Subjt:  GIGMLQAEQQKKIIDFQEEVIERAKKAKDKAARDAKEVPGPI--SSSIISPTAEVTSSPTTSTNRQQLSSLEPDSGTAVNQDPLLGGEE

XP_023514675.1 uncharacterized protein At4g13200, chloroplastic-like [Cucurbita pepo subsp. pepo]

3.4e-60

73.54

Show/hide

Query:  MSSAARPSISPSHFSVLHTNPKVTHYSSPSFAVFPSSSTQSSLKFRGISQTRPIGSPRFVARCSSGDGDSRTVLDAFFLGKALAEALTERIESTIGEVLG
        M+S   PS+SPSHFS+LH+ PK+TH+SSP           S+LKFR IS   PIGSPRFV RCSSGDGDSRTVL+AFFLGKALAEALTER+ESTIGEVL 
Subjt:  MSSAARPSISPSHFSVLHTNPKVTHYSSPSFAVFPSSSTQSSLKFRGISQTRPIGSPRFVARCSSGDGDSRTVLDAFFLGKALAEALTERIESTIGEVLG

Query:  GIGMLQAEQQKKIIDFQEEVIERAKKAKDKAARDAKEVPGPI--SSSIISPTAEVTSSPTTSTNRQQLSSLEPDSGTAVNQDPLLGGEE
        GIG LQAEQQK+I+DFQEEVIERAKKA++KAARDAKEV GPI  SSSI SPT EV SS T+STN+QQLS+   DSGTA NQDP LGGEE
Subjt:  GIGMLQAEQQKKIIDFQEEVIERAKKAKDKAARDAKEVPGPI--SSSIISPTAEVTSSPTTSTNRQQLSSLEPDSGTAVNQDPLLGGEE

XP_038900031.1 uncharacterized protein At4g13200, chloroplastic [Benincasa hispida]

7.8e-65

76.47

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Query:  MSSAARPSISPSHFSVLHTNPKVTHYSSPSFAVFPSSSTQSSLKFRGISQTRPIGSPRFVARCSSGDGDSRTVLDAFFLGKALAEALTERIESTIGEVLG
        MSS    S+S S FS++ T PK+THYSS S  +F SSST S+LKFR IS  +P GSPRF+ARCSSGDGDSRTVLDAFFLGKALAEALTERIEST+GEVL 
Subjt:  MSSAARPSISPSHFSVLHTNPKVTHYSSPSFAVFPSSSTQSSLKFRGISQTRPIGSPRFVARCSSGDGDSRTVLDAFFLGKALAEALTERIESTIGEVLG

Query:  GIGMLQAEQQKKIIDFQEEVIERAKKAKDKAARDAKEVPGPISSSIISPTAEVTSSPTTSTNRQQLSSLEPDSGTAVNQDPLLGGEE
        GIG LQAEQQK+I DFQEEVIERAKKAKDKAARDAKEV GP+SSSI SPT EVTSSPT STNRQQLS+ + DS T VNQDP LG +E
Subjt:  GIGMLQAEQQKKIIDFQEEVIERAKKAKDKAARDAKEVPGPISSSIISPTAEVTSSPTTSTNRQQLSSLEPDSGTAVNQDPLLGGEE

TrEMBL top hits

e value

%identity

Alignment

A0A0A0K6Q2 Uncharacterized protein

1.9e-56

70.65

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Query:  MSSAARPSISPSHFSVLHTNPKVTHYSSPSFAVFPSSSTQSSLKFRGISQTRPIGSPRFVARCSSGDGDSRTVLDAFFLGKALAEALTERIESTIGEVLG
        MSS    S+S S FS++ T PK+THYS PS  +F SSST S+LKFRGIS  +P G  RF+ARCSSGDGDSRTVLDAFFLGKALAEALTERIESTIGEVL 
Subjt:  MSSAARPSISPSHFSVLHTNPKVTHYSSPSFAVFPSSSTQSSLKFRGISQTRPIGSPRFVARCSSGDGDSRTVLDAFFLGKALAEALTERIESTIGEVLG

Query:  GIGMLQAEQQKKIIDFQEEVIERAKKAKDKAARDAKEVPGPISSSIISPTAEVTSSPTTSTNRQQLSSLEPDSGTAVNQDPLLG
        GIG LQAEQQK+I DFQ+EVIERAKKAK+KAARD+KEV GP+SSS+ISP  EV SSPT+       SS + DS + VNQDP LG
Subjt:  GIGMLQAEQQKKIIDFQEEVIERAKKAKDKAARDAKEVPGPISSSIISPTAEVTSSPTTSTNRQQLSSLEPDSGTAVNQDPLLG

A0A1S3BHX5 uncharacterized protein At4g13200, chloroplastic isoform X1

2.7e-55

70.11

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Query:  MSSAARPSISPSHFSVLHTNPKVTHYSSPSFAVFPSSSTQSSLKFRGISQTRPIGSPRFVARCSSGDGDSRTVLDAFFLGKALAEALTERIESTIGEVLG
        MSS    S+S S FS++ T PK+THYSSPS   F SSST S+L+FRGIS  +P GS R +ARCSSGDGDSRT+LDAFFLGKALAEALTERIESTIGEVL 
Subjt:  MSSAARPSISPSHFSVLHTNPKVTHYSSPSFAVFPSSSTQSSLKFRGISQTRPIGSPRFVARCSSGDGDSRTVLDAFFLGKALAEALTERIESTIGEVLG

Query:  GIGMLQAEQQKKIIDFQEEVIERAKKAKDKAARDAKEVPGPISSSIISPTAEVTSSPTTSTNRQQLSSLEPDSGTAVNQDPLLG
        GIG LQAEQQK+I DFQ+EVIERAKKAK+KAAR+AKEV  P+SSS+ISPT EV+SSPT+       SS + DS + VNQDP LG
Subjt:  GIGMLQAEQQKKIIDFQEEVIERAKKAKDKAARDAKEVPGPISSSIISPTAEVTSSPTTSTNRQQLSSLEPDSGTAVNQDPLLG

A0A6J1H854 uncharacterized protein At4g13200, chloroplastic-like

8.2e-60

72.49

Show/hide

Query:  MSSAARPSISPSHFSVLHTNPKVTHYSSPSFAVFPSSSTQSSLKFRGISQTRPIGSPRFVARCSSGDGDSRTVLDAFFLGKALAEALTERIESTIGEVLG
        M+S   PS+SPSHFS+LH+ PK+TH+SSP           S+LKFR IS   PIGSPRFV RCSSGDGDSRTVL+AFFLGKALAEALTER+ESTIGEVL 
Subjt:  MSSAARPSISPSHFSVLHTNPKVTHYSSPSFAVFPSSSTQSSLKFRGISQTRPIGSPRFVARCSSGDGDSRTVLDAFFLGKALAEALTERIESTIGEVLG

Query:  GIGMLQAEQQKKIIDFQEEVIERAKKAKDKAARDAKEVPGPI--SSSIISPTAEVTSSPTTSTNRQQLSSLEPDSGTAVNQDPLLGGEE
        GIG LQAEQQK+ +DFQEEV+ERAKKA++KAARDAKEV GPI  SSSI SPT EV SS T+STN+QQLS+   DSGTA NQDP LGGEE
Subjt:  GIGMLQAEQQKKIIDFQEEVIERAKKAKDKAARDAKEVPGPI--SSSIISPTAEVTSSPTTSTNRQQLSSLEPDSGTAVNQDPLLGGEE

A0A6J1JX27 uncharacterized protein At4g13200, chloroplastic-like

6.7e-54

69.52

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Query:  MSSAARPSISPSHFSVLHTNPKVTHYSSPSFAVFPSSSTQSSLKFRGISQTRPIGSPRFVARCSSGDGDSRTVLDAFFLGKALAEALTERIESTIGEVLG
        MSS    S+SPS FSVL T  K+TH SSPS   F SSST S+LKF      RP GS RF+A CSSGDGD+RTVLDAFFLGKA AE LTER+EST+GEVL 
Subjt:  MSSAARPSISPSHFSVLHTNPKVTHYSSPSFAVFPSSSTQSSLKFRGISQTRPIGSPRFVARCSSGDGDSRTVLDAFFLGKALAEALTERIESTIGEVLG

Query:  GIGMLQAEQQKKIIDFQEEVIERAKKAKDKAARDAKEVPGPISSSIISPTAEVTSSPTTSTNRQQLSSLEPDSGTAVNQDPLLGGEE
         IG LQAE+Q++IIDFQEEVIERAKKAK+KA RDAKE  GPISSSI+S T EVTSSPT S+N QQ SSL   S T VNQDP  G EE
Subjt:  GIGMLQAEQQKKIIDFQEEVIERAKKAKDKAARDAKEVPGPISSSIISPTAEVTSSPTTSTNRQQLSSLEPDSGTAVNQDPLLGGEE

A0A6J1KY61 uncharacterized protein At4g13200, chloroplastic-like

4.1e-59

73.02

Show/hide

Query:  MSSAARPSISPSHFSVLHTNPKVTHYSSPSFAVFPSSSTQSSLKFRGISQTRPIGSPRFVARCSSGDGDSRTVLDAFFLGKALAEALTERIESTIGEVLG
        M+S   PS+SPSHFS+LH+ PK+TH SSP           S+LKFR IS   PIGSPRFV RCSSGD DSRTVL+AFFLGKALAEALTER+ESTIGEVL 
Subjt:  MSSAARPSISPSHFSVLHTNPKVTHYSSPSFAVFPSSSTQSSLKFRGISQTRPIGSPRFVARCSSGDGDSRTVLDAFFLGKALAEALTERIESTIGEVLG

Query:  GIGMLQAEQQKKIIDFQEEVIERAKKAKDKAARDAKEVPGPI--SSSIISPTAEVTSSPTTSTNRQQLSSLEPDSGTAVNQDPLLGGEE
        GIG LQAEQQK+I+DFQEEVIERAKKA++KAARDAKEV GPI  SSSI SPT EV SS TTSTN+QQLS+   DSGTA NQDP LG EE
Subjt:  GIGMLQAEQQKKIIDFQEEVIERAKKAKDKAARDAKEVPGPI--SSSIISPTAEVTSSPTTSTNRQQLSSLEPDSGTAVNQDPLLGGEE

SwissProt top hits

e value

%identity

Alignment

P73628 Thylakoid protein sll1769

2.1e-04

Show/hide

Query:  VLDAFFLGKALAEALTERIESTIGEVLGGIGMLQAEQQKKIIDFQEEVIERAKKAKDKAARDAKEVPGPISSSIISPTAE
        VL AFFLG+A AE L+E++E  +   L  +G   AEQ++ +  F  EV  RA     +       V GP+S+  +  T +
Subjt:  VLDAFFLGKALAEALTERIESTIGEVLGGIGMLQAEQQKKIIDFQEEVIERAKKAKDKAARDAKEVPGPISSSIISPTAE

Q8LDV3 Uncharacterized protein At4g13200, chloroplastic

3.0e-19

42.29

Show/hide

Query:  MSSAARPSISPSHFSVLHTNPKVTHYSSPSFAVFPSSSTQSSLKFRGI-----SQTRPIGSPRFVARCS-----SGDGDSRTVLDAFFLGKALAEALTER
        MSS   P  SPS FS+ ++      Y+  S   F   +++S+ +F  +     S+ R   S    + CS     SG+ ++++VLDAFFLGKALAE + ER
Subjt:  MSSAARPSISPSHFSVLHTNPKVTHYSSPSFAVFPSSSTQSSLKFRGI-----SQTRPIGSPRFVARCS-----SGDGDSRTVLDAFFLGKALAEALTER

Query:  IESTIGEVLGGIGMLQAEQQKKIIDFQEEVIERAKKAKDKAARDAKEVPGPISSSII----SPTAEVTSSPTTST
        IEST+GEVL  IG  QAEQQK++ + QEEV+ERAKKAK++AAR+  E  G ++S  +    +P A V +S T+++
Subjt:  IESTIGEVLGGIGMLQAEQQKKIIDFQEEVIERAKKAKDKAARDAKEVPGPISSSII----SPTAEVTSSPTTST

Arabidopsis top hits

e value

%identity

Alignment

AT4G13200.1 unknown protein

2.1e-20

42.29

Show/hide

Query:  MSSAARPSISPSHFSVLHTNPKVTHYSSPSFAVFPSSSTQSSLKFRGI-----SQTRPIGSPRFVARCS-----SGDGDSRTVLDAFFLGKALAEALTER
        MSS   P  SPS FS+ ++      Y+  S   F   +++S+ +F  +     S+ R   S    + CS     SG+ ++++VLDAFFLGKALAE + ER
Subjt:  MSSAARPSISPSHFSVLHTNPKVTHYSSPSFAVFPSSSTQSSLKFRGI-----SQTRPIGSPRFVARCS-----SGDGDSRTVLDAFFLGKALAEALTER

Query:  IESTIGEVLGGIGMLQAEQQKKIIDFQEEVIERAKKAKDKAARDAKEVPGPISSSII----SPTAEVTSSPTTST
        IEST+GEVL  IG  QAEQQK++ + QEEV+ERAKKAK++AAR+  E  G ++S  +    +P A V +S T+++
Subjt:  IESTIGEVLGGIGMLQAEQQKKIIDFQEEVIERAKKAKDKAARDAKEVPGPISSSII----SPTAEVTSSPTTST

Sequences

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CDS sequence

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ATGAGTAGTGCGGCGAGACCTTCAATCTCCCCATCTCATTTCTCAGTTCTTCACACAAACCCGAAAGTTACCCATTATTCATCTCCATCTTTCGCTGTATTTCCC
TCATCTTCCACTCAATCGAGTCTCAAATTTCGAGGAATTTCACAAACCCGACCGATTGGGTCTCCCAGATTCGTAGCCCGTTGCAGCTCCGGTGATGGTGACAGC
AGAACTGTTCTGGATGCCTTTTTCTTAGGAAAAGCTTTGGCAGAAGCCTTAACCGAGCGTATAGAGTCAACAATCGGAGAGGTTTTGGGTGGGATTGGTATGCTG
CAAGCTGAACAACAAAAAAAAATTATTGATTTCCAGGAAGAGGTGATAGAAAGAGCCAAAAAAGCCAAGGACAAAGCAGCACGAGATGCAAAAGAAGTACCAGGA
CCCATCTCCTCTTCAATAATCTCGCCCACGGCCGAAGTTACATCATCTCCAACTACTTCGACCAATCGGCAACAACTCTCGAGTCTCGAACCGGATTCAGGAACT
GCTGTAAACCAGGATCCTCTTCTTGGTGGTGAAGAGTGA

mRNA sequence

Show/hide mRNA sequence

CCCCGCCAAAGATCTTTCTCTATATTTTCCTGTTTGGCTGTCAAGAAAATAGCAAGAAAACGCCGAGAAAATGAGTAGTGCGGCGAGACCTTCAATCTCCCCATC
TCATTTCTCAGTTCTTCACACAAACCCGAAAGTTACCCATTATTCATCTCCATCTTTCGCTGTATTTCCCTCATCTTCCACTCAATCGAGTCTCAAATTTCGAGG
AATTTCACAAACCCGACCGATTGGGTCTCCCAGATTCGTAGCCCGTTGCAGCTCCGGTGATGGTGACAGCAGAACTGTTCTGGATGCCTTTTTCTTAGGAAAAGC
TTTGGCAGAAGCCTTAACCGAGCGTATAGAGTCAACAATCGGAGAGGTTTTGGGTGGGATTGGTATGCTGCAAGCTGAACAACAAAAAAAAATTATTGATTTCCA
GGAAGAGGTGATAGAAAGAGCCAAAAAAGCCAAGGACAAAGCAGCACGAGATGCAAAAGAAGTACCAGGACCCATCTCCTCTTCAATAATCTCGCCCACGGCCGA
AGTTACATCATCTCCAACTACTTCGACCAATCGGCAACAACTCTCGAGTCTCGAACCGGATTCAGGAACTGCTGTAAACCAGGATCCTCTTCTTGGTGGTGAAGA
GTGATCATCTCTCTGTCAAATTCTTTTAGATATCTTATGAATTCCTTGTTGAAGATTGTCACATAGAACCACCCATTTAGTAAGATTATTCAAGGTTTAAAGAGT
CATCTGATTTCTTTCCTCTGAGCACGAGGAATTTAGGTCCAGTTTGATAATCATTTTATCTATGAAGTTTAAGTCTACAACTATATAATTCTATGATTTTTTTT

Protein sequence

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MSSAARPSISPSHFSVLHTNPKVTHYSSPSFAVFPSSSTQSSLKFRGISQTRPIGSPRFVARCSSGDGDSRTVLDAFFLGKALAEALTERIESTIGEVLGGIGML
QAEQQKKIIDFQEEVIERAKKAKDKAARDAKEVPGPISSSIISPTAEVTSSPTTSTNRQQLSSLEPDSGTAVNQDPLLGGEE

Sed0001531 (gene) of Chayote v1 genome