CuGenDBv2

Gene ID	Sed0001544
Organism	Sechium edule (Chayote v1)
Description	Pre-mRNA-splicing factor 18
Genome location	LG07:3165037..3169969
RNA-Seq Expression	Sed0001544
Synteny	Sed0001544
Gene Ontology terms	GO:0000350 - generation of catalytic spliceosome for second transesterification step (biological process) GO:0005682 - U5 snRNP (cellular component) GO:0046540 - U4/U6 x U5 tri-snRNP complex (cellular component) GO:0071021 - U2-type post-spliceosomal complex (cellular component)
InterPro domains	IPR004098 - Prp18 IPR014906 - Pre-mRNA processing factor 4 (PRP4)-like IPR036285 - PRP4-like superfamily IPR039979 - Pre-mRNA-splicing factor 18

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG6575910.1 Pre-mRNA-splicing factor 18, partial [Cucurbita argyrosperma subsp. sororia]

2.4e-202

91.45

Show/hide

Query:  MDLLKQELLKKREALATETGGKRFFKRSEIEKKQIQQLRDKEKRELESKALRQSTTSAATAAAISTSSKSNASASASTASSSAAVNSNATASKSLTDEQN
        MDLLKQELLKKR+ LATETGGKR FKRSEIE+KQIQQLR+KEKRELE+KALRQS+TS+  A A S SSKSN+ ASAST SSSAA+NS AT SKSLTDEQN
Subjt:  MDLLKQELLKKREALATETGGKRFFKRSEIEKKQIQQLRDKEKRELESKALRQSTTSAATAAAISTSSKSNASASASTASSSAAVNSNATASKSLTDEQN

Query:  IDNLVLPRLEVIRRLRFLKQPITLFGEDDDARLDRLKFVLKAGLFEVDSDLTEGQTNDFLRDIAELRKRQKTGMMSERKRRKKEDGAGEDGEGGGADDES
        IDNLVLPR EVIRRLRFLKQPITLFGEDDDARLDRLKFVLKAGLFEVDSDLTEGQTNDFLRDIAELRKRQKTG++SERKR+KKEDGAGE+G+GGGAD++S
Subjt:  IDNLVLPRLEVIRRLRFLKQPITLFGEDDDARLDRLKFVLKAGLFEVDSDLTEGQTNDFLRDIAELRKRQKTGMMSERKRRKKEDGAGEDGEGGGADDES

Query:  ADGGSSGVDTDKDLKRMKANFDELCEEDKILVFFKKLLNEWNQELDDMPEAEKRTAKGKSMVATFKQCARYLHPLFKFCRKKVLPDDIRQALIVVVECCM
        ADGGSSGVD DKDLKR+KANFDELCEEDKILVFFK+LLNEWNQELD+MPEAEKRTAKGKSMVATFKQCARYLHPLFKFCRKKVLPDDIRQAL+VVVECCM
Subjt:  ADGGSSGVDTDKDLKRMKANFDELCEEDKILVFFKKLLNEWNQELDDMPEAEKRTAKGKSMVATFKQCARYLHPLFKFCRKKVLPDDIRQALIVVVECCM

Query:  KRDYLAAMDQYIKMAIGNAPWPIGVTMVGIHERSAREKIYTNSVAHVMNDETTRKYLQSIKRLMTFCQRRYPTMPSKAVEFNSLANGSDLQSLLAEERES
        KRDYLAAMDQYIKMAIGNAPWPIGVTMVGIHERSAREKIYTNSVAH+MNDETTRKYLQSIKRLMTFCQRRYPTMPSKAVEFNSLANGSDLQSLLAEER S
Subjt:  KRDYLAAMDQYIKMAIGNAPWPIGVTMVGIHERSAREKIYTNSVAHVMNDETTRKYLQSIKRLMTFCQRRYPTMPSKAVEFNSLANGSDLQSLLAEERES

Query:  GGGKQGGSDERLRIMPASEDS
        GGGKQ GSDERLRIMPA EDS
Subjt:  GGGKQGGSDERLRIMPASEDS

XP_004146980.1 pre-mRNA-splicing factor 18 [Cucumis sativus]

1.8e-202

91.69

Show/hide

Query:  MDLLKQELLKKREALATETGGKRFFKRSEIEKKQIQQLRDKEKRELESKALRQSTTSAATAAAISTSSKSNASASASTASSSAAVNSNATASKSLTDEQN
        MDLLKQELLKKR+ALATETGGKR FKRSEIE++QIQQLR+KEKRELE+KALRQSTTSA  A A+STSSKSN  ASAST SSS A NS  T SKSLTDEQN
Subjt:  MDLLKQELLKKREALATETGGKRFFKRSEIEKKQIQQLRDKEKRELESKALRQSTTSAATAAAISTSSKSNASASASTASSSAAVNSNATASKSLTDEQN

Query:  IDNLVLPRLEVIRRLRFLKQPITLFGEDDDARLDRLKFVLKAGLFEVDSDLTEGQTNDFLRDIAELRKRQKTGMMSERKRRKKEDGAGEDGEGGGADDES
        IDNLVLPR EVIRRLRFLKQPITLFGEDDDARLDRLKFVLKAGLFEVDSDLTEGQTNDFLRDIAELRKRQKTG++SERKR+KKEDGAGE+G+GGGAD+ES
Subjt:  IDNLVLPRLEVIRRLRFLKQPITLFGEDDDARLDRLKFVLKAGLFEVDSDLTEGQTNDFLRDIAELRKRQKTGMMSERKRRKKEDGAGEDGEGGGADDES

Query:  ADGGSSGVDTDKDLKRMKANFDELCEEDKILVFFKKLLNEWNQELDDMPEAEKRTAKGKSMVATFKQCARYLHPLFKFCRKKVLPDDIRQALIVVVECCM
        ADGGSSGV+TDKDLKRMKANFDELCEEDKILVFFK+LLNEW QELD+MPEAEKRTAKGKSMVATFKQCARYLHPLFKFCRKKVLPDDIRQAL+VVVECCM
Subjt:  ADGGSSGVDTDKDLKRMKANFDELCEEDKILVFFKKLLNEWNQELDDMPEAEKRTAKGKSMVATFKQCARYLHPLFKFCRKKVLPDDIRQALIVVVECCM

Query:  KRDYLAAMDQYIKMAIGNAPWPIGVTMVGIHERSAREKIYTNSVAHVMNDETTRKYLQSIKRLMTFCQRRYPTMPSKAVEFNSLANGSDLQSLLAEERES
        KRDYLAAMDQYIKMAIGNAPWPIGVTMVGIHERSAREKIYTNSVAH+MNDETTRKYLQSIKRLMTFCQRRYPTMPSKAVEFNSLANGSDLQSLLAEER S
Subjt:  KRDYLAAMDQYIKMAIGNAPWPIGVTMVGIHERSAREKIYTNSVAHVMNDETTRKYLQSIKRLMTFCQRRYPTMPSKAVEFNSLANGSDLQSLLAEERES

Query:  GGGKQGGSDERLRIMPASEDS
        GGGK  GSDERLRIMPA EDS
Subjt:  GGGKQGGSDERLRIMPASEDS

XP_022960193.1 pre-mRNA-splicing factor 18-like [Cucurbita moschata]

2.4e-202

91.49

Show/hide

Query:  MDLLKQELLKKREALATETGGKRFFKRSEIEKKQIQQLRDKEKRELESKALRQSTTSAATAAAISTSSKSNASASASTASSSAAVNSNATASKSLTDEQN
        MDLLKQELLKKR+ALATETGGKRFFKRSEIE+KQIQQLR+KEKRELE+KALRQSTTSAATA A STSSKSN+ ASAST +SS  +NS AT SKSLTDEQN
Subjt:  MDLLKQELLKKREALATETGGKRFFKRSEIEKKQIQQLRDKEKRELESKALRQSTTSAATAAAISTSSKSNASASASTASSSAAVNSNATASKSLTDEQN

Query:  IDNLVLPRLEVIRRLRFLKQPITLFGEDDDARLDRLKFVLKAGLFEVDSDLTEGQTNDFLRDIAELRKRQKTGMMSERKRRKKEDGAGEDGEGGGADDES
        IDNLVLPR EVIRRLRFLKQPITLFGEDDD RLDRLK+VLKAGLFEVDSDLTEGQTNDFLRDIAELRKRQKTG++SERKR+KKEDGAGE+GEGGGAD+ES
Subjt:  IDNLVLPRLEVIRRLRFLKQPITLFGEDDDARLDRLKFVLKAGLFEVDSDLTEGQTNDFLRDIAELRKRQKTGMMSERKRRKKEDGAGEDGEGGGADDES

Query:  ADGGSSGVDTDKDLKRMKANFDELCEEDKILVFFKKLLNEWNQELDDMPEAEKRTAKGKSMVATFKQCARYLHPLFKFCRKKVLPDDIRQALIVVVECCM
        ADGGSSGVDTDKDLKRMKANFDELC+EDKILVFFK+LLNEWNQELD+MPEAEKRTAKGKSMVATFKQCARYLHPLFKFCRKK+LPDDIRQAL+VVVECCM
Subjt:  ADGGSSGVDTDKDLKRMKANFDELCEEDKILVFFKKLLNEWNQELDDMPEAEKRTAKGKSMVATFKQCARYLHPLFKFCRKKVLPDDIRQALIVVVECCM

Query:  KRDYLAAMDQYIKMAIGNAPWPIGVTMVGIHERSAREKIYTNSVAHVMNDETTRKYLQSIKRLMTFCQRRYPTMPSKAVEFNSLANGSDLQSLLAEERES
        KRDYLAAMDQYIKMAIGNAPWPIGVTMVGIHERSAREKIYTNSVAH+MNDETTRKYLQSIKRLMTFCQRRYPTMPSKAVEFNSLANGSDLQSLLAEER S
Subjt:  KRDYLAAMDQYIKMAIGNAPWPIGVTMVGIHERSAREKIYTNSVAHVMNDETTRKYLQSIKRLMTFCQRRYPTMPSKAVEFNSLANGSDLQSLLAEERES

Query:  GGGKQG--GSDERLRIMPASEDS
        GGG  G  GSDERLRIMP+ EDS
Subjt:  GGGKQG--GSDERLRIMPASEDS

XP_023549183.1 pre-mRNA-splicing factor 18-like [Cucurbita pepo subsp. pepo]

1.4e-202

91.45

Show/hide

Query:  MDLLKQELLKKREALATETGGKRFFKRSEIEKKQIQQLRDKEKRELESKALRQSTTSAATAAAISTSSKSNASASASTASSSAAVNSNATASKSLTDEQN
        MDLLKQELLKKR+ALATETGGKR FKRSEIE+KQIQQLR+KEKRELE+KALRQS+T++  A A S SSKSN+ ASAST SSSAA+NS AT SKSLTDEQN
Subjt:  MDLLKQELLKKREALATETGGKRFFKRSEIEKKQIQQLRDKEKRELESKALRQSTTSAATAAAISTSSKSNASASASTASSSAAVNSNATASKSLTDEQN

Query:  IDNLVLPRLEVIRRLRFLKQPITLFGEDDDARLDRLKFVLKAGLFEVDSDLTEGQTNDFLRDIAELRKRQKTGMMSERKRRKKEDGAGEDGEGGGADDES
        IDNLVLPR EVIRRLRFLKQPITLFGEDDDARLDRLKFVLKAGLFEVDSDLTEGQTNDFLRDIAELRKRQKTG++SERKR+KKEDGAGE+G+GGGAD++S
Subjt:  IDNLVLPRLEVIRRLRFLKQPITLFGEDDDARLDRLKFVLKAGLFEVDSDLTEGQTNDFLRDIAELRKRQKTGMMSERKRRKKEDGAGEDGEGGGADDES

Query:  ADGGSSGVDTDKDLKRMKANFDELCEEDKILVFFKKLLNEWNQELDDMPEAEKRTAKGKSMVATFKQCARYLHPLFKFCRKKVLPDDIRQALIVVVECCM
        ADGGSSGVD DKDLKR+KANFDELCEEDKILVFFK+LLNEWNQELD+MPEAEKRTAKGKSMVATFKQCARYLHPLFKFCRKKVLPDDIRQAL+VVVECCM
Subjt:  ADGGSSGVDTDKDLKRMKANFDELCEEDKILVFFKKLLNEWNQELDDMPEAEKRTAKGKSMVATFKQCARYLHPLFKFCRKKVLPDDIRQALIVVVECCM

Query:  KRDYLAAMDQYIKMAIGNAPWPIGVTMVGIHERSAREKIYTNSVAHVMNDETTRKYLQSIKRLMTFCQRRYPTMPSKAVEFNSLANGSDLQSLLAEERES
        KRDYLAAMDQYIKMAIGNAPWPIGVTMVGIHERSAREKIYTNSVAH+MNDETTRKYLQSIKRLMTFCQRRYPTMPSKAVEFNSLANGSDLQSLLAEER S
Subjt:  KRDYLAAMDQYIKMAIGNAPWPIGVTMVGIHERSAREKIYTNSVAHVMNDETTRKYLQSIKRLMTFCQRRYPTMPSKAVEFNSLANGSDLQSLLAEERES

Query:  GGGKQGGSDERLRIMPASEDS
        GGGKQ GSDERLRIMPA EDS
Subjt:  GGGKQGGSDERLRIMPASEDS

XP_038897671.1 pre-mRNA-splicing factor 18 [Benincasa hispida]

9.6e-204

92.16

Show/hide

Query:  MDLLKQELLKKREALATETGGKRFFKRSEIEKKQIQQLRDKEKRELESKALRQSTTSAATAAAISTSSKSNASASASTASSSAAVNSNATASKSLTDEQN
        MDLLKQELLKKR+ALATETGGKR FKRSEIE+KQIQQLR+KEKRELE+KALRQSTTSAA A A STSSKSN  ASAST SSS A+NS AT SKSLTDEQN
Subjt:  MDLLKQELLKKREALATETGGKRFFKRSEIEKKQIQQLRDKEKRELESKALRQSTTSAATAAAISTSSKSNASASASTASSSAAVNSNATASKSLTDEQN

Query:  IDNLVLPRLEVIRRLRFLKQPITLFGEDDDARLDRLKFVLKAGLFEVDSDLTEGQTNDFLRDIAELRKRQKTGMMSERKRRKKEDGAGEDGEGGGADDES
        IDNLVLPR EVIRRLRFLKQPIT+FGEDDDARLDRLKFVLKAGLFEVDSDLTEGQTNDFLRDIAELRKRQKTG++SERKR+KKEDGAGE+G+GGGAD+ES
Subjt:  IDNLVLPRLEVIRRLRFLKQPITLFGEDDDARLDRLKFVLKAGLFEVDSDLTEGQTNDFLRDIAELRKRQKTGMMSERKRRKKEDGAGEDGEGGGADDES

Query:  ADGGSSGVDTDKDLKRMKANFDELCEEDKILVFFKKLLNEWNQELDDMPEAEKRTAKGKSMVATFKQCARYLHPLFKFCRKKVLPDDIRQALIVVVECCM
        ADGGSSGVD DKDL RMKANFDELCEEDKILVFFK+LLNEWNQELD+MPEAEKRTAKGKSMVATFKQCARYLHPLFKFCRKKVLPDDIRQAL+VVVECCM
Subjt:  ADGGSSGVDTDKDLKRMKANFDELCEEDKILVFFKKLLNEWNQELDDMPEAEKRTAKGKSMVATFKQCARYLHPLFKFCRKKVLPDDIRQALIVVVECCM

Query:  KRDYLAAMDQYIKMAIGNAPWPIGVTMVGIHERSAREKIYTNSVAHVMNDETTRKYLQSIKRLMTFCQRRYPTMPSKAVEFNSLANGSDLQSLLAEERES
        KRDYLAAMDQYIKMAIGNAPWPIGVTMVGIHERSAREKIYTNSVAH+MNDETTRKYLQSIKRLMTFCQRRYPTMPSKAVEFNSLANGSDLQSLLAEER S
Subjt:  KRDYLAAMDQYIKMAIGNAPWPIGVTMVGIHERSAREKIYTNSVAHVMNDETTRKYLQSIKRLMTFCQRRYPTMPSKAVEFNSLANGSDLQSLLAEERES

Query:  GGGKQGGSDERLRIMPASEDS
        GGGK  GSDERLRIMPAS+DS
Subjt:  GGGKQGGSDERLRIMPASEDS

TrEMBL top hits

e value

%identity

Alignment

A0A0A0K7C9 Pre-mRNA-splicing factor 18

8.7e-203

91.69

Show/hide

Query:  MDLLKQELLKKREALATETGGKRFFKRSEIEKKQIQQLRDKEKRELESKALRQSTTSAATAAAISTSSKSNASASASTASSSAAVNSNATASKSLTDEQN
        MDLLKQELLKKR+ALATETGGKR FKRSEIE++QIQQLR+KEKRELE+KALRQSTTSA  A A+STSSKSN  ASAST SSS A NS  T SKSLTDEQN
Subjt:  MDLLKQELLKKREALATETGGKRFFKRSEIEKKQIQQLRDKEKRELESKALRQSTTSAATAAAISTSSKSNASASASTASSSAAVNSNATASKSLTDEQN

Query:  IDNLVLPRLEVIRRLRFLKQPITLFGEDDDARLDRLKFVLKAGLFEVDSDLTEGQTNDFLRDIAELRKRQKTGMMSERKRRKKEDGAGEDGEGGGADDES
        IDNLVLPR EVIRRLRFLKQPITLFGEDDDARLDRLKFVLKAGLFEVDSDLTEGQTNDFLRDIAELRKRQKTG++SERKR+KKEDGAGE+G+GGGAD+ES
Subjt:  IDNLVLPRLEVIRRLRFLKQPITLFGEDDDARLDRLKFVLKAGLFEVDSDLTEGQTNDFLRDIAELRKRQKTGMMSERKRRKKEDGAGEDGEGGGADDES

Query:  ADGGSSGVDTDKDLKRMKANFDELCEEDKILVFFKKLLNEWNQELDDMPEAEKRTAKGKSMVATFKQCARYLHPLFKFCRKKVLPDDIRQALIVVVECCM
        ADGGSSGV+TDKDLKRMKANFDELCEEDKILVFFK+LLNEW QELD+MPEAEKRTAKGKSMVATFKQCARYLHPLFKFCRKKVLPDDIRQAL+VVVECCM
Subjt:  ADGGSSGVDTDKDLKRMKANFDELCEEDKILVFFKKLLNEWNQELDDMPEAEKRTAKGKSMVATFKQCARYLHPLFKFCRKKVLPDDIRQALIVVVECCM

Query:  KRDYLAAMDQYIKMAIGNAPWPIGVTMVGIHERSAREKIYTNSVAHVMNDETTRKYLQSIKRLMTFCQRRYPTMPSKAVEFNSLANGSDLQSLLAEERES
        KRDYLAAMDQYIKMAIGNAPWPIGVTMVGIHERSAREKIYTNSVAH+MNDETTRKYLQSIKRLMTFCQRRYPTMPSKAVEFNSLANGSDLQSLLAEER S
Subjt:  KRDYLAAMDQYIKMAIGNAPWPIGVTMVGIHERSAREKIYTNSVAHVMNDETTRKYLQSIKRLMTFCQRRYPTMPSKAVEFNSLANGSDLQSLLAEERES

Query:  GGGKQGGSDERLRIMPASEDS
        GGGK  GSDERLRIMPA EDS
Subjt:  GGGKQGGSDERLRIMPASEDS

A0A1S3BS26 Pre-mRNA-splicing factor 18

5.7e-202

91.45

Show/hide

Query:  MDLLKQELLKKREALATETGGKRFFKRSEIEKKQIQQLRDKEKRELESKALRQSTTSAATAAAISTSSKSNASASASTASSSAAVNSNATASKSLTDEQN
        MDLLKQELLKKR+ALATETGGKR FKRSEIE+KQIQQLR+KEKRELE+KALRQST SA  A A STSSKSN  ASAST SSS A++S  T SKSLTDEQN
Subjt:  MDLLKQELLKKREALATETGGKRFFKRSEIEKKQIQQLRDKEKRELESKALRQSTTSAATAAAISTSSKSNASASASTASSSAAVNSNATASKSLTDEQN

Query:  IDNLVLPRLEVIRRLRFLKQPITLFGEDDDARLDRLKFVLKAGLFEVDSDLTEGQTNDFLRDIAELRKRQKTGMMSERKRRKKEDGAGEDGEGGGADDES
        IDNLVLPR EVIRRLRFLKQPITLFGEDDDARLDRLKFVLKAGLFEVDSDLTEGQTNDFLRDIAELRKRQKTG++SERKR+KKEDGAGE+G+GGG D+ES
Subjt:  IDNLVLPRLEVIRRLRFLKQPITLFGEDDDARLDRLKFVLKAGLFEVDSDLTEGQTNDFLRDIAELRKRQKTGMMSERKRRKKEDGAGEDGEGGGADDES

Query:  ADGGSSGVDTDKDLKRMKANFDELCEEDKILVFFKKLLNEWNQELDDMPEAEKRTAKGKSMVATFKQCARYLHPLFKFCRKKVLPDDIRQALIVVVECCM
        ADGGSSGV+TDKDLKRMKANFDELCEEDKILVFFK+LLNEWNQELD+MPEAEKRTAKGKSMVATFKQCARYLHPLFKFCRKKVLPDDIRQAL+VVVECCM
Subjt:  ADGGSSGVDTDKDLKRMKANFDELCEEDKILVFFKKLLNEWNQELDDMPEAEKRTAKGKSMVATFKQCARYLHPLFKFCRKKVLPDDIRQALIVVVECCM

Query:  KRDYLAAMDQYIKMAIGNAPWPIGVTMVGIHERSAREKIYTNSVAHVMNDETTRKYLQSIKRLMTFCQRRYPTMPSKAVEFNSLANGSDLQSLLAEERES
        KRDYLAAMDQYIKMAIGNAPWPIGVTMVGIHERSAREKIYTNSVAH+MNDETTRKYLQSIKRLMTFCQRRYPTMPSKAVEFNSLANGSDLQSLLAEER S
Subjt:  KRDYLAAMDQYIKMAIGNAPWPIGVTMVGIHERSAREKIYTNSVAHVMNDETTRKYLQSIKRLMTFCQRRYPTMPSKAVEFNSLANGSDLQSLLAEERES

Query:  GGGKQGGSDERLRIMPASEDS
        GGGK  GSDERLRIMPA EDS
Subjt:  GGGKQGGSDERLRIMPASEDS

A0A5D3DRE9 Pre-mRNA-splicing factor 18

1.5e-202

91.69

Show/hide

Query:  MDLLKQELLKKREALATETGGKRFFKRSEIEKKQIQQLRDKEKRELESKALRQSTTSAATAAAISTSSKSNASASASTASSSAAVNSNATASKSLTDEQN
        MDLLKQELLKKR+ALATETGGKR FKRSEIE+KQIQQLR+KEKRELE+KALRQST SA  A A STSSKSN  ASAST SSS A++S  T SKSLTDEQN
Subjt:  MDLLKQELLKKREALATETGGKRFFKRSEIEKKQIQQLRDKEKRELESKALRQSTTSAATAAAISTSSKSNASASASTASSSAAVNSNATASKSLTDEQN

Query:  IDNLVLPRLEVIRRLRFLKQPITLFGEDDDARLDRLKFVLKAGLFEVDSDLTEGQTNDFLRDIAELRKRQKTGMMSERKRRKKEDGAGEDGEGGGADDES
        IDNLVLPR EVIRRLRFLKQPITLFGEDDDARLDRLKFVLKAGLFEVDSDLTEGQTNDFLRDIAELRKRQKTG++SERKR+KKEDGAGE+G+GGGAD+ES
Subjt:  IDNLVLPRLEVIRRLRFLKQPITLFGEDDDARLDRLKFVLKAGLFEVDSDLTEGQTNDFLRDIAELRKRQKTGMMSERKRRKKEDGAGEDGEGGGADDES

Query:  ADGGSSGVDTDKDLKRMKANFDELCEEDKILVFFKKLLNEWNQELDDMPEAEKRTAKGKSMVATFKQCARYLHPLFKFCRKKVLPDDIRQALIVVVECCM
        ADGGSSGV+TDKDLKRMKANFDELCEEDKILVFFK+LLNEWNQELD+MPEAEKRTAKGKSMVATFKQCARYLHPLFKFCRKKVLPDDIRQAL+VVVECCM
Subjt:  ADGGSSGVDTDKDLKRMKANFDELCEEDKILVFFKKLLNEWNQELDDMPEAEKRTAKGKSMVATFKQCARYLHPLFKFCRKKVLPDDIRQALIVVVECCM

Query:  KRDYLAAMDQYIKMAIGNAPWPIGVTMVGIHERSAREKIYTNSVAHVMNDETTRKYLQSIKRLMTFCQRRYPTMPSKAVEFNSLANGSDLQSLLAEERES
        KRDYLAAMDQYIKMAIGNAPWPIGVTMVGIHERSAREKIYTNSVAH+MNDETTRKYLQSIKRLMTFCQRRYPTMPSKAVEFNSLANGSDLQSLLAEER S
Subjt:  KRDYLAAMDQYIKMAIGNAPWPIGVTMVGIHERSAREKIYTNSVAHVMNDETTRKYLQSIKRLMTFCQRRYPTMPSKAVEFNSLANGSDLQSLLAEERES

Query:  GGGKQGGSDERLRIMPASEDS
        GGGK  GSDERLRIMPA EDS
Subjt:  GGGKQGGSDERLRIMPASEDS

A0A6J1GQ96 Pre-mRNA-splicing factor 18

2.5e-202

91.45

Show/hide

Query:  MDLLKQELLKKREALATETGGKRFFKRSEIEKKQIQQLRDKEKRELESKALRQSTTSAATAAAISTSSKSNASASASTASSSAAVNSNATASKSLTDEQN
        MDLLKQELLKKR+ALATETGGKR FKRSEIE+KQIQQLR+KEKRELE+KALRQS+TS+  A A S SSKSN+ ASAST SSSAA+NS AT SKSLTDEQN
Subjt:  MDLLKQELLKKREALATETGGKRFFKRSEIEKKQIQQLRDKEKRELESKALRQSTTSAATAAAISTSSKSNASASASTASSSAAVNSNATASKSLTDEQN

Query:  IDNLVLPRLEVIRRLRFLKQPITLFGEDDDARLDRLKFVLKAGLFEVDSDLTEGQTNDFLRDIAELRKRQKTGMMSERKRRKKEDGAGEDGEGGGADDES
        IDNLVL R EVIRRLRFLKQPITLFGEDDDARLDRLKFVLKAGLFEVDSDLTEGQTNDFLRDIAELRKRQKTG++SERKR+KKEDGAGE+G+GGGAD++S
Subjt:  IDNLVLPRLEVIRRLRFLKQPITLFGEDDDARLDRLKFVLKAGLFEVDSDLTEGQTNDFLRDIAELRKRQKTGMMSERKRRKKEDGAGEDGEGGGADDES

Query:  ADGGSSGVDTDKDLKRMKANFDELCEEDKILVFFKKLLNEWNQELDDMPEAEKRTAKGKSMVATFKQCARYLHPLFKFCRKKVLPDDIRQALIVVVECCM
        ADGGSSGVD DKDLKR+KANFDELCEEDKILVFFK+LLNEWNQELD+MPEAEKRTAKGKSMVATFKQCARYLHPLFKFCRKKVLPDDIRQAL+VVVECCM
Subjt:  ADGGSSGVDTDKDLKRMKANFDELCEEDKILVFFKKLLNEWNQELDDMPEAEKRTAKGKSMVATFKQCARYLHPLFKFCRKKVLPDDIRQALIVVVECCM

Query:  KRDYLAAMDQYIKMAIGNAPWPIGVTMVGIHERSAREKIYTNSVAHVMNDETTRKYLQSIKRLMTFCQRRYPTMPSKAVEFNSLANGSDLQSLLAEERES
        KRDYLAAMDQYIKMAIGNAPWPIGVTMVGIHERSAREKIYTNSVAH+MNDETTRKYLQSIKRLMTFCQRRYPTMPSKAVEFNSLANGSDLQSLLAEER S
Subjt:  KRDYLAAMDQYIKMAIGNAPWPIGVTMVGIHERSAREKIYTNSVAHVMNDETTRKYLQSIKRLMTFCQRRYPTMPSKAVEFNSLANGSDLQSLLAEERES

Query:  GGGKQGGSDERLRIMPASEDS
        GGGKQ GSDERLRIMPA EDS
Subjt:  GGGKQGGSDERLRIMPASEDS

A0A6J1H850 Pre-mRNA-splicing factor 18

1.1e-202

91.49

Show/hide

Query:  MDLLKQELLKKREALATETGGKRFFKRSEIEKKQIQQLRDKEKRELESKALRQSTTSAATAAAISTSSKSNASASASTASSSAAVNSNATASKSLTDEQN
        MDLLKQELLKKR+ALATETGGKRFFKRSEIE+KQIQQLR+KEKRELE+KALRQSTTSAATA A STSSKSN+ ASAST +SS  +NS AT SKSLTDEQN
Subjt:  MDLLKQELLKKREALATETGGKRFFKRSEIEKKQIQQLRDKEKRELESKALRQSTTSAATAAAISTSSKSNASASASTASSSAAVNSNATASKSLTDEQN

Query:  IDNLVLPRLEVIRRLRFLKQPITLFGEDDDARLDRLKFVLKAGLFEVDSDLTEGQTNDFLRDIAELRKRQKTGMMSERKRRKKEDGAGEDGEGGGADDES
        IDNLVLPR EVIRRLRFLKQPITLFGEDDD RLDRLK+VLKAGLFEVDSDLTEGQTNDFLRDIAELRKRQKTG++SERKR+KKEDGAGE+GEGGGAD+ES
Subjt:  IDNLVLPRLEVIRRLRFLKQPITLFGEDDDARLDRLKFVLKAGLFEVDSDLTEGQTNDFLRDIAELRKRQKTGMMSERKRRKKEDGAGEDGEGGGADDES

Query:  ADGGSSGVDTDKDLKRMKANFDELCEEDKILVFFKKLLNEWNQELDDMPEAEKRTAKGKSMVATFKQCARYLHPLFKFCRKKVLPDDIRQALIVVVECCM
        ADGGSSGVDTDKDLKRMKANFDELC+EDKILVFFK+LLNEWNQELD+MPEAEKRTAKGKSMVATFKQCARYLHPLFKFCRKK+LPDDIRQAL+VVVECCM
Subjt:  ADGGSSGVDTDKDLKRMKANFDELCEEDKILVFFKKLLNEWNQELDDMPEAEKRTAKGKSMVATFKQCARYLHPLFKFCRKKVLPDDIRQALIVVVECCM

Query:  KRDYLAAMDQYIKMAIGNAPWPIGVTMVGIHERSAREKIYTNSVAHVMNDETTRKYLQSIKRLMTFCQRRYPTMPSKAVEFNSLANGSDLQSLLAEERES
        KRDYLAAMDQYIKMAIGNAPWPIGVTMVGIHERSAREKIYTNSVAH+MNDETTRKYLQSIKRLMTFCQRRYPTMPSKAVEFNSLANGSDLQSLLAEER S
Subjt:  KRDYLAAMDQYIKMAIGNAPWPIGVTMVGIHERSAREKIYTNSVAHVMNDETTRKYLQSIKRLMTFCQRRYPTMPSKAVEFNSLANGSDLQSLLAEERES

Query:  GGGKQG--GSDERLRIMPASEDS
        GGG  G  GSDERLRIMP+ EDS
Subjt:  GGGKQG--GSDERLRIMPASEDS

SwissProt top hits

e value

%identity

Alignment

Q2HJ41 Pre-mRNA-splicing factor 18

8.5e-46

34.63

Show/hide

Query:  MDLLKQELLKKREALATE---TGGKRFFKRSEIEKKQIQQLRDKEKRELESKALRQSTTSAATAAAISTSSKSNASASASTASSSAAVNSNATASKSLTD
        MD+LK E+L+KR+ +         K++FKRSE+ KK+ +   ++   +++ K   Q   +                            +SN      L +
Subjt:  MDLLKQELLKKREALATE---TGGKRFFKRSEIEKKQIQQLRDKEKRELESKALRQSTTSAATAAAISTSSKSNASASASTASSSAAVNSNATASKSLTD

Query:  EQNIDNLVLPRLEVIRRLRFLKQPITLFGEDDDARLDRLKFVLKAGLFEVDSDLTEGQTNDFLRDIAELRKRQKTGMMSERKRRKKEDGAGEDGEGGGAD
        E+    + L R EVIRRLR   +PI LFGE D     RL+      +  +  ++ +G  ND    + ++ ++    ++          G  E GE    +
Subjt:  EQNIDNLVLPRLEVIRRLRFLKQPITLFGEDDDARLDRLKFVLKAGLFEVDSDLTEGQTNDFLRDIAELRKRQKTGMMSERKRRKKEDGAGEDGEGGGAD

Query:  DESADGGSSGVDTDKDLKRMKANFDELCEEDKILVFFKKLLNEWNQELDDMPEAEKRTAKGKSMVATFKQCARYLHPLFKFCRKKVLPDDIRQALIVVVE
        D      ++ ++  + L       D+  + D I  F K LL  W +EL+   +  KR+ +GK   AT KQ   YL PLF+  RK+ LP DI++++  +++
Subjt:  DESADGGSSGVDTDKDLKRMKANFDELCEEDKILVFFKKLLNEWNQELDDMPEAEKRTAKGKSMVATFKQCARYLHPLFKFCRKKVLPDDIRQALIVVVE

Query:  CCMKRDYLAAMDQYIKMAIGNAPWPIGVTMVGIHERSAREKIYTNSVAHVMNDETTRKYLQSIKRLMTFCQRRYPTMPSKAVEFNSL
          ++R+Y+ A D Y++MAIGNAPWPIGVTMVGIH R+ REKI++  VAHV+NDET RKY+Q +KRLMT CQ+ +PT PSK VE+N+L
Subjt:  CCMKRDYLAAMDQYIKMAIGNAPWPIGVTMVGIHERSAREKIYTNSVAHVMNDETTRKYLQSIKRLMTFCQRRYPTMPSKAVEFNSL

Q5RE03 Pre-mRNA-splicing factor 18

8.5e-46

34.63

Show/hide

Query:  MDLLKQELLKKREALATE---TGGKRFFKRSEIEKKQIQQLRDKEKRELESKALRQSTTSAATAAAISTSSKSNASASASTASSSAAVNSNATASKSLTD
        MD+LK E+L+KR+ +         K++FKRSE+ KK+ +   ++    ++ K   Q   +                            +SN      L +
Subjt:  MDLLKQELLKKREALATE---TGGKRFFKRSEIEKKQIQQLRDKEKRELESKALRQSTTSAATAAAISTSSKSNASASASTASSSAAVNSNATASKSLTD

Query:  EQNIDNLVLPRLEVIRRLRFLKQPITLFGEDDDARLDRLKFVLKAGLFEVDSDLTEGQTNDFLRDIAELRKRQKTGMMSERKRRKKEDGAGEDGEGGGAD
        E+    + L R EVIRRLR   +PI LFGE D     RL+      +  +  ++ +G  ND    + ++ ++    ++          G  E GE    +
Subjt:  EQNIDNLVLPRLEVIRRLRFLKQPITLFGEDDDARLDRLKFVLKAGLFEVDSDLTEGQTNDFLRDIAELRKRQKTGMMSERKRRKKEDGAGEDGEGGGAD

Query:  DESADGGSSGVDTDKDLKRMKANFDELCEEDKILVFFKKLLNEWNQELDDMPEAEKRTAKGKSMVATFKQCARYLHPLFKFCRKKVLPDDIRQALIVVVE
        D      ++ ++  + L       D+  + D I  F K LL  W +EL+   +  KR+ +GK   AT KQ   YL PLF+  RK+ LP DI++++  +++
Subjt:  DESADGGSSGVDTDKDLKRMKANFDELCEEDKILVFFKKLLNEWNQELDDMPEAEKRTAKGKSMVATFKQCARYLHPLFKFCRKKVLPDDIRQALIVVVE

Query:  CCMKRDYLAAMDQYIKMAIGNAPWPIGVTMVGIHERSAREKIYTNSVAHVMNDETTRKYLQSIKRLMTFCQRRYPTMPSKAVEFNSL
          ++R+Y+ A D Y++MAIGNAPWPIGVTMVGIH R+ REKI++  VAHV+NDET RKY+Q +KRLMT CQ+ +PT PSK VE+N+L
Subjt:  CCMKRDYLAAMDQYIKMAIGNAPWPIGVTMVGIHERSAREKIYTNSVAHVMNDETTRKYLQSIKRLMTFCQRRYPTMPSKAVEFNSL

Q8BM39 Pre-mRNA-splicing factor 18

1.5e-45

34.37

Show/hide

Query:  MDLLKQELLKKREALATE---TGGKRFFKRSEIEKKQIQQLRDKEKRELESKALRQSTTSAATAAAISTSSKSNASASASTASSSAAVNSNATASKSLTD
        MD+LK E+L+KR+ +         K++FKRSE+ +K+ +   ++   +++ K   Q   +                            +SN      L +
Subjt:  MDLLKQELLKKREALATE---TGGKRFFKRSEIEKKQIQQLRDKEKRELESKALRQSTTSAATAAAISTSSKSNASASASTASSSAAVNSNATASKSLTD

Query:  EQNIDNLVLPRLEVIRRLRFLKQPITLFGEDDDARLDRLKFVLKAGLFEVDSDLTEGQTNDFLRDIAELRKRQKTGMMSERKRRKKEDGAGEDGEGGGAD
        E+    + L R EVIRRLR   +PI LFGE D     RL+      +  +  ++ +G  ND    + ++ ++    ++          G  E GE    +
Subjt:  EQNIDNLVLPRLEVIRRLRFLKQPITLFGEDDDARLDRLKFVLKAGLFEVDSDLTEGQTNDFLRDIAELRKRQKTGMMSERKRRKKEDGAGEDGEGGGAD

Query:  DESADGGSSGVDTDKDLKRMKANFDELCEEDKILVFFKKLLNEWNQELDDMPEAEKRTAKGKSMVATFKQCARYLHPLFKFCRKKVLPDDIRQALIVVVE
        D      ++ ++  + L       D+  + D I  F K LL  W +EL+   +  KR+ +GK   AT KQ   YL PLF+  RK+ LP DI++++  +++
Subjt:  DESADGGSSGVDTDKDLKRMKANFDELCEEDKILVFFKKLLNEWNQELDDMPEAEKRTAKGKSMVATFKQCARYLHPLFKFCRKKVLPDDIRQALIVVVE

Query:  CCMKRDYLAAMDQYIKMAIGNAPWPIGVTMVGIHERSAREKIYTNSVAHVMNDETTRKYLQSIKRLMTFCQRRYPTMPSKAVEFNSL
          ++R+Y+ A D Y++MAIGNAPWPIGVTMVGIH R+ REKI++  VAHV+NDET RKY+Q +KRLMT CQ+ +PT PSK VE+N+L
Subjt:  CCMKRDYLAAMDQYIKMAIGNAPWPIGVTMVGIHERSAREKIYTNSVAHVMNDETTRKYLQSIKRLMTFCQRRYPTMPSKAVEFNSL

Q99633 Pre-mRNA-splicing factor 18

6.5e-46

34.63

Show/hide

Query:  MDLLKQELLKKREALATE---TGGKRFFKRSEIEKKQIQQLRDKEKRELESKALRQSTTSAATAAAISTSSKSNASASASTASSSAAVNSNATASKSLTD
        MD+LK E+L+KR+ +         K++FKRSE+ KK+ +   ++   +++ K   Q   +                            +SN      L +
Subjt:  MDLLKQELLKKREALATE---TGGKRFFKRSEIEKKQIQQLRDKEKRELESKALRQSTTSAATAAAISTSSKSNASASASTASSSAAVNSNATASKSLTD

Query:  EQNIDNLVLPRLEVIRRLRFLKQPITLFGEDDDARLDRLKFVLKAGLFEVDSDLTEGQTNDFLRDIAELRKRQKTGMMSERKRRKKEDGAGEDGEGGGAD
        E+    + L R EVIRRLR   +PI LFGE D     RL+      +  +  ++ +G  ND    + ++ ++    ++          G  E GE    +
Subjt:  EQNIDNLVLPRLEVIRRLRFLKQPITLFGEDDDARLDRLKFVLKAGLFEVDSDLTEGQTNDFLRDIAELRKRQKTGMMSERKRRKKEDGAGEDGEGGGAD

Query:  DESADGGSSGVDTDKDLKRMKANFDELCEEDKILVFFKKLLNEWNQELDDMPEAEKRTAKGKSMVATFKQCARYLHPLFKFCRKKVLPDDIRQALIVVVE
        D      ++ ++  + L       D+  + D I  F K LL  W +EL+   +  KR+ +GK   AT KQ   YL PLF+  RK+ LP DI++++  +++
Subjt:  DESADGGSSGVDTDKDLKRMKANFDELCEEDKILVFFKKLLNEWNQELDDMPEAEKRTAKGKSMVATFKQCARYLHPLFKFCRKKVLPDDIRQALIVVVE

Query:  CCMKRDYLAAMDQYIKMAIGNAPWPIGVTMVGIHERSAREKIYTNSVAHVMNDETTRKYLQSIKRLMTFCQRRYPTMPSKAVEFNSL
          ++R+Y+ A D Y++MAIGNAPWPIGVTMVGIH R+ REKI++  VAHV+NDET RKY+Q +KRLMT CQ+ +PT PSK VE+N+L
Subjt:  CCMKRDYLAAMDQYIKMAIGNAPWPIGVTMVGIHERSAREKIYTNSVAHVMNDETTRKYLQSIKRLMTFCQRRYPTMPSKAVEFNSL

Q9JKB8 Pre-mRNA-splicing factor 18

1.5e-45

34.37

Show/hide

Query:  MDLLKQELLKKREALATE---TGGKRFFKRSEIEKKQIQQLRDKEKRELESKALRQSTTSAATAAAISTSSKSNASASASTASSSAAVNSNATASKSLTD
        MD+LK E+L+KR+ +         K++FKRSE+ KK+ +   ++   +++ K   Q   +                            +SN      L +
Subjt:  MDLLKQELLKKREALATE---TGGKRFFKRSEIEKKQIQQLRDKEKRELESKALRQSTTSAATAAAISTSSKSNASASASTASSSAAVNSNATASKSLTD

Query:  EQNIDNLVLPRLEVIRRLRFLKQPITLFGEDDDARLDRLKFVLKAGLFEVDSDLTEGQTNDFLRDIAELRKRQKTGMMSERKRRKKEDGAGEDGEGGGAD
        E+    + L R EVIRRLR   +P+ LFGE D     RL+      +  +  ++ +G  ND    + ++ ++    ++          G  E GE    +
Subjt:  EQNIDNLVLPRLEVIRRLRFLKQPITLFGEDDDARLDRLKFVLKAGLFEVDSDLTEGQTNDFLRDIAELRKRQKTGMMSERKRRKKEDGAGEDGEGGGAD

Query:  DESADGGSSGVDTDKDLKRMKANFDELCEEDKILVFFKKLLNEWNQELDDMPEAEKRTAKGKSMVATFKQCARYLHPLFKFCRKKVLPDDIRQALIVVVE
        D      ++ ++  + L       D+  + D I  F K LL  W +EL+   +  KR+ +GK   AT KQ   YL PLF+  RK+ LP DI++++  +++
Subjt:  DESADGGSSGVDTDKDLKRMKANFDELCEEDKILVFFKKLLNEWNQELDDMPEAEKRTAKGKSMVATFKQCARYLHPLFKFCRKKVLPDDIRQALIVVVE

Query:  CCMKRDYLAAMDQYIKMAIGNAPWPIGVTMVGIHERSAREKIYTNSVAHVMNDETTRKYLQSIKRLMTFCQRRYPTMPSKAVEFNSL
          ++R+Y+ A D Y++MAIGNAPWPIGVTMVGIH R+ REKI++  VAHV+NDET RKY+Q +KRLMT CQ+ +PT PSK VE+N+L
Subjt:  CCMKRDYLAAMDQYIKMAIGNAPWPIGVTMVGIHERSAREKIYTNSVAHVMNDETTRKYLQSIKRLMTFCQRRYPTMPSKAVEFNSL

Arabidopsis top hits

e value

%identity

Alignment

AT1G03140.1 splicing factor Prp18 family protein

1.4e-152

69.58

Show/hide

Query:  MDLLKQELLKKREALATETGGKRFFKRSEIEKKQIQQLRDKEKRELESKALRQSTTSAATAAAISTSSKSNASASASTASSSAAVNSNATA--SKSLTDE
        MDLL++E+LKKR++LA E+GGK+FFKRSEIE+K+IQ+LR++E+RE E KA R++  +A+     S+ S   +S +A++ASS ++ +  A    SK+LTDE
Subjt:  MDLLKQELLKKREALATETGGKRFFKRSEIEKKQIQQLRDKEKRELESKALRQSTTSAATAAAISTSSKSNASASASTASSSAAVNSNATA--SKSLTDE

Query:  QNIDNLVLPRLEVIRRLRFLKQPITLFGEDDDARLDRLKFVLKAGLFEVDSDLTEGQTNDFLRDIAELRKRQKTGMMSERKRRKKEDGAGEDGEGGGA-D
            NL+LPR EVIRRLRFLKQP+TLFGEDD +RLDRLK+VLK GLFEVDSD+TEGQTNDFLRDIAEL+KRQK+GMM +RKR+ +++   ++G+ G   +
Subjt:  QNIDNLVLPRLEVIRRLRFLKQPITLFGEDDDARLDRLKFVLKAGLFEVDSDLTEGQTNDFLRDIAELRKRQKTGMMSERKRRKKEDGAGEDGEGGGA-D

Query:  DESADGGSSGVDTDKDLKRMKANFDELCEEDKILVFFKKLLNEWNQELDDMPEAEKRTAKGKSMVATFKQCARYLHPLFKFCRKKVLPDDIRQALIVVVE
        DE + G SS VD DKD+KR+KANF++LC+EDKILVF+KKLL EW QELD M   E+RTAKGK MVATFKQCARYL PLF  CRKK LP DIRQAL+V+V 
Subjt:  DESADGGSSGVDTDKDLKRMKANFDELCEEDKILVFFKKLLNEWNQELDDMPEAEKRTAKGKSMVATFKQCARYLHPLFKFCRKKVLPDDIRQALIVVVE

Query:  CCMKRDYLAAMDQYIKMAIGNAPWPIGVTMVGIHERSAREKIYTNSVAHVMNDETTRKYLQSIKRLMTFCQRRYPTMPSKAVEFNSLANGSDLQSLLAEE
         C+KRDYLAAMD YIK+AIGNAPWPIGVTMVGIHERSAREKIYTNSVAH+MNDETTRKYLQS+KRLMTFCQRRYPTMPSKAVEFNSLANGSDLQSLLAEE
Subjt:  CCMKRDYLAAMDQYIKMAIGNAPWPIGVTMVGIHERSAREKIYTNSVAHVMNDETTRKYLQSIKRLMTFCQRRYPTMPSKAVEFNSLANGSDLQSLLAEE

Query:  RESGGGKQGGSDERLRIMPASEDS
        R  GG ++  S+ERLR+MP+  +S
Subjt:  RESGGGKQGGSDERLRIMPASEDS

AT1G54590.1 INVOLVED IN: RNA splicing

6.8e-91

63.45

Show/hide

Query:  RLDRLKFVLKAGLF-EVDSDLTEGQTNDFLRDIAELRKRQK-TGMMSERKRRKKEDGAGEDGEGGGADDESADGGSSGVDTDKDLKRM-KANFDELCEED
        RLDRLK+VLK GLF EVD+D+T+G+TNDFLRDI EL+KR++ +G+M++RKR+        D E  GA+ E             DLK + +ANF++LC+ED
Subjt:  RLDRLKFVLKAGLF-EVDSDLTEGQTNDFLRDIAELRKRQK-TGMMSERKRRKKEDGAGEDGEGGGADDESADGGSSGVDTDKDLKRM-KANFDELCEED

Query:  KILVFFKKLLNEWNQELDDMPEAEKRTAKGKSMVATFKQCARYLHPLFKFCRKKVLPDDIRQALIVVVECCMKRDYLAAMDQYIKMAIGNAPWPIGVTMV
        KILVF KKLL EW QEL+ M   E+RTA GK M+ATF QCARYL PLF  CR K LP DIRQ L+V+V C +KRDYL A  Q+IK+AIGNAPWPIGVTMV
Subjt:  KILVFFKKLLNEWNQELDDMPEAEKRTAKGKSMVATFKQCARYLHPLFKFCRKKVLPDDIRQALIVVVECCMKRDYLAAMDQYIKMAIGNAPWPIGVTMV

Query:  GIHERSAREKIYT-NSVAHVMNDETTRKYLQSIKRLMTFCQRRYPTMPSKAVEFNSLANGSDLQSLLAEERESGGGKQGGSDERLRIMPA
        GIHERSAREKI T +SVAH+MN+ETTRKYLQS+KRLMTFCQRRY  +PSK++EFNSLANGS+L SLLAEER     ++  S+ERL +MP+
Subjt:  GIHERSAREKIYT-NSVAHVMNDETTRKYLQSIKRLMTFCQRRYPTMPSKAVEFNSLANGSDLQSLLAEERESGGGKQGGSDERLRIMPA

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGATCTCCTGAAGCAAGAGCTTCTCAAGAAGCGTGAAGCCCTGGCCACCGAAACCGGCGGCAAACGCTTCTTCAAGCGATCCGAGATCGAGAAGAAGCAAATCCAGCA
GCTTCGCGACAAAGAGAAGCGCGAATTGGAGTCCAAAGCTCTCCGTCAATCCACCACCTCCGCCGCCACCGCCGCCGCCATCTCCACATCTTCCAAATCCAACGCATCAG
CCTCCGCCTCCACCGCTTCCTCTTCCGCCGCAGTTAACTCCAACGCTACCGCTTCCAAATCCCTAACCGACGAGCAGAACATCGACAACCTCGTCCTTCCCAGACTGGAA
GTAATCAGAAGGTTGCGGTTCCTGAAGCAGCCTATTACGCTTTTCGGGGAGGATGATGATGCTCGGCTCGACCGGTTGAAGTTTGTGCTGAAAGCGGGGCTGTTCGAGGT
GGACAGTGATTTGACCGAGGGGCAAACGAACGATTTTCTTCGGGATATTGCGGAGTTGAGGAAGCGGCAGAAGACGGGGATGATGAGCGAGAGGAAGAGGCGGAAGAAGG
AAGACGGGGCTGGGGAAGATGGAGAAGGGGGTGGGGCTGATGATGAAAGTGCTGATGGAGGGTCTAGTGGGGTCGATACTGATAAGGATTTGAAGAGAATGAAGGCGAAT
TTTGATGAATTATGTGAAGAAGATAAGATATTGGTGTTTTTTAAGAAGTTATTGAATGAGTGGAACCAGGAATTGGATGATATGCCTGAAGCAGAGAAGCGGACCGCGAA
AGGGAAGTCTATGGTGGCGACATTCAAGCAGTGTGCTCGTTATTTGCATCCCCTTTTCAAGTTTTGTAGGAAGAAGGTTCTTCCTGACGATATTCGACAAGCATTGATAG
TGGTCGTTGAATGTTGCATGAAACGAGACTATCTAGCTGCAATGGATCAATACATTAAGATGGCCATTGGAAATGCCCCATGGCCTATTGGAGTCACTATGGTTGGTATT
CACGAACGTTCAGCTCGTGAGAAGATTTACACCAACAGTGTAGCCCATGTCATGAATGATGAAACAACGAGGAAATACTTGCAATCAATCAAGAGATTGATGACGTTTTG
TCAACGGCGCTATCCGACGATGCCATCCAAGGCAGTAGAGTTTAACAGCTTAGCAAACGGCAGCGACCTGCAGTCCCTGCTAGCAGAAGAGAGAGAATCTGGAGGAGGCA
AGCAGGGTGGTTCCGATGAAAGGCTACGAATTATGCCCGCCTCAGAAGATAGCTAG

mRNA sequence

Show/hide mRNA sequence

TGTTTTTCAAAAAAGAAAAAAAAAACCCAGTGTTTATGTCTCGAATAAGACGTTCCCTTTTCCCAAATCTCTTCCAAACAACCCGAAAGTAAACCCTAACAAAATCCCGG
TAAGAACCCTAACGAAATCCCGGCGAGAACCCTAACAAAATTCCGGCGTGAACCAGAACCAATGGATCTCCTGAAGCAAGAGCTTCTCAAGAAGCGTGAAGCCCTGGCCA
CCGAAACCGGCGGCAAACGCTTCTTCAAGCGATCCGAGATCGAGAAGAAGCAAATCCAGCAGCTTCGCGACAAAGAGAAGCGCGAATTGGAGTCCAAAGCTCTCCGTCAA
TCCACCACCTCCGCCGCCACCGCCGCCGCCATCTCCACATCTTCCAAATCCAACGCATCAGCCTCCGCCTCCACCGCTTCCTCTTCCGCCGCAGTTAACTCCAACGCTAC
CGCTTCCAAATCCCTAACCGACGAGCAGAACATCGACAACCTCGTCCTTCCCAGACTGGAAGTAATCAGAAGGTTGCGGTTCCTGAAGCAGCCTATTACGCTTTTCGGGG
AGGATGATGATGCTCGGCTCGACCGGTTGAAGTTTGTGCTGAAAGCGGGGCTGTTCGAGGTGGACAGTGATTTGACCGAGGGGCAAACGAACGATTTTCTTCGGGATATT
GCGGAGTTGAGGAAGCGGCAGAAGACGGGGATGATGAGCGAGAGGAAGAGGCGGAAGAAGGAAGACGGGGCTGGGGAAGATGGAGAAGGGGGTGGGGCTGATGATGAAAG
TGCTGATGGAGGGTCTAGTGGGGTCGATACTGATAAGGATTTGAAGAGAATGAAGGCGAATTTTGATGAATTATGTGAAGAAGATAAGATATTGGTGTTTTTTAAGAAGT
TATTGAATGAGTGGAACCAGGAATTGGATGATATGCCTGAAGCAGAGAAGCGGACCGCGAAAGGGAAGTCTATGGTGGCGACATTCAAGCAGTGTGCTCGTTATTTGCAT
CCCCTTTTCAAGTTTTGTAGGAAGAAGGTTCTTCCTGACGATATTCGACAAGCATTGATAGTGGTCGTTGAATGTTGCATGAAACGAGACTATCTAGCTGCAATGGATCA
ATACATTAAGATGGCCATTGGAAATGCCCCATGGCCTATTGGAGTCACTATGGTTGGTATTCACGAACGTTCAGCTCGTGAGAAGATTTACACCAACAGTGTAGCCCATG
TCATGAATGATGAAACAACGAGGAAATACTTGCAATCAATCAAGAGATTGATGACGTTTTGTCAACGGCGCTATCCGACGATGCCATCCAAGGCAGTAGAGTTTAACAGC
TTAGCAAACGGCAGCGACCTGCAGTCCCTGCTAGCAGAAGAGAGAGAATCTGGAGGAGGCAAGCAGGGTGGTTCCGATGAAAGGCTACGAATTATGCCCGCCTCAGAAGA
TAGCTAGCTACTCAGTAAGAATATATCCTCTCCTGGCTGCTATTCTGTACCTTATTTCTATAATATGTAATCTAAAGCTCTTAAACATATAGTTTGGTAGTCAGTCATTC
AATTTCTGAGTGCTGTTTGAGGTTGAAGCCTGTATTATTCATACGTCGTCTTGTCAATGTCGAACATTTCATCGGTAAGTGCTATGCAACAATGTCGTCCAATGGAATAG
AATTTAACAGCTTTGCAACCTGCAGTCTCTGAAAAGTAAGGTAATCTGGATAAAGCAAGCAGGGCGTTCCGATGAAAGGCTGCGATCTATGCCGCCCTAGAAGATGGCTA
CCTGGTAATAAGATTCTCTCCTGGCTATCACTTTTTATGTCTCTATGAGATTTAATTTGAAACTTCATCAGTAAGTCATTGTATGAAAACTAATTGAAATTCAAGTCTAT
CAACTTTTTTTTTATATGAAACAGTGCTTCAGAACCTAAATATGCTTTTTGCCAAAGTAGGTATTGATTGCAGTAGCAAGCTTCTTATGAGTAAGATGGCAAGTGTTGGT
AGGAATAATTAA

Protein sequence

Show/hide protein sequence

MDLLKQELLKKREALATETGGKRFFKRSEIEKKQIQQLRDKEKRELESKALRQSTTSAATAAAISTSSKSNASASASTASSSAAVNSNATASKSLTDEQNIDNLVLPRLE
VIRRLRFLKQPITLFGEDDDARLDRLKFVLKAGLFEVDSDLTEGQTNDFLRDIAELRKRQKTGMMSERKRRKKEDGAGEDGEGGGADDESADGGSSGVDTDKDLKRMKAN
FDELCEEDKILVFFKKLLNEWNQELDDMPEAEKRTAKGKSMVATFKQCARYLHPLFKFCRKKVLPDDIRQALIVVVECCMKRDYLAAMDQYIKMAIGNAPWPIGVTMVGI
HERSAREKIYTNSVAHVMNDETTRKYLQSIKRLMTFCQRRYPTMPSKAVEFNSLANGSDLQSLLAEERESGGGKQGGSDERLRIMPASEDS

Sed0001544 (gene) of Chayote v1 genome