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Sed0001553 (gene) of Chayote v1 genome

Gene IDSed0001553
OrganismSechium edule (Chayote v1)
Description60S ribosomal protein L38
Genome locationLG09:3858360..3861591
RNA-Seq ExpressionSed0001553
SyntenySed0001553
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0022618 - ribonucleoprotein complex assembly (biological process)
GO:0005634 - nucleus (cellular component)
GO:0022625 - cytosolic large ribosomal subunit (cellular component)
GO:0003680 - AT DNA binding (molecular function)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR002675 - Ribosomal protein L38e
IPR038464 - Ribosomal protein L38e superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF5734444.1 AT-hook motif nuclear-localized protein 1 [Tripterygium wilfordii]8.3e-2684.21Show/hide
Query:  MPKQIHEIKDFLLTARRKDARSVKIKKSKDVVKFKVRCSKYLYTLCVFDTEKAEKLKQSLPPG-------WCIGRR
        MPKQIHEIKDFLLTARRKDARSVKIKKSKDVVKFKVRCS+YLYTLCVFDTEKA+KLKQSLPPG       +C+G R
Subjt:  MPKQIHEIKDFLLTARRKDARSVKIKKSKDVVKFKVRCSKYLYTLCVFDTEKAEKLKQSLPPG-------WCIGRR

KAF8402365.1 hypothetical protein HHK36_013319 [Tetracentron sinense]1.1e-2598.41Show/hide
Query:  MPKQIHEIKDFLLTARRKDARSVKIKKSKDVVKFKVRCSKYLYTLCVFDTEKAEKLKQSLPPG
        MPKQIHEIKDFLLTARRKDARSVKIKKSKDVVKFKVRCSKYLYTLCVFD+EKAEKLKQSLPPG
Subjt:  MPKQIHEIKDFLLTARRKDARSVKIKKSKDVVKFKVRCSKYLYTLCVFDTEKAEKLKQSLPPG

KAF9612100.1 hypothetical protein IFM89_038079 [Coptis chinensis]1.1e-2573.33Show/hide
Query:  MPKQIHEIKDFLLTARRKDARSVKIKKSKDVVKFKVRCSKYLYTLCVFDTEKAEKLKQSLPPGWCIGRRF-------------AFLGLVW
        MPKQIHEIKDFLLTARRKDARSVKIKKSKDVVKFKVRCSKYLYTLCVFD+EKA+KLKQSLPPG  +   F             A +GL+W
Subjt:  MPKQIHEIKDFLLTARRKDARSVKIKKSKDVVKFKVRCSKYLYTLCVFDTEKAEKLKQSLPPGWCIGRRF-------------AFLGLVW

PIA29695.1 hypothetical protein AQUCO_05800065v1 [Aquilegia coerulea]3.7e-2695.31Show/hide
Query:  MPKQIHEIKDFLLTARRKDARSVKIKKSKDVVKFKVRCSKYLYTLCVFDTEKAEKLKQSLPPGW
        MPKQIHEIKDFLLTARRKDARSVKIK+SKDVVKFKVRCSKYLYTLCVFD+EKA+KLKQSLPPGW
Subjt:  MPKQIHEIKDFLLTARRKDARSVKIKKSKDVVKFKVRCSKYLYTLCVFDTEKAEKLKQSLPPGW

XP_018828966.1 60S ribosomal protein L38-like [Juglans regia]8.3e-2698.41Show/hide
Query:  MPKQIHEIKDFLLTARRKDARSVKIKKSKDVVKFKVRCSKYLYTLCVFDTEKAEKLKQSLPPG
        MPKQIHEIKDFLLTARRKDARSVKIKKSKDVVKFKVRCSKYLYTLCVFDTEKA+KLKQSLPPG
Subjt:  MPKQIHEIKDFLLTARRKDARSVKIKKSKDVVKFKVRCSKYLYTLCVFDTEKAEKLKQSLPPG

TrEMBL top hitse value%identityAlignment
A0A2G5CEJ4 Uncharacterized protein1.8e-2695.31Show/hide
Query:  MPKQIHEIKDFLLTARRKDARSVKIKKSKDVVKFKVRCSKYLYTLCVFDTEKAEKLKQSLPPGW
        MPKQIHEIKDFLLTARRKDARSVKIK+SKDVVKFKVRCSKYLYTLCVFD+EKA+KLKQSLPPGW
Subjt:  MPKQIHEIKDFLLTARRKDARSVKIKKSKDVVKFKVRCSKYLYTLCVFDTEKAEKLKQSLPPGW

A0A2I4FBE3 60S ribosomal protein L38-like4.0e-2698.41Show/hide
Query:  MPKQIHEIKDFLLTARRKDARSVKIKKSKDVVKFKVRCSKYLYTLCVFDTEKAEKLKQSLPPG
        MPKQIHEIKDFLLTARRKDARSVKIKKSKDVVKFKVRCSKYLYTLCVFDTEKA+KLKQSLPPG
Subjt:  MPKQIHEIKDFLLTARRKDARSVKIKKSKDVVKFKVRCSKYLYTLCVFDTEKAEKLKQSLPPG

A0A2N9GKW6 Uncharacterized protein4.0e-2698.41Show/hide
Query:  MPKQIHEIKDFLLTARRKDARSVKIKKSKDVVKFKVRCSKYLYTLCVFDTEKAEKLKQSLPPG
        MPKQIHEIKDFLLTARRKDARSVKIKKSKDVVKFKVRCSKYLYTLCVFDTEKA+KLKQSLPPG
Subjt:  MPKQIHEIKDFLLTARRKDARSVKIKKSKDVVKFKVRCSKYLYTLCVFDTEKAEKLKQSLPPG

A0A444GBB5 Uncharacterized protein5.2e-2689.71Show/hide
Query:  MPKQIHEIKDFLLTARRKDARSVKIKKSKDVVKFKVRCSKYLYTLCVFDTEKAEKLKQSLPPG--WCI
        MPKQIHEIKDFLLTARRKDARSVKIK+SKDVVKFKVRC+KYLYTLCVFD+EKA+KLKQSLPPG  WC+
Subjt:  MPKQIHEIKDFLLTARRKDARSVKIKKSKDVVKFKVRCSKYLYTLCVFDTEKAEKLKQSLPPG--WCI

A0A7J7CK64 AT-hook motif nuclear-localized protein4.0e-2684.21Show/hide
Query:  MPKQIHEIKDFLLTARRKDARSVKIKKSKDVVKFKVRCSKYLYTLCVFDTEKAEKLKQSLPPG-------WCIGRR
        MPKQIHEIKDFLLTARRKDARSVKIKKSKDVVKFKVRCS+YLYTLCVFDTEKA+KLKQSLPPG       +C+G R
Subjt:  MPKQIHEIKDFLLTARRKDARSVKIKKSKDVVKFKVRCSKYLYTLCVFDTEKAEKLKQSLPPG-------WCIGRR

SwissProt top hitse value%identityAlignment
O22860 60S ribosomal protein L383.5e-2792.06Show/hide
Query:  MPKQIHEIKDFLLTARRKDARSVKIKKSKDVVKFKVRCSKYLYTLCVFDTEKAEKLKQSLPPG
        MPKQIHEIKDFLLTARRKDARSVKIK+SKD+VKFKVRCS+YLYTLCVFD EKA+KLKQSLPPG
Subjt:  MPKQIHEIKDFLLTARRKDARSVKIKKSKDVVKFKVRCSKYLYTLCVFDTEKAEKLKQSLPPG

P46291 60S ribosomal protein L386.6e-2690.48Show/hide
Query:  MPKQIHEIKDFLLTARRKDARSVKIKKSKDVVKFKVRCSKYLYTLCVFDTEKAEKLKQSLPPG
        MPKQIHEIKDFLLTARRKDAR+VKIKK+KD+VKFKVRCSKYLYTLCV D EKA+KLKQSLPPG
Subjt:  MPKQIHEIKDFLLTARRKDARSVKIKKSKDVVKFKVRCSKYLYTLCVFDTEKAEKLKQSLPPG

P63173 60S ribosomal protein L381.2e-2278.79Show/hide
Query:  MPKQIHEIKDFLLTARRKDARSVKIKKSKDVVKFKVRCSKYLYTLCVFDTEKAEKLKQSLPPGWCI
        MP++I EIKDFLLTARRKDA+SVKIKK+KD VKFKVRCS+YLYTL + D EKAEKLKQSLPPG  +
Subjt:  MPKQIHEIKDFLLTARRKDARSVKIKKSKDVVKFKVRCSKYLYTLCVFDTEKAEKLKQSLPPGWCI

Q32PB9 60S ribosomal protein L381.2e-2278.79Show/hide
Query:  MPKQIHEIKDFLLTARRKDARSVKIKKSKDVVKFKVRCSKYLYTLCVFDTEKAEKLKQSLPPGWCI
        MP++I EIKDFLLTARRKDA+SVKIKK+KD VKFKVRCS+YLYTL + D EKAEKLKQSLPPG  +
Subjt:  MPKQIHEIKDFLLTARRKDARSVKIKKSKDVVKFKVRCSKYLYTLCVFDTEKAEKLKQSLPPGWCI

Q95V84 60S ribosomal protein L384.7e-2481.82Show/hide
Query:  MPKQIHEIKDFLLTARRKDARSVKIKKSKDVVKFKVRCSKYLYTLCVFDTEKAEKLKQSLPPGWCI
        MPKQIHEIKDFLLTARRKDA+SVKIKK+KD VKFKVRCS+YLYTL + D EKA+KLKQSLPPG  +
Subjt:  MPKQIHEIKDFLLTARRKDARSVKIKKSKDVVKFKVRCSKYLYTLCVFDTEKAEKLKQSLPPGWCI

Arabidopsis top hitse value%identityAlignment
AT2G43460.1 Ribosomal L38e protein family2.5e-2892.06Show/hide
Query:  MPKQIHEIKDFLLTARRKDARSVKIKKSKDVVKFKVRCSKYLYTLCVFDTEKAEKLKQSLPPG
        MPKQIHEIKDFLLTARRKDARSVKIK+SKD+VKFKVRCS+YLYTLCVFD EKA+KLKQSLPPG
Subjt:  MPKQIHEIKDFLLTARRKDARSVKIKKSKDVVKFKVRCSKYLYTLCVFDTEKAEKLKQSLPPG

AT3G59540.1 Ribosomal L38e protein family2.5e-2892.06Show/hide
Query:  MPKQIHEIKDFLLTARRKDARSVKIKKSKDVVKFKVRCSKYLYTLCVFDTEKAEKLKQSLPPG
        MPKQIHEIKDFLLTARRKDARSVKIK+SKD+VKFKVRCS+YLYTLCVFD EKA+KLKQSLPPG
Subjt:  MPKQIHEIKDFLLTARRKDARSVKIKKSKDVVKFKVRCSKYLYTLCVFDTEKAEKLKQSLPPG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCGAAGCAGATTCATGAGATTAAAGATTTCCTTCTCACTGCAAGAAGGAAGGATGCTCGTTCTGTGAAAATTAAGAAAAGCAAAGATGTGGTGAAGTTCAAAGTCAG
ATGCTCCAAATATCTCTATACTCTGTGTGTTTTCGACACTGAGAAGGCTGAAAAGTTGAAACAATCTCTTCCACCAGGGTGGTGCATTGGTCGAAGATTTGCATTTTTAG
GGCTTGTTTGGCTACGGCGGGAAGGGAAGGGAAGTAAATTATTGTTTGGTGAGAAGGGAAGAGAAGTGATATGA
mRNA sequenceShow/hide mRNA sequence
CAGTTCTTCATCTTCTCCACAATGCCGAAGCAGATTCATGAGATTAAAGATTTCCTTCTCACTGCAAGAAGGAAGGATGCTCGTTCTGTGAAAATTAAGAAAAGCAAAGA
TGTGGTGAAGTTCAAAGTCAGATGCTCCAAATATCTCTATACTCTGTGTGTTTTCGACACTGAGAAGGCTGAAAAGTTGAAACAATCTCTTCCACCAGGGTGGTGCATTG
GTCGAAGATTTGCATTTTTAGGGCTTGTTTGGCTACGGCGGGAAGGGAAGGGAAGTAAATTATTGTTTGGTGAGAAGGGAAGAGAAGTGATATGATAGTAAATTGGTGTT
TGGTGAGAAGGGAAGGGTAGTGAAGAAATGGAGATTTTTTTTAAAACTAATAGATATTTAATATTTTAATATAAAA
Protein sequenceShow/hide protein sequence
MPKQIHEIKDFLLTARRKDARSVKIKKSKDVVKFKVRCSKYLYTLCVFDTEKAEKLKQSLPPGWCIGRRFAFLGLVWLRREGKGSKLLFGEKGREVI