CuGenDBv2

Gene ID	Sed0001576
Organism	Sechium edule (Chayote v1)
Description	ferredoxin-thioredoxin reductase, variable chain-like
Genome location	LG04:39348057..39349007
RNA-Seq Expression	Sed0001576
Synteny	Sed0001576
Gene Ontology terms	GO:0015979 - photosynthesis (biological process) GO:0016310 - phosphorylation (biological process) GO:0030148 - sphingolipid biosynthetic process (biological process) GO:0003951 - NAD+ kinase activity (molecular function) GO:0017050 - D-erythro-sphingosine kinase activity (molecular function)
InterPro domains	IPR004207 - Ferredoxin thioredoxin reductase, alpha chain IPR008990 - Electron transport accessory-like domain superfamily IPR044166 - Ferredoxin-thioredoxin reductase, variable chain

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6601079.1 hypothetical protein SDJN03_06312, partial [Cucurbita argyrosperma subsp. sororia]

5.1e-66

82.22

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Query:  MISIASSIGVMPSPALASATARPTCSMTVFSSADVKSSYSLFVSSLSSVVVNPF--SITRGRRFLSEVTIGSDSGTSSSATAISAAATTSLSEEETGEAA
        MI++A+SIGV+P+P  A   ARP CSMTVFSS D KSSYS  VSSLSSVVVNPF  S+TRGRRF SEVT+ SDSGT SSA A+S AATTSLSE+ET EAA
Subjt:  MISIASSIGVMPSPALASATARPTCSMTVFSSADVKSSYSLFVSSLSSVVVNPF--SITRGRRFLSEVTIGSDSGTSSSATAISAAATTSLSEEETGEAA

Query:  AARIGAKVRVKVPLKVYHVAKLPDADLEGMEGVLKDYVRVWKGKNVSANLPYKVEFVVPVEGRPPVKFVAHLKEEEFEYV
        AARIGA+VRVKVPLK+YHVAKLP+ADLEGMEGVLKDYVRVWKGK VSANLPYKVEFVVPVEGRPPVKF+AHLKEEEFEYV
Subjt:  AARIGAKVRVKVPLKVYHVAKLPDADLEGMEGVLKDYVRVWKGKNVSANLPYKVEFVVPVEGRPPVKFVAHLKEEEFEYV

KAG7031885.1 hypothetical protein SDJN02_05926, partial [Cucurbita argyrosperma subsp. argyrosperma]

2.3e-66

82.78

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Query:  MISIASSIGVMPSPALASATARPTCSMTVFSSADVKSSYSLFVSSLSSVVVNPF--SITRGRRFLSEVTIGSDSGTSSSATAISAAATTSLSEEETGEAA
        MI++A+SIGV+P+P  A   ARP CSMTVFSS D KSSYS  VSSLSSVVVNPF  S+TRGRRF SEVT+ SDSGT SSA A+S AATTSLSE+ET EAA
Subjt:  MISIASSIGVMPSPALASATARPTCSMTVFSSADVKSSYSLFVSSLSSVVVNPF--SITRGRRFLSEVTIGSDSGTSSSATAISAAATTSLSEEETGEAA

Query:  AARIGAKVRVKVPLKVYHVAKLPDADLEGMEGVLKDYVRVWKGKNVSANLPYKVEFVVPVEGRPPVKFVAHLKEEEFEYV
        AARIGA+VRVKVPLKVYHVAKLP+ADLEGMEGVLKDYVRVWKGK VSANLPYKVEFVVPVEGRPPVKF+AHLKEEEFEYV
Subjt:  AARIGAKVRVKVPLKVYHVAKLPDADLEGMEGVLKDYVRVWKGKNVSANLPYKVEFVVPVEGRPPVKFVAHLKEEEFEYV

XP_004147092.1 ferredoxin-thioredoxin reductase, variable chain [Cucumis sativus]

6.7e-66

83.52

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Query:  MISIASSIGVMPSPALASAT--ARPTCSMTVFSSADVKSSYSLFVSSLSSVVVNPF--SITRGRRFLSEVTIGSDSGTSSSATAISAAATTSLSEEETGE
        MISIA+SIGV+PSPA +SA+  AR  CSMTVFS+ADVKSS+S  V SLSS+VVNPF  SI RGRR  SEV + SDSGTSSSATA+S AATTSLSEEET E
Subjt:  MISIASSIGVMPSPALASAT--ARPTCSMTVFSSADVKSSYSLFVSSLSSVVVNPF--SITRGRRFLSEVTIGSDSGTSSSATAISAAATTSLSEEETGE

Query:  AAAARIGAKVRVKVPLKVYHVAKLPDADLEGMEGVLKDYVRVWKGKNVSANLPYKVEFVVPVEGRPPVKFVAHLKEEEFEYV
        AAAARIGA+VRVKVPLKVYHVAKLPDA+LEGMEGV+KDYVRVWKGK VSANLPYKVEFVVPVEGRPPVKFVAHLKEEEFEYV
Subjt:  AAAARIGAKVRVKVPLKVYHVAKLPDADLEGMEGVLKDYVRVWKGKNVSANLPYKVEFVVPVEGRPPVKFVAHLKEEEFEYV

XP_022957590.1 ferredoxin-thioredoxin reductase, variable chain, chloroplastic-like [Cucurbita moschata]

7.9e-67

83.89

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Query:  MISIASSIGVMPSPALASATARPTCSMTVFSSADVKSSYSLFVSSLSSVVVNPF--SITRGRRFLSEVTIGSDSGTSSSATAISAAATTSLSEEETGEAA
        MI++A+SIGV+P+P  A   ARP CSMTVFSS D KSSYS  VSSLSSVVVNPF  SITRGRRF SEVT+ SDSGT SSA A+S AATTSLSE+ET EAA
Subjt:  MISIASSIGVMPSPALASATARPTCSMTVFSSADVKSSYSLFVSSLSSVVVNPF--SITRGRRFLSEVTIGSDSGTSSSATAISAAATTSLSEEETGEAA

Query:  AARIGAKVRVKVPLKVYHVAKLPDADLEGMEGVLKDYVRVWKGKNVSANLPYKVEFVVPVEGRPPVKFVAHLKEEEFEYV
        AARIGA+VRVKVPLKVYHVAKLP+ADLEGMEGVLKDYVRVWKGK VSANLPYKVEFVVPVEGRPPVKFVAHLKEEEFEYV
Subjt:  AARIGAKVRVKVPLKVYHVAKLPDADLEGMEGVLKDYVRVWKGKNVSANLPYKVEFVVPVEGRPPVKFVAHLKEEEFEYV

XP_023549490.1 ferredoxin-thioredoxin reductase, variable chain, chloroplastic-like [Cucurbita pepo subsp. pepo]

3.9e-66

83.33

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Query:  MISIASSIGVMPSPALASATARPTCSMTVFSSADVKSSYSLFVSSLSSVVVNPF--SITRGRRFLSEVTIGSDSGTSSSATAISAAATTSLSEEETGEAA
        MI++A+SIGV+P+P  A   ARP CSMTVFSS D KSSYS  VSSLSSVVVNPF  SI RGRRF SEVT+ SDSGT SSA A+S AATTSLSE+ET EAA
Subjt:  MISIASSIGVMPSPALASATARPTCSMTVFSSADVKSSYSLFVSSLSSVVVNPF--SITRGRRFLSEVTIGSDSGTSSSATAISAAATTSLSEEETGEAA

Query:  AARIGAKVRVKVPLKVYHVAKLPDADLEGMEGVLKDYVRVWKGKNVSANLPYKVEFVVPVEGRPPVKFVAHLKEEEFEYV
        AARIGA+VRVKVPLKVYHVAKLP+ADLEGMEGVLKDYVRVWKGK VSANLPYKVEFVVPVEGRPPVKFVAHLKEEEFEYV
Subjt:  AARIGAKVRVKVPLKVYHVAKLPDADLEGMEGVLKDYVRVWKGKNVSANLPYKVEFVVPVEGRPPVKFVAHLKEEEFEYV

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KV36 FeThRed_A domain-containing protein

3.3e-66

83.52

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Query:  MISIASSIGVMPSPALASAT--ARPTCSMTVFSSADVKSSYSLFVSSLSSVVVNPF--SITRGRRFLSEVTIGSDSGTSSSATAISAAATTSLSEEETGE
        MISIA+SIGV+PSPA +SA+  AR  CSMTVFS+ADVKSS+S  V SLSS+VVNPF  SI RGRR  SEV + SDSGTSSSATA+S AATTSLSEEET E
Subjt:  MISIASSIGVMPSPALASAT--ARPTCSMTVFSSADVKSSYSLFVSSLSSVVVNPF--SITRGRRFLSEVTIGSDSGTSSSATAISAAATTSLSEEETGE

Query:  AAAARIGAKVRVKVPLKVYHVAKLPDADLEGMEGVLKDYVRVWKGKNVSANLPYKVEFVVPVEGRPPVKFVAHLKEEEFEYV
        AAAARIGA+VRVKVPLKVYHVAKLPDA+LEGMEGV+KDYVRVWKGK VSANLPYKVEFVVPVEGRPPVKFVAHLKEEEFEYV
Subjt:  AAAARIGAKVRVKVPLKVYHVAKLPDADLEGMEGVLKDYVRVWKGKNVSANLPYKVEFVVPVEGRPPVKFVAHLKEEEFEYV

A0A5D3D039 Sphingoid long-chain bases kinase 1

1.8e-64

80.77

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Query:  MISIASSIGVMPS--PALASATARPTCSMTVFSSADVKSSYSLFVSSLSSVVVNPF--SITRGRRFLSEVTIGSDSGTSSSATAISAAATTSLSEEETGE
        MI IA+SIG+MP   P+ AS  AR  CSMTVFS++DV+SS+S  V SLSSVVVNPF  SI RGRR  SEV++ SDSGTSSSATA+S AATTSLSEEET E
Subjt:  MISIASSIGVMPS--PALASATARPTCSMTVFSSADVKSSYSLFVSSLSSVVVNPF--SITRGRRFLSEVTIGSDSGTSSSATAISAAATTSLSEEETGE

Query:  AAAARIGAKVRVKVPLKVYHVAKLPDADLEGMEGVLKDYVRVWKGKNVSANLPYKVEFVVPVEGRPPVKFVAHLKEEEFEYV
        AAAARIGA+VRVKVPLKVYHVAKLP+A+LEGMEGVLKDYVRVWKGK VSANLPYKVEFVVPVEGRPP+KFVAHLKEEEFEYV
Subjt:  AAAARIGAKVRVKVPLKVYHVAKLPDADLEGMEGVLKDYVRVWKGKNVSANLPYKVEFVVPVEGRPPVKFVAHLKEEEFEYV

A0A6J1H0Z6 ferredoxin-thioredoxin reductase, variable chain, chloroplastic-like

3.8e-67

83.89

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Query:  MISIASSIGVMPSPALASATARPTCSMTVFSSADVKSSYSLFVSSLSSVVVNPF--SITRGRRFLSEVTIGSDSGTSSSATAISAAATTSLSEEETGEAA
        MI++A+SIGV+P+P  A   ARP CSMTVFSS D KSSYS  VSSLSSVVVNPF  SITRGRRF SEVT+ SDSGT SSA A+S AATTSLSE+ET EAA
Subjt:  MISIASSIGVMPSPALASATARPTCSMTVFSSADVKSSYSLFVSSLSSVVVNPF--SITRGRRFLSEVTIGSDSGTSSSATAISAAATTSLSEEETGEAA

Query:  AARIGAKVRVKVPLKVYHVAKLPDADLEGMEGVLKDYVRVWKGKNVSANLPYKVEFVVPVEGRPPVKFVAHLKEEEFEYV
        AARIGA+VRVKVPLKVYHVAKLP+ADLEGMEGVLKDYVRVWKGK VSANLPYKVEFVVPVEGRPPVKFVAHLKEEEFEYV
Subjt:  AARIGAKVRVKVPLKVYHVAKLPDADLEGMEGVLKDYVRVWKGKNVSANLPYKVEFVVPVEGRPPVKFVAHLKEEEFEYV

A0A6J1HQV7 ferredoxin-thioredoxin reductase, variable chain-like

1.6e-65

82.42

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Query:  MISIASSIGVMPSPALASATA--RPTCSMTVFSSADVKSSYSLFVSSLSSVVVNPFS--ITRGRRFLSEVTIGSDSGTSSSATAISAAATTSLSEEETGE
        MISIASS+GV+PSP  ASA+A  RPTCS+TV +S DVKSSYS  VSSLSSVV NPF+  I RGRR  SEVT+ SDS  SSSAT +SAAA TSLSEEETGE
Subjt:  MISIASSIGVMPSPALASATA--RPTCSMTVFSSADVKSSYSLFVSSLSSVVVNPFS--ITRGRRFLSEVTIGSDSGTSSSATAISAAATTSLSEEETGE

Query:  AAAARIGAKVRVKVPLKVYHVAKLPDADLEGMEGVLKDYVRVWKGKNVSANLPYKVEFVVPVEGRPPVKFVAHLKEEEFEYV
        AAA RIGAKVRVKVPLKVYHVAKLP+A+LEGMEGVLKDYVRVWKGK+VSANLPYKVEFVVPVEGRPPVKFVAHLKE+EFEYV
Subjt:  AAAARIGAKVRVKVPLKVYHVAKLPDADLEGMEGVLKDYVRVWKGKNVSANLPYKVEFVVPVEGRPPVKFVAHLKEEEFEYV

A0A6J1KDF2 ferredoxin-thioredoxin reductase, variable chain, chloroplastic-like

5.6e-66

82.78

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Query:  MISIASSIGVMPSPALASATARPTCSMTVFSSADVKSSYSLFVSSLSSVVVNPF--SITRGRRFLSEVTIGSDSGTSSSATAISAAATTSLSEEETGEAA
        MI++A+SIGV+P+P  A   ARP CSMTVFSS D KSSYS  VSSLSSVVVNPF  SITRGRRF SEVT+ SDSGT SSA A+S AA TSLSE+ET EAA
Subjt:  MISIASSIGVMPSPALASATARPTCSMTVFSSADVKSSYSLFVSSLSSVVVNPF--SITRGRRFLSEVTIGSDSGTSSSATAISAAATTSLSEEETGEAA

Query:  AARIGAKVRVKVPLKVYHVAKLPDADLEGMEGVLKDYVRVWKGKNVSANLPYKVEFVVPVEGRPPVKFVAHLKEEEFEYV
        AARIGA+VRVKVPL VYHVAKLP+ADLEGMEGVLKDYVRVWKGK VSANLPYKVEFVVPVEGRPPVKFVAHLKEEEFEYV
Subjt:  AARIGAKVRVKVPLKVYHVAKLPDADLEGMEGVLKDYVRVWKGKNVSANLPYKVEFVVPVEGRPPVKFVAHLKEEEFEYV

SwissProt top hits

e value

%identity

Alignment

P38365 Ferredoxin-thioredoxin reductase, variable chain, chloroplastic

1.6e-17

38.46

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Query:  IASSIGVMPSPALAS---ATARPTCSMTVFSSADVKSSYSLFVSSLSSVVVNPFSITRGRRFLS---EVTIGSDSGTSSSATAISAAATTSLSEEETGEA
        + + + VM S   AS   ATA  T  + +F S +  S+     +  S++     + TR R  L+   EV + SD     S+T   +++++   E+E  + 
Subjt:  IASSIGVMPSPALAS---ATARPTCSMTVFSSADVKSSYSLFVSSLSSVVVNPFSITRGRRFLS---EVTIGSDSGTSSSATAISAAATTSLSEEETGEA

Query:  AAARIGAKVRVKVPLKVYHVAKLPDADL-EGMEGVLKDYVRVWKGKNVSANLPYKVEFVVPVEGRPPVKFVAHLKEEEFEYV
           ++G KV+VK PLKVYHV KLP+ +L   M GV+K YV  WKGK +S N P+KVE+ + V  R  VK V HLKEEEFE +
Subjt:  AAARIGAKVRVKVPLKVYHVAKLPDADL-EGMEGVLKDYVRVWKGKNVSANLPYKVEFVVPVEGRPPVKFVAHLKEEEFEYV

P80680 Ferredoxin-thioredoxin reductase, variable chain

5.1e-24

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Query:  ATTSLSEEETGEAAAARIGAKVRVKVPLKVYHVAKLPDADLEGMEGVLKDYVRVWKGKNVSANLPYKVEFVVPVEGRP-PVKFVAHLKEEEFEYV
        A+  ++ EE   AAA +IG +VRV  PL+VYHV K PD D++GMEGV+K YV VWKGK V+AN P+KVEF + VEG+P PV+F AHL+E+EFE+V
Subjt:  ATTSLSEEETGEAAAARIGAKVRVKVPLKVYHVAKLPDADLEGMEGVLKDYVRVWKGKNVSANLPYKVEFVVPVEGRP-PVKFVAHLKEEEFEYV

Arabidopsis top hits

e value

%identity

Alignment

AT5G08410.1 ferredoxin/thioredoxin reductase subunit A (variable subunit) 2

1.1e-26

45.76

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Query:  SPALASATARPTCSMTVFSSADVKSSYSLFVSSLSSVVVNPFSITRGR--------RFLSEVTIGSDSGTSSSATAISAA---ATTSLSEEETGEAAAAR
        SPA+ +A  RP  S     +A +    S+  SS S  V    S + GR        R   + TI  D    S+A+  + A   ++TSL  EE  E A  +
Subjt:  SPALASATARPTCSMTVFSSADVKSSYSLFVSSLSSVVVNPFSITRGR--------RFLSEVTIGSDSGTSSSATAISAA---ATTSLSEEETGEAAAAR

Query:  IGAKVRVKVPLKVYHVAKLPDADLEGMEGVLKDYVRVWKGKNVSANLPYKVEFVVPVEGRPPVKFVAHLKEEEFEYV
        IGA+VRV VPLKVYHV ++P+ +L GMEG +KDYV +WKGK +SANLP+KV+FV  +EGR PVKF  HLKE+EFE +
Subjt:  IGAKVRVKVPLKVYHVAKLPDADLEGMEGVLKDYVRVWKGKNVSANLPYKVEFVVPVEGRPPVKFVAHLKEEEFEYV

AT5G23440.1 ferredoxin/thioredoxin reductase subunit A (variable subunit) 1

1.4e-29

47.46

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Query:  SPALASATARPTCSMTVFSSADVKSSYSLFVSSLSSVVVNPFSITRGR--------RFLSEVTIGSDSGTSSSATAISAAATTS---LSEEETGEAAAAR
        SPA+A+A  RP+    + +SA   ++  +   +L S +V P S+   +        R  S  TI  D     SA +I+A A  S    SEEE    A A+
Subjt:  SPALASATARPTCSMTVFSSADVKSSYSLFVSSLSSVVVNPFSITRGR--------RFLSEVTIGSDSGTSSSATAISAAATTS---LSEEETGEAAAAR

Query:  IGAKVRVKVPLKVYHVAKLPDADLEGMEGVLKDYVRVWKGKNVSANLPYKVEFVVPVEGRPPVKFVAHLKEEEFEYV
        IG++VRV  PLKVYHV ++P+ DLEGMEG LKDYV VWKGK +SANLPYK+EF   +EGR  VKFV+HLKE+EFE++
Subjt:  IGAKVRVKVPLKVYHVAKLPDADLEGMEGVLKDYVRVWKGKNVSANLPYKVEFVVPVEGRPPVKFVAHLKEEEFEYV

Sequences

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CDS sequence

Show/hide CDS sequence

ATGATCAGTATTGCAAGCAGTATCGGTGTGATGCCATCGCCGGCGCTGGCATCGGCAACCGCTCGTCCCACCTGTTCTATGACGGTATTCTCCAGCGCCGATGTCAAATC
GTCCTATTCCTTGTTCGTTAGTTCTCTATCCTCAGTTGTTGTTAATCCGTTCTCGATTACAAGAGGAAGAAGATTCCTCAGCGAGGTTACGATCGGATCAGATTCCGGCA
CTTCGTCTTCAGCCACTGCTATTTCGGCGGCGGCGACGACGTCATTGTCGGAGGAGGAGACTGGCGAAGCGGCCGCCGCTAGAATTGGAGCGAAAGTTAGGGTTAAGGTG
CCTTTGAAGGTTTATCACGTAGCTAAGTTGCCGGATGCGGATCTCGAGGGAATGGAAGGAGTGCTGAAGGATTATGTGCGCGTTTGGAAGGGGAAGAACGTCTCTGCTAA
TCTTCCGTATAAGGTGGAGTTTGTTGTTCCGGTCGAAGGCCGTCCACCGGTGAAATTCGTCGCTCATCTCAAGGAGGAAGAATTTGAATACGTTTAA

mRNA sequence

Show/hide mRNA sequence

TGAATTCTAAAATTAAATTAACAAAACAAAGAGGAAATTTCTGTAAAATCTCTCAATAATATATAATCCCTTTCCCTCTTCGAGAAACAACTCCACCGGCGACACAGAAA
TGATCAGTATTGCAAGCAGTATCGGTGTGATGCCATCGCCGGCGCTGGCATCGGCAACCGCTCGTCCCACCTGTTCTATGACGGTATTCTCCAGCGCCGATGTCAAATCG
TCCTATTCCTTGTTCGTTAGTTCTCTATCCTCAGTTGTTGTTAATCCGTTCTCGATTACAAGAGGAAGAAGATTCCTCAGCGAGGTTACGATCGGATCAGATTCCGGCAC
TTCGTCTTCAGCCACTGCTATTTCGGCGGCGGCGACGACGTCATTGTCGGAGGAGGAGACTGGCGAAGCGGCCGCCGCTAGAATTGGAGCGAAAGTTAGGGTTAAGGTGC
CTTTGAAGGTTTATCACGTAGCTAAGTTGCCGGATGCGGATCTCGAGGGAATGGAAGGAGTGCTGAAGGATTATGTGCGCGTTTGGAAGGGGAAGAACGTCTCTGCTAAT
CTTCCGTATAAGGTGGAGTTTGTTGTTCCGGTCGAAGGCCGTCCACCGGTGAAATTCGTCGCTCATCTCAAGGAGGAAGAATTTGAATACGTTTAATCAGGCTTATTGGA
TCATCAGGACAAGGCAATTACTGGTTTTCCGATCTCGGTATTCATCCGAAGCTTCCTTGTGCAGTATTATTGTCAACCTTTCAAGGTTTGATCCGCTTCCTTTTACGCTT
TGCCTTTATATTGTAGAAAATTGCTCGAGTGTTTTTCTTTTGAGCTAACTTTCTTGATTATTGATGTGGCTCTGTAAAAATAATTGAACCAAGAGATGGTAAATTTAGTC
ATCTAATACATGTCGAATCAAATGGTTTCAACCACTATTGTTAAGATAAATGCCTACTGATTCTTGTTGCT

Protein sequence

Show/hide protein sequence

MISIASSIGVMPSPALASATARPTCSMTVFSSADVKSSYSLFVSSLSSVVVNPFSITRGRRFLSEVTIGSDSGTSSSATAISAAATTSLSEEETGEAAAARIGAKVRVKV
PLKVYHVAKLPDADLEGMEGVLKDYVRVWKGKNVSANLPYKVEFVVPVEGRPPVKFVAHLKEEEFEYV

Sed0001576 (gene) of Chayote v1 genome