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Sed0001602 (gene) of Chayote v1 genome

Gene IDSed0001602
OrganismSechium edule (Chayote v1)
DescriptionRibosomal protein-like protein
Genome locationLG06:70130..71903
RNA-Seq ExpressionSed0001602
SyntenySed0001602
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6581756.1 hypothetical protein SDJN03_21758, partial [Cucurbita argyrosperma subsp. sororia]1.7e-3474.77Show/hide
Query:  SGRAQRRKVPSPRELVSHYESQGLSSEDASMKVIEDLQNALFRVISSGRARKDKLLLDTSKKLDAANHRLAILDLKLDSKPGYAHTFALALASASAFNAM
        SG AQRRK+PSP+ELVSHYESQGL+S DAS+KVIEDLQNAL R+ISSGR +KDKLL+DTS+K+DA N RLAILDLKLDSKPGYA TFAL LAS S  N +
Subjt:  SGRAQRRKVPSPRELVSHYESQGLSSEDASMKVIEDLQNALFRVISSGRARKDKLLLDTSKKLDAANHRLAILDLKLDSKPGYAHTFALALASASAFNAM

Query:  ATATPHI
            PH+
Subjt:  ATATPHI

KAG7026194.1 hypothetical protein SDJN02_12693, partial [Cucurbita argyrosperma subsp. argyrosperma]1.7e-3474.77Show/hide
Query:  SGRAQRRKVPSPRELVSHYESQGLSSEDASMKVIEDLQNALFRVISSGRARKDKLLLDTSKKLDAANHRLAILDLKLDSKPGYAHTFALALASASAFNAM
        SG AQRRK+PSP+ELVSHYESQGL+S DAS+KVIEDLQNAL R+ISSGR +KDKLL+DTS+K+DA N RLAILDLKLDSKPGYA TFAL LAS S  N +
Subjt:  SGRAQRRKVPSPRELVSHYESQGLSSEDASMKVIEDLQNALFRVISSGRARKDKLLLDTSKKLDAANHRLAILDLKLDSKPGYAHTFALALASASAFNAM

Query:  ATATPHI
            PH+
Subjt:  ATATPHI

XP_022955496.1 uncharacterized protein LOC111457504 [Cucurbita moschata]2.3e-3469.49Show/hide
Query:  SGRAQRRKVPSPRELVSHYESQGLSSEDASMKVIEDLQNALFRVISSGRARKDKLLLDTSKKLDAANHRLAILDLKLDSKPGYAHTFALALASASAFNAM
        SG AQRRK+PSP+ELVSHYESQGL+S DAS+KVIEDLQNAL R+ISSGR +KDKLL+DTS+K+DA N RLAILDLKLDSKPGYA TFAL LAS S  N +
Subjt:  SGRAQRRKVPSPRELVSHYESQGLSSEDASMKVIEDLQNALFRVISSGRARKDKLLLDTSKKLDAANHRLAILDLKLDSKPGYAHTFALALASASAFNAM

Query:  ATATPHI------LWLSI
            PH+      +W S+
Subjt:  ATATPHI------LWLSI

XP_022980748.1 uncharacterized protein LOC111480022 [Cucurbita maxima]1.1e-3364.06Show/hide
Query:  QSMGDSNSVGSGRAQRRKVPSPRELVSHYESQGLSSEDASMKVIEDLQNALFRVISSGRARKDKLLLDTSKKLDAANHRLAILDLKLDSKPGYAHTFALA
        Q    +  + S  AQRRK+PSP+ELVSHYESQGL+S DAS+KVIEDLQNAL R+ISSGR +KDKLL+DTS+K+DA N RLAILDLKLDSKPGYA TFAL 
Subjt:  QSMGDSNSVGSGRAQRRKVPSPRELVSHYESQGLSSEDASMKVIEDLQNALFRVISSGRARKDKLLLDTSKKLDAANHRLAILDLKLDSKPGYAHTFALA

Query:  LASASAFNAMATATPHI------LWLSI
        LAS S  N +    PH+      +W S+
Subjt:  LASASAFNAMATATPHI------LWLSI

XP_023527033.1 uncharacterized protein LOC111790380 [Cucurbita pepo subsp. pepo]2.3e-3469.49Show/hide
Query:  SGRAQRRKVPSPRELVSHYESQGLSSEDASMKVIEDLQNALFRVISSGRARKDKLLLDTSKKLDAANHRLAILDLKLDSKPGYAHTFALALASASAFNAM
        SG AQRRK+PSP+ELVSHYESQGL+S DAS+KVIEDLQNAL R+ISSGR +KDKLL+DTS+K+DA N RLAILDLKLDSKPGYA TFAL LAS S  N +
Subjt:  SGRAQRRKVPSPRELVSHYESQGLSSEDASMKVIEDLQNALFRVISSGRARKDKLLLDTSKKLDAANHRLAILDLKLDSKPGYAHTFALALASASAFNAM

Query:  ATATPHI------LWLSI
            PH+      +W S+
Subjt:  ATATPHI------LWLSI

TrEMBL top hitse value%identityAlignment
A0A0A0L3B6 Uncharacterized protein5.1e-3267.86Show/hide
Query:  RKVPSPRELVSHYESQGLSSEDASMKVIEDLQNALFRVISSGRARKDKLLLDTSKKLDAANHRLAILDLKLDSKPGYAHTFALALASASAFNAMATATPH
        RK PSP+EL+SHYESQGL+S DAS+KVI+DLQNALFR+ISSGR  KDK LL+TS+KLDA N RLA+LDLKLDSKPGYA TFAL LAS S  N   T  PH
Subjt:  RKVPSPRELVSHYESQGLSSEDASMKVIEDLQNALFRVISSGRARKDKLLLDTSKKLDAANHRLAILDLKLDSKPGYAHTFALALASASAFNAMATATPH

Query:  I------LWLSI
        +      +W S+
Subjt:  I------LWLSI

A0A1S4DV46 uncharacterized protein LOC1034875373.0e-3266.37Show/hide
Query:  RRKVPSPRELVSHYESQGLSSEDASMKVIEDLQNALFRVISSGRARKDKLLLDTSKKLDAANHRLAILDLKLDSKPGYAHTFALALASASAFNAMATATP
        RRK PSP+EL+SHYESQG +S DAS+KVI+DLQNALF++ISSGR +KDKLLL+TS+K+DA N RLA+LDLKLDSKPGYA TFAL LAS S  N + T  P
Subjt:  RRKVPSPRELVSHYESQGLSSEDASMKVIEDLQNALFRVISSGRARKDKLLLDTSKKLDAANHRLAILDLKLDSKPGYAHTFALALASASAFNAMATATP

Query:  HI------LWLSI
        H+      +W S+
Subjt:  HI------LWLSI

A0A5A7VAF7 Putative ribosomal-like protein3.0e-3266.37Show/hide
Query:  RRKVPSPRELVSHYESQGLSSEDASMKVIEDLQNALFRVISSGRARKDKLLLDTSKKLDAANHRLAILDLKLDSKPGYAHTFALALASASAFNAMATATP
        RRK PSP+EL+SHYESQG +S DAS+KVI+DLQNALF++ISSGR +KDKLLL+TS+K+DA N RLA+LDLKLDSKPGYA TFAL LAS S  N + T  P
Subjt:  RRKVPSPRELVSHYESQGLSSEDASMKVIEDLQNALFRVISSGRARKDKLLLDTSKKLDAANHRLAILDLKLDSKPGYAHTFALALASASAFNAMATATP

Query:  HI------LWLSI
        H+      +W S+
Subjt:  HI------LWLSI

A0A6J1GTX5 uncharacterized protein LOC1114575041.1e-3469.49Show/hide
Query:  SGRAQRRKVPSPRELVSHYESQGLSSEDASMKVIEDLQNALFRVISSGRARKDKLLLDTSKKLDAANHRLAILDLKLDSKPGYAHTFALALASASAFNAM
        SG AQRRK+PSP+ELVSHYESQGL+S DAS+KVIEDLQNAL R+ISSGR +KDKLL+DTS+K+DA N RLAILDLKLDSKPGYA TFAL LAS S  N +
Subjt:  SGRAQRRKVPSPRELVSHYESQGLSSEDASMKVIEDLQNALFRVISSGRARKDKLLLDTSKKLDAANHRLAILDLKLDSKPGYAHTFALALASASAFNAM

Query:  ATATPHI------LWLSI
            PH+      +W S+
Subjt:  ATATPHI------LWLSI

A0A6J1J075 uncharacterized protein LOC1114800225.5e-3464.06Show/hide
Query:  QSMGDSNSVGSGRAQRRKVPSPRELVSHYESQGLSSEDASMKVIEDLQNALFRVISSGRARKDKLLLDTSKKLDAANHRLAILDLKLDSKPGYAHTFALA
        Q    +  + S  AQRRK+PSP+ELVSHYESQGL+S DAS+KVIEDLQNAL R+ISSGR +KDKLL+DTS+K+DA N RLAILDLKLDSKPGYA TFAL 
Subjt:  QSMGDSNSVGSGRAQRRKVPSPRELVSHYESQGLSSEDASMKVIEDLQNALFRVISSGRARKDKLLLDTSKKLDAANHRLAILDLKLDSKPGYAHTFALA

Query:  LASASAFNAMATATPHI------LWLSI
        LAS S  N +    PH+      +W S+
Subjt:  LASASAFNAMATATPHI------LWLSI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G16790.1 ribosomal protein-related3.9e-2452.34Show/hide
Query:  RAQRRKVPSPRELVSHYESQGLSSEDASMKVIEDLQNALFRVISSGR--ARKDKLLLDTSKKLDAANHRLAILDLKLDSKPGYAHTFALALASASAFNAM
        + + +K P+P EL+SHY+ +GL   +AS+KVIEDLQNAL RV+SS R  + KDKL+ D ++K+DA N RLA++D KL++KPGY  TFAL LAS +  N +
Subjt:  RAQRRKVPSPRELVSHYESQGLSSEDASMKVIEDLQNALFRVISSGR--ARKDKLLLDTSKKLDAANHRLAILDLKLDSKPGYAHTFALALASASAFNAM

Query:  ATATPHI
        +   PH+
Subjt:  ATATPHI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAATCAATCAATGGGGGATTCGAATTCGGTTGGCAGTGGAAGAGCGCAAAGAAGGAAGGTTCCTTCCCCTCGGGAGTTGGTATCCCACTACGAATCTCAGGGCCTTAG
TTCTGAGGATGCTTCAATGAAGGTGATCGAAGACCTTCAGAACGCGCTGTTTAGGGTCATCTCCTCTGGCAGGGCCAGAAAGGACAAGCTCCTCCTCGACACCTCCAAGA
AGCTCGATGCCGCCAACCACCGCCTCGCCATTCTCGACCTCAAGCTTGACTCCAAGCCCGGCTATGCCCACACTTTCGCCCTCGCCCTCGCCTCCGCCTCCGCTTTCAAC
GCCATGGCAACTGCCACGCCCCACATTCTCTGGCTTTCAATTTTAGTAGTGGAGAGGAATTTAGTAGTGTTTGGTGTTTGGAGGGTTTGCAGGATTAAGAACCTCCAAAT
TTTAAATTCTTCCCTGAGTATTGTTATTAGAAATTTGAAATGTGTGTCATTCCTTGCAAGTTTACTAACTACTACTGATGAGTGA
mRNA sequenceShow/hide mRNA sequence
ATGAATCAATCAATGGGGGATTCGAATTCGGTTGGCAGTGGAAGAGCGCAAAGAAGGAAGGTTCCTTCCCCTCGGGAGTTGGTATCCCACTACGAATCTCAGGGCCTTAG
TTCTGAGGATGCTTCAATGAAGGTGATCGAAGACCTTCAGAACGCGCTGTTTAGGGTCATCTCCTCTGGCAGGGCCAGAAAGGACAAGCTCCTCCTCGACACCTCCAAGA
AGCTCGATGCCGCCAACCACCGCCTCGCCATTCTCGACCTCAAGCTTGACTCCAAGCCCGGCTATGCCCACACTTTCGCCCTCGCCCTCGCCTCCGCCTCCGCTTTCAAC
GCCATGGCAACTGCCACGCCCCACATTCTCTGGCTTTCAATTTTAGTAGTGGAGAGGAATTTAGTAGTGTTTGGTGTTTGGAGGGTTTGCAGGATTAAGAACCTCCAAAT
TTTAAATTCTTCCCTGAGTATTGTTATTAGAAATTTGAAATGTGTGTCATTCCTTGCAAGTTTACTAACTACTACTGATGAGTGA
Protein sequenceShow/hide protein sequence
MNQSMGDSNSVGSGRAQRRKVPSPRELVSHYESQGLSSEDASMKVIEDLQNALFRVISSGRARKDKLLLDTSKKLDAANHRLAILDLKLDSKPGYAHTFALALASASAFN
AMATATPHILWLSILVVERNLVVFGVWRVCRIKNLQILNSSLSIVIRNLKCVSFLASLLTTTDE