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Sed0001637 (gene) of Chayote v1 genome

Gene IDSed0001637
OrganismSechium edule (Chayote v1)
DescriptionBHLH domain-containing protein
Genome locationLG14:6255720..6256339
RNA-Seq ExpressionSed0001637
SyntenySed0001637
Gene Ontology termsGO:0005634 - nucleus (cellular component)
GO:0046983 - protein dimerization activity (molecular function)
InterPro domainsIPR011598 - Myc-type, basic helix-loop-helix (bHLH) domain
IPR036638 - Helix-loop-helix DNA-binding domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6595412.1 Transcription factor basic helix-loop-helix 140, partial [Cucurbita argyrosperma subsp. sororia]7.8e-5167.91Show/hide
Query:  CSSSAG---TREPEKEKAKKNTGGGSSGGKRSKGAVKLSTDPQSVAARERRHRISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFLKTQILLHQTIINF
        C SS+G   T    KEK KKN+  GS GGKRSKG VKLSTDPQSVAARERRHRISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFLKTQI LHQT+INF
Subjt:  CSSSAG---TREPEKEKAKKNTGGGSSGGKRSKGAVKLSTDPQSVAARERRHRISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFLKTQILLHQTIINF

Query:  VDFDHSSNSAAASAAADVDYSGISLDQIAAA----GEVNHFIYPENDVVKMEDYPNQV------NYCFPSEQDQFLCSSYDASYMNF
        VD+D SSNS AA+AA +    G   DQIA       + N F+Y +NDVVKME+ PN +      N  FPS QDQ++CSSYD  YMNF
Subjt:  VDFDHSSNSAAASAAADVDYSGISLDQIAAA----GEVNHFIYPENDVVKMEDYPNQV------NYCFPSEQDQFLCSSYDASYMNF

KAG6603572.1 Transcription factor basic helix-loop-helix 140, partial [Cucurbita argyrosperma subsp. sororia]1.5e-4968.65Show/hide
Query:  CSSSAG--TREPEKEKAKKNTGG---GSSGGKRSKGAVKLSTDPQSVAARERRHRISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFLKTQILLHQTII
        C SS+G    E  KEK KKN GG   GS GGKR+KG +KLSTDPQSVAARERRHRISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFLKTQI LHQT+I
Subjt:  CSSSAG--TREPEKEKAKKNTGG---GSSGGKRSKGAVKLSTDPQSVAARERRHRISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFLKTQILLHQTII

Query:  NFVDFD--HSSNSAAASAAADVDYSGISLDQIAAAGEVNHFIYPENDVVKMED----YPNQVNYCFPSEQDQFLCSSYDASYMNF
        NFVD+D   SS+SAAA+AAA+   SGI +      G++N F++PEN+VVKME+    + +  N  FPS QDQF+CSSYDA YMNF
Subjt:  NFVDFD--HSSNSAAASAAADVDYSGISLDQIAAAGEVNHFIYPENDVVKMED----YPNQVNYCFPSEQDQFLCSSYDASYMNF

XP_022931869.1 transcription factor bHLH140 [Cucurbita moschata]7.8e-5167.91Show/hide
Query:  CSSSAG---TREPEKEKAKKNTGGGSSGGKRSKGAVKLSTDPQSVAARERRHRISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFLKTQILLHQTIINF
        C SS+G   T    KEK KKN+  GS GGKRSKG VKLSTDPQSVAARERRHRISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFLKTQI LHQT+INF
Subjt:  CSSSAG---TREPEKEKAKKNTGGGSSGGKRSKGAVKLSTDPQSVAARERRHRISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFLKTQILLHQTIINF

Query:  VDFDHSSNSAAASAAADVDYSGISLDQIAAA----GEVNHFIYPENDVVKMEDYPNQV------NYCFPSEQDQFLCSSYDASYMNF
        VD+D SSNS AA+AA +    G   DQIA       + N F+Y +NDVVKME+ PN +      N  FPS QDQ++CSSYD  YMNF
Subjt:  VDFDHSSNSAAASAAADVDYSGISLDQIAAA----GEVNHFIYPENDVVKMEDYPNQV------NYCFPSEQDQFLCSSYDASYMNF

XP_022966526.1 transcription factor LAX PANICLE 1-like [Cucurbita maxima]2.7e-5168.45Show/hide
Query:  CSSSAG---TREPEKEKAKKNTGGGSSGGKRSKGAVKLSTDPQSVAARERRHRISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFLKTQILLHQTIINF
        C SS+G   T    KEK KKN+  GS GGKRSKG VKLSTDPQSVAARERRHRISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFLKTQI LHQT+INF
Subjt:  CSSSAG---TREPEKEKAKKNTGGGSSGGKRSKGAVKLSTDPQSVAARERRHRISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFLKTQILLHQTIINF

Query:  VDFDHSSNSAAASAAADVDYSGISLDQIAAA----GEVNHFIYPENDVVKMEDYPNQV------NYCFPSEQDQFLCSSYDASYMNF
        VD+D SSNS AA  AA V+  G   +QIA       + N F+Y +NDVVKME+ PN +      N  FPS QDQ++CSSYDA YMNF
Subjt:  VDFDHSSNSAAASAAADVDYSGISLDQIAAA----GEVNHFIYPENDVVKMEDYPNQV------NYCFPSEQDQFLCSSYDASYMNF

XP_023518081.1 transcription factor bHLH140-like [Cucurbita pepo subsp. pepo]8.7e-5067.91Show/hide
Query:  CSSSAG---TREPEKEKAKKNTGGGSSGGKRSKGAVKLSTDPQSVAARERRHRISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFLKTQILLHQTIINF
        C SS+G   T    +EK KKN   GS GGKRSKG VKLSTDPQSVAARERRHRISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFLKTQI LHQT+INF
Subjt:  CSSSAG---TREPEKEKAKKNTGGGSSGGKRSKGAVKLSTDPQSVAARERRHRISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFLKTQILLHQTIINF

Query:  VDFDHSSNSAAASAAADVDYSGISLDQIAAA----GEVNHFIYPENDVVKMEDYPNQVNYC------FPSEQDQFLCSSYDASYMNF
        VD+D SSNS  A+AAA     G  LDQIA         N F+Y +NDVVKME+ PN +         FPS QDQ++CSSYDA YMNF
Subjt:  VDFDHSSNSAAASAAADVDYSGISLDQIAAA----GEVNHFIYPENDVVKMEDYPNQVNYC------FPSEQDQFLCSSYDASYMNF

TrEMBL top hitse value%identityAlignment
A0A0A0KXM0 BHLH domain-containing protein2.8e-4665.76Show/hide
Query:  SSSAGTREPEKEKAKKNTGGGSSGGKRSKGAVKLSTDPQSVAARERRHRISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFLKTQILLHQTIINFVDFD
        SSS G     KEK KKN       GKRSKG VKLSTDPQSVAARERRHRISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFLKTQI LHQT+INFVD+D
Subjt:  SSSAGTREPEKEKAKKNTGGGSSGGKRSKGAVKLSTDPQSVAARERRHRISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFLKTQILLHQTIINFVDFD

Query:  HSSNSAAASAAADVDYSGISLDQIAAA--GEVNHFIYPENDVVKME--------DYPNQVNYCFPSE-QDQFLCSSYDASYMNF
          SNS+AA +AA    SG   +QIA+     +N+ +YP+NDVVKME        D  N  N  FPS+ QDQF+ SSYD  Y+NF
Subjt:  HSSNSAAASAAADVDYSGISLDQIAAA--GEVNHFIYPENDVVKME--------DYPNQVNYCFPSE-QDQFLCSSYDASYMNF

A0A5A7T6E1 HLH domain-containing protein3.1e-4565.59Show/hide
Query:  CSSSAGTREPEKEKAKKNTGGGSSG-GKRSKGAVKLSTDPQSVAARERRHRISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFLKTQILLHQTIINFVD
        C SS+G     KEK KKN      G GKRSKG VKLSTDPQSVAARERRHRISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFLKTQI LHQT+INFVD
Subjt:  CSSSAGTREPEKEKAKKNTGGGSSG-GKRSKGAVKLSTDPQSVAARERRHRISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFLKTQILLHQTIINFVD

Query:  FDHSSNSAAASAAADVDYSGISLDQIAAA--GEVNHFIYPENDVVKME--------DYPNQVNYCFPSE-QDQFLCSSYDASYMNF
        +D  SNS+AA +AA    SG   +QIA+     +N+ +YP+NDVVKME        D  N  N  FPS+ QDQF+ SSYD  Y+NF
Subjt:  FDHSSNSAAASAAADVDYSGISLDQIAAA--GEVNHFIYPENDVVKME--------DYPNQVNYCFPSE-QDQFLCSSYDASYMNF

A0A6J1EVF6 transcription factor bHLH1403.8e-5167.91Show/hide
Query:  CSSSAG---TREPEKEKAKKNTGGGSSGGKRSKGAVKLSTDPQSVAARERRHRISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFLKTQILLHQTIINF
        C SS+G   T    KEK KKN+  GS GGKRSKG VKLSTDPQSVAARERRHRISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFLKTQI LHQT+INF
Subjt:  CSSSAG---TREPEKEKAKKNTGGGSSGGKRSKGAVKLSTDPQSVAARERRHRISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFLKTQILLHQTIINF

Query:  VDFDHSSNSAAASAAADVDYSGISLDQIAAA----GEVNHFIYPENDVVKMEDYPNQV------NYCFPSEQDQFLCSSYDASYMNF
        VD+D SSNS AA+AA +    G   DQIA       + N F+Y +NDVVKME+ PN +      N  FPS QDQ++CSSYD  YMNF
Subjt:  VDFDHSSNSAAASAAADVDYSGISLDQIAAA----GEVNHFIYPENDVVKMEDYPNQV------NYCFPSEQDQFLCSSYDASYMNF

A0A6J1HPK4 transcription factor LAX PANICLE 1-like1.3e-5168.45Show/hide
Query:  CSSSAG---TREPEKEKAKKNTGGGSSGGKRSKGAVKLSTDPQSVAARERRHRISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFLKTQILLHQTIINF
        C SS+G   T    KEK KKN+  GS GGKRSKG VKLSTDPQSVAARERRHRISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFLKTQI LHQT+INF
Subjt:  CSSSAG---TREPEKEKAKKNTGGGSSGGKRSKGAVKLSTDPQSVAARERRHRISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFLKTQILLHQTIINF

Query:  VDFDHSSNSAAASAAADVDYSGISLDQIAAA----GEVNHFIYPENDVVKMEDYPNQV------NYCFPSEQDQFLCSSYDASYMNF
        VD+D SSNS AA  AA V+  G   +QIA       + N F+Y +NDVVKME+ PN +      N  FPS QDQ++CSSYDA YMNF
Subjt:  VDFDHSSNSAAASAAADVDYSGISLDQIAAA----GEVNHFIYPENDVVKMEDYPNQV------NYCFPSEQDQFLCSSYDASYMNF

A0A6J1IKQ9 transcription factor LAX PANICLE 11.6e-4968.33Show/hide
Query:  CSSSAG--TREPEKEKAKKNTGGGSSGGKRSKGAVKLSTDPQSVAARERRHRISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFLKTQILLHQTIINFV
        C SS+G    E  +EK KKN GGGS GGKRSKG +KLSTDPQSVAARERRHRISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFLKTQI LHQT+INFV
Subjt:  CSSSAG--TREPEKEKAKKNTGGGSSGGKRSKGAVKLSTDPQSVAARERRHRISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFLKTQILLHQTIINFV

Query:  DFDHSSNSAAASAAADVDYSGISLDQIAAAGEVNHFIYPENDVVKMED----YPNQVNYCFPSEQDQFLCSSYDASYMNF
        D+D  S+S+AA+AA +   SGI +      G++N F++ EN+VVKME+    + +  N  FPS QDQF+CSSYDA YMNF
Subjt:  DFDHSSNSAAASAAADVDYSGISLDQIAAAGEVNHFIYPENDVVKMED----YPNQVNYCFPSEQDQFLCSSYDASYMNF

SwissProt top hitse value%identityAlignment
Q7XAQ6 Transcription factor LAX PANICLE 16.5e-2462.89Show/hide
Query:  GGSSGGKRSKGAVKLSTDPQSVAARERRHRISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFLKTQILLHQ-TIINFVDFDHSSNSAAASAAADVD
        G   GG R +   KLSTDPQSVAARERRHRISDRF++L+SLVPGG+KMDTVSML++AIHYVKFLK Q+ LHQ  ++   +    ++ AAA +AAD D
Subjt:  GGSSGGKRSKGAVKLSTDPQSVAARERRHRISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFLKTQILLHQ-TIINFVDFDHSSNSAAASAAADVD

Q9FHA7 Transcription factor HEC11.2e-1778.57Show/hide
Query:  VKLSTDPQSVAARERRHRISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFLKTQI
        V++S DPQSVAAR RR RIS+R +ILQ LVPGGTKMDT SMLDEAIHYVKFLK Q+
Subjt:  VKLSTDPQSVAARERRHRISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFLKTQI

Q9LXD8 Transcription factor HEC31.3e-1671.88Show/hide
Query:  KRSKGAVKLSTDPQSVAARERRHRISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFLKTQILL
        K  +  V++S DPQSVAAR RR RIS+R +ILQ LVPGGTKMDT SMLDEAI YVKFLK QI L
Subjt:  KRSKGAVKLSTDPQSVAARERRHRISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFLKTQILL

Q9M041 Transcription factor bHLH1401.2e-2259.43Show/hide
Query:  SSSAGTREPEKEKAKKNTGGGSSGGKRSKGAVKLSTDPQSVAARERRHRISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFLKTQILLHQTIINFVDFD
        SS+  +      + K  TG      KRS+    LSTDPQSVAAR+RRHRISDRFKILQS+VPGG KMDTVSMLDEAI YVKFLK QI  HQ ++ F++ D
Subjt:  SSSAGTREPEKEKAKKNTGGGSSGGKRSKGAVKLSTDPQSVAARERRHRISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFLKTQILLHQTIINFVDFD

Query:  HSSNSA
        H + S+
Subjt:  HSSNSA

Q9SND4 Transcription factor HEC21.2e-1778.57Show/hide
Query:  VKLSTDPQSVAARERRHRISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFLKTQI
        V++S DPQSVAAR RR RIS+R +ILQ LVPGGTKMDT SMLDEAIHYVKFLK Q+
Subjt:  VKLSTDPQSVAARERRHRISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFLKTQI

Arabidopsis top hitse value%identityAlignment
AT3G21330.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein7.9e-1751.76Show/hide
Query:  KRSKGAVKLSTDPQSVAARERRHRISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFLKTQILLHQTIINFVDFDHSSNSAAASA
        K  +  VK+STDPQ+VAAR+RR RIS++ ++LQ+LVPGGTKMDT SMLDEA +Y+KFL+ Q+   + +   +D  + S S+A ++
Subjt:  KRSKGAVKLSTDPQSVAARERRHRISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFLKTQILLHQTIINFVDFDHSSNSAAASA

AT3G50330.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein8.4e-1978.57Show/hide
Query:  VKLSTDPQSVAARERRHRISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFLKTQI
        V++S DPQSVAAR RR RIS+R +ILQ LVPGGTKMDT SMLDEAIHYVKFLK Q+
Subjt:  VKLSTDPQSVAARERRHRISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFLKTQI

AT5G01310.1 APRATAXIN-like8.7e-2459.43Show/hide
Query:  SSSAGTREPEKEKAKKNTGGGSSGGKRSKGAVKLSTDPQSVAARERRHRISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFLKTQILLHQTIINFVDFD
        SS+  +      + K  TG      KRS+    LSTDPQSVAAR+RRHRISDRFKILQS+VPGG KMDTVSMLDEAI YVKFLK QI  HQ ++ F++ D
Subjt:  SSSAGTREPEKEKAKKNTGGGSSGGKRSKGAVKLSTDPQSVAARERRHRISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFLKTQILLHQTIINFVDFD

Query:  HSSNSA
        H + S+
Subjt:  HSSNSA

AT5G09750.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein9.3e-1871.88Show/hide
Query:  KRSKGAVKLSTDPQSVAARERRHRISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFLKTQILL
        K  +  V++S DPQSVAAR RR RIS+R +ILQ LVPGGTKMDT SMLDEAI YVKFLK QI L
Subjt:  KRSKGAVKLSTDPQSVAARERRHRISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFLKTQILL

AT5G67060.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein8.4e-1978.57Show/hide
Query:  VKLSTDPQSVAARERRHRISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFLKTQI
        V++S DPQSVAAR RR RIS+R +ILQ LVPGGTKMDT SMLDEAIHYVKFLK Q+
Subjt:  VKLSTDPQSVAARERRHRISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFLKTQI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGCAGCTCATCCGCCGGCACCCGAGAACCCGAAAAGGAAAAGGCGAAAAAGAACACGGGTGGCGGCAGCAGCGGAGGGAAGAGGAGCAAAGGCGCGGTGAAGCTGTC
GACGGACCCGCAAAGCGTGGCGGCGAGAGAACGACGACACCGGATCAGCGACCGGTTCAAGATTTTGCAGAGCCTGGTTCCCGGGGGCACCAAAATGGACACTGTCTCCA
TGCTGGACGAAGCAATTCATTACGTCAAGTTCTTGAAAACCCAGATTTTGCTTCATCAAACCATCATCAATTTCGTTGACTTTGACCATTCTTCCAATTCCGCCGCCGCA
TCTGCCGCCGCCGACGTGGATTATTCCGGCATCTCTCTCGACCAAATTGCCGCCGCCGGCGAGGTGAATCATTTTATTTACCCTGAAAACGACGTCGTTAAAATGGAGGA
TTATCCCAACCAAGTTAATTATTGCTTTCCTTCTGAACAAGACCAATTCTTGTGTTCTTCTTATGATGCTAGTTACATGAATTTCTAG
mRNA sequenceShow/hide mRNA sequence
CATGCACCAAAATTTCAATCTAACTTTGTGTTCTTCAAGTGGGTGTGTTCCAAAATAATGGACTACACTTTCCCGGAGAGCAACCCTAGCTCATGTGCAGCTCATCCGCC
GGCACCCGAGAACCCGAAAAGGAAAAGGCGAAAAAGAACACGGGTGGCGGCAGCAGCGGAGGGAAGAGGAGCAAAGGCGCGGTGAAGCTGTCGACGGACCCGCAAAGCGT
GGCGGCGAGAGAACGACGACACCGGATCAGCGACCGGTTCAAGATTTTGCAGAGCCTGGTTCCCGGGGGCACCAAAATGGACACTGTCTCCATGCTGGACGAAGCAATTC
ATTACGTCAAGTTCTTGAAAACCCAGATTTTGCTTCATCAAACCATCATCAATTTCGTTGACTTTGACCATTCTTCCAATTCCGCCGCCGCATCTGCCGCCGCCGACGTG
GATTATTCCGGCATCTCTCTCGACCAAATTGCCGCCGCCGGCGAGGTGAATCATTTTATTTACCCTGAAAACGACGTCGTTAAAATGGAGGATTATCCCAACCAAGTTAA
TTATTGCTTTCCTTCTGAACAAGACCAATTCTTGTGTTCTTCTTATGATGCTAGTTACATGAATTTCTAG
Protein sequenceShow/hide protein sequence
MCSSSAGTREPEKEKAKKNTGGGSSGGKRSKGAVKLSTDPQSVAARERRHRISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFLKTQILLHQTIINFVDFDHSSNSAAA
SAAADVDYSGISLDQIAAAGEVNHFIYPENDVVKMEDYPNQVNYCFPSEQDQFLCSSYDASYMNF