; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Sed0001840 (gene) of Chayote v1 genome

Gene IDSed0001840
OrganismSechium edule (Chayote v1)
Descriptionreplication protein A 70 kDa DNA-binding subunit A-like
Genome locationLG09:4228511..4229207
RNA-Seq ExpressionSed0001840
SyntenySed0001840
Gene Ontology termsNA
InterPro domainsIPR012340 - Nucleic acid-binding, OB-fold
IPR013955 - Replication factor A, C-terminal


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG5512925.1 hypothetical protein RHGRI_038656 [Rhododendron griersonianum]2.0e-1530.66Show/hide
Query:  FCSFIGRIVRIQNKSSLWFEKCTSCHGRVYPIGNAITSSCSICNNESISFVQRFMLKMIVSDGDSEAYITMFDATEHLTGCNAVEYFNNLSQVQNKKSSE
        +C F G I+ I+N   +W+E C  CH +V+ I     + C  C++ +I    R+M+K+ V DG  +  +T+FDA + L GC   E+   L+  +  ++++
Subjt:  FCSFIGRIVRIQNKSSLWFEKCTSCHGRVYPIGNAITSSCSICNNESISFVQRFMLKMIVSDGDSEAYITMFDATEHLTGCNAVEYFNNLSQVQNKKSSE

Query:  YYQNLVLADDKKYYFLVRLNKDRERDRSRRQIVVQEI
        +Y++L+    ++Y F  R N   ++DR   +++VQ+I
Subjt:  YYQNLVLADDKKYYFLVRLNKDRERDRSRRQIVVQEI

XP_016476407.1 PREDICTED: replication protein A 70 kDa DNA-binding subunit B-like [Nicotiana tabacum]7.9e-1734.53Show/hide
Query:  EEFCSFIGRIVRIQNKSSLWFEKCTSCHGRVYPIGNAITSSCSICNNESISFVQRFMLKMIVSDGDSEAYITMFDATEHLTGCNAVEYFNNLSQVQNKKS
        + +  F  RI  I NK   W+  C  C+ +V  I N   + C  C  E++ + +R++LK+ V D     Y+T+F++T +L GC+   Y  ++S  QNK+ 
Subjt:  EEFCSFIGRIVRIQNKSSLWFEKCTSCHGRVYPIGNAITSSCSICNNESISFVQRFMLKMIVSDGDSEAYITMFDATEHLTGCNAVEYFNNLSQVQNKKS

Query:  SEYYQNLVLADDKKYYFLVRLNKDRERDRSRRQIVVQEI
        S++Y+ LVL+ +KK+ FLV+++     DR  R+ +V+EI
Subjt:  SEYYQNLVLADDKKYYFLVRLNKDRERDRSRRQIVVQEI

XP_016485940.1 PREDICTED: replication protein A 70 kDa DNA-binding subunit B-like [Nicotiana tabacum]2.0e-1530.87Show/hide
Query:  EEFCSFIGRIVRIQNKSSLWFEKCTSCHGRVYPIGNAITSSCSICNNESISFVQRFMLKMIVSDGDSEAYITMFDATEHLTGCNAVEYFNNLSQVQNKKS
        + +  F  RI  I NK   W+  C  C+ +V  I N   + C  C  E++ + +R++LK+ V D     Y+T+F++T +L GC+   Y  ++S  Q K+ 
Subjt:  EEFCSFIGRIVRIQNKSSLWFEKCTSCHGRVYPIGNAITSSCSICNNESISFVQRFMLKMIVSDGDSEAYITMFDATEHLTGCNAVEYFNNLSQVQNKKS

Query:  SEYYQNLVLADDKKYYFLVRLNKDRERDRSRRQIVVQEICTVNLMAEKK
         ++Y+ LVL+ +K++ FLV+++     DR  R+ + +EI  V  + + K
Subjt:  SEYYQNLVLADDKKYYFLVRLNKDRERDRSRRQIVVQEICTVNLMAEKK

XP_016500091.1 PREDICTED: replication protein A 70 kDa DNA-binding subunit A-like [Nicotiana tabacum]2.0e-1530.23Show/hide
Query:  EEFCSFIGRIVRIQNKSSLWFEKCTSCHGRVYPIGNAITSSCSICNNESISFVQRFMLKMIVSDGDSEAYITMFDATEHLTGCNAVEYFNNLSQVQNKKS
        + +  F  RI  I NK   W+  C  C+ +V  I N   + C  C  E++ + ++++LK+ V D     Y+T+F++T +L GC+   Y  ++S  Q K+ 
Subjt:  EEFCSFIGRIVRIQNKSSLWFEKCTSCHGRVYPIGNAITSSCSICNNESISFVQRFMLKMIVSDGDSEAYITMFDATEHLTGCNAVEYFNNLSQVQNKKS

Query:  SEYYQNLVLADDKKYYFLVRLNKDRERDRSRRQIVVQEICTVNLMA------EKKFSLNKDKGKHVLEELEN
        S++Y+ LVL+ +K++ FLV+++     DR  R+ + +EI  V  +A      E +      K K V E++ N
Subjt:  SEYYQNLVLADDKKYYFLVRLNKDRERDRSRRQIVVQEICTVNLMA------EKKFSLNKDKGKHVLEELEN

XP_020242959.1 replication protein A 70 kDa DNA-binding subunit B-like [Asparagus officinalis]4.6e-1737.23Show/hide
Query:  FCSFIGRIVRIQNKSSLWFEKCTSCHGRVYPIGNAITSSCSICNNESISFVQRFMLKMIVSDGDSEAYITMFDATEHLTGCNAVEYFNNLSQVQNKKSSE
        FCSF+ +I+ I N    +F  CT C   V+ I N  T++C+ C N +  +  R+ L++ V+DG   AY+T+FD  E L GC A+ Y     ++   +SSE
Subjt:  FCSFIGRIVRIQNKSSLWFEKCTSCHGRVYPIGNAITSSCSICNNESISFVQRFMLKMIVSDGDSEAYITMFDATEHLTGCNAVEYFNNLSQVQNKKSSE

Query:  YYQNLVLADDKKYYFLVRLNKDRERDRSRRQIVVQEI
         YQ +    +K+Y FLV++N+  E +R  R I+ QE+
Subjt:  YYQNLVLADDKKYYFLVRLNKDRERDRSRRQIVVQEI

TrEMBL top hitse value%identityAlignment
A0A1J6IT36 Rep_fac-A_C domain-containing protein1.4e-1432.54Show/hide
Query:  EEFCSFIGRIVRIQNKSSLWFEKCTSCHGRVYPIGNAITSSCSICNNESISFVQRFMLKMIVSDGDSEAYITMFDATEHLTGCNAVEYFNNLSQVQNKKS
        E +  F  +I  I NK   W+  C  C  +V  I +  T++C  CN E++ +  R+ L++ VS G+    + +FDA E+L GC+  EY  ++     K+ 
Subjt:  EEFCSFIGRIVRIQNKSSLWFEKCTSCHGRVYPIGNAITSSCSICNNESISFVQRFMLKMIVSDGDSEAYITMFDATEHLTGCNAVEYFNNLSQVQNKKS

Query:  SEYYQNLVLADDKKYYFLVRLNKDRERDRSRRQIVVQEICTVNLMAEKKFSLNKDKGKHVLEELENANN
        S YY+ LVL+ DK++ FLV++  D +   S R ++ QEI     +A  K  L++DK   +  +    NN
Subjt:  SEYYQNLVLADDKKYYFLVRLNKDRERDRSRRQIVVQEICTVNLMAEKKFSLNKDKGKHVLEELENANN

A0A1S4AI89 replication protein A 70 kDa DNA-binding subunit B-like3.8e-1734.53Show/hide
Query:  EEFCSFIGRIVRIQNKSSLWFEKCTSCHGRVYPIGNAITSSCSICNNESISFVQRFMLKMIVSDGDSEAYITMFDATEHLTGCNAVEYFNNLSQVQNKKS
        + +  F  RI  I NK   W+  C  C+ +V  I N   + C  C  E++ + +R++LK+ V D     Y+T+F++T +L GC+   Y  ++S  QNK+ 
Subjt:  EEFCSFIGRIVRIQNKSSLWFEKCTSCHGRVYPIGNAITSSCSICNNESISFVQRFMLKMIVSDGDSEAYITMFDATEHLTGCNAVEYFNNLSQVQNKKS

Query:  SEYYQNLVLADDKKYYFLVRLNKDRERDRSRRQIVVQEI
        S++Y+ LVL+ +KK+ FLV+++     DR  R+ +V+EI
Subjt:  SEYYQNLVLADDKKYYFLVRLNKDRERDRSRRQIVVQEI

A0A1S4BAI4 replication protein A 70 kDa DNA-binding subunit B-like9.4e-1630.87Show/hide
Query:  EEFCSFIGRIVRIQNKSSLWFEKCTSCHGRVYPIGNAITSSCSICNNESISFVQRFMLKMIVSDGDSEAYITMFDATEHLTGCNAVEYFNNLSQVQNKKS
        + +  F  RI  I NK   W+  C  C+ +V  I N   + C  C  E++ + +R++LK+ V D     Y+T+F++T +L GC+   Y  ++S  Q K+ 
Subjt:  EEFCSFIGRIVRIQNKSSLWFEKCTSCHGRVYPIGNAITSSCSICNNESISFVQRFMLKMIVSDGDSEAYITMFDATEHLTGCNAVEYFNNLSQVQNKKS

Query:  SEYYQNLVLADDKKYYFLVRLNKDRERDRSRRQIVVQEICTVNLMAEKK
         ++Y+ LVL+ +K++ FLV+++     DR  R+ + +EI  V  + + K
Subjt:  SEYYQNLVLADDKKYYFLVRLNKDRERDRSRRQIVVQEICTVNLMAEKK

A0A1S4CG46 replication protein A 70 kDa DNA-binding subunit A-like9.4e-1630.23Show/hide
Query:  EEFCSFIGRIVRIQNKSSLWFEKCTSCHGRVYPIGNAITSSCSICNNESISFVQRFMLKMIVSDGDSEAYITMFDATEHLTGCNAVEYFNNLSQVQNKKS
        + +  F  RI  I NK   W+  C  C+ +V  I N   + C  C  E++ + ++++LK+ V D     Y+T+F++T +L GC+   Y  ++S  Q K+ 
Subjt:  EEFCSFIGRIVRIQNKSSLWFEKCTSCHGRVYPIGNAITSSCSICNNESISFVQRFMLKMIVSDGDSEAYITMFDATEHLTGCNAVEYFNNLSQVQNKKS

Query:  SEYYQNLVLADDKKYYFLVRLNKDRERDRSRRQIVVQEICTVNLMA------EKKFSLNKDKGKHVLEELEN
        S++Y+ LVL+ +K++ FLV+++     DR  R+ + +EI  V  +A      E +      K K V E++ N
Subjt:  SEYYQNLVLADDKKYYFLVRLNKDRERDRSRRQIVVQEICTVNLMA------EKKFSLNKDKGKHVLEELEN

A0A6A4KQR7 Rep_fac-A_C domain-containing protein (Fragment)8.0e-1529.2Show/hide
Query:  FCSFIGRIVRIQNKSSLWFEKCTSCHGRVYPIGNAITSSCSICNNESISFVQRFMLKMIVSDGDSEAYITMFDATEHLTGCNAVEYFNNLSQVQNKKSSE
        +C F G I+ I+N   +W+E C  CH +V+ I     + C  C + +I    R+M+K+ V DG  +  +T+FDA + L GC   E+   L+  +  ++++
Subjt:  FCSFIGRIVRIQNKSSLWFEKCTSCHGRVYPIGNAITSSCSICNNESISFVQRFMLKMIVSDGDSEAYITMFDATEHLTGCNAVEYFNNLSQVQNKKSSE

Query:  YYQNLVLADDKKYYFLVRLNKDRERDRSRRQIVVQEI
        +Y++L+    ++Y F  + N   ++D+   +++VQ+I
Subjt:  YYQNLVLADDKKYYFLVRLNKDRERDRSRRQIVVQEI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGTCTTCTGAAGTGTGTCTAAATGATATTATTTCGGGAAAAGTGATAGAAGAATTTTGCAGTTTCATAGGAAGAATTGTGAGAATTCAAAATAAAAGTTCACTTTG
GTTCGAAAAGTGTACATCTTGCCATGGAAGAGTATATCCAATAGGAAATGCTATCACAAGTTCATGCTCAATATGTAATAATGAATCTATTTCATTCGTACAAAGATTCA
TGTTAAAAATGATAGTTTCAGATGGAGATTCAGAAGCCTACATTACCATGTTTGATGCTACTGAGCATTTAACAGGTTGTAATGCAGTTGAGTATTTCAATAATCTATCT
CAGGTTCAAAATAAGAAGAGTAGTGAATATTACCAAAACTTGGTTTTAGCCGATGACAAGAAATACTACTTTTTAGTTAGATTGAACAAGGATAGGGAAAGAGATAGATC
ACGCCGTCAAATTGTTGTTCAAGAGATATGCACAGTCAATTTAATGGCCGAAAAAAAGTTTTCTCTAAACAAAGATAAAGGAAAACATGTCTTAGAAGAGCTGGAGAACG
CCAATAATAATTAG
mRNA sequenceShow/hide mRNA sequence
ATGGAGTCTTCTGAAGTGTGTCTAAATGATATTATTTCGGGAAAAGTGATAGAAGAATTTTGCAGTTTCATAGGAAGAATTGTGAGAATTCAAAATAAAAGTTCACTTTG
GTTCGAAAAGTGTACATCTTGCCATGGAAGAGTATATCCAATAGGAAATGCTATCACAAGTTCATGCTCAATATGTAATAATGAATCTATTTCATTCGTACAAAGATTCA
TGTTAAAAATGATAGTTTCAGATGGAGATTCAGAAGCCTACATTACCATGTTTGATGCTACTGAGCATTTAACAGGTTGTAATGCAGTTGAGTATTTCAATAATCTATCT
CAGGTTCAAAATAAGAAGAGTAGTGAATATTACCAAAACTTGGTTTTAGCCGATGACAAGAAATACTACTTTTTAGTTAGATTGAACAAGGATAGGGAAAGAGATAGATC
ACGCCGTCAAATTGTTGTTCAAGAGATATGCACAGTCAATTTAATGGCCGAAAAAAAGTTTTCTCTAAACAAAGATAAAGGAAAACATGTCTTAGAAGAGCTGGAGAACG
CCAATAATAATTAG
Protein sequenceShow/hide protein sequence
MESSEVCLNDIISGKVIEEFCSFIGRIVRIQNKSSLWFEKCTSCHGRVYPIGNAITSSCSICNNESISFVQRFMLKMIVSDGDSEAYITMFDATEHLTGCNAVEYFNNLS
QVQNKKSSEYYQNLVLADDKKYYFLVRLNKDRERDRSRRQIVVQEICTVNLMAEKKFSLNKDKGKHVLEELENANNN