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Sed0001882 (gene) of Chayote v1 genome

Gene IDSed0001882
OrganismSechium edule (Chayote v1)
DescriptionCDGSH iron-sulfur domain-containing protein
Genome locationLG01:65835964..65837582
RNA-Seq ExpressionSed0001882
SyntenySed0001882
Gene Ontology termsGO:0010506 - regulation of autophagy (biological process)
GO:0005741 - mitochondrial outer membrane (cellular component)
GO:0046872 - metal ion binding (molecular function)
GO:0051537 - 2 iron, 2 sulfur cluster binding (molecular function)
InterPro domainsIPR018967 - Iron-binding zinc finger, CDGSH type
IPR042216 - MitoNEET, CDGSH iron-sulfur domain
IPR045131 - CDGSH iron-sulfur domain-containing protein 1/2


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF3947199.1 hypothetical protein CMV_026636 [Castanea mollissima]5.4e-3185.54Show/hide
Query:  GGVRRRRRLAAVVVRAE--GINPAIRKSEDKVVDSVIVSELSKPLTPYCRCWRSGTFPLCDGSHVKHNKATGDNVGPLLLKKQ
        GGV  + R  AVVVRAE  GINP IRKSEDKVVDSV+V+ELSKPLT YCRCWRSGTFPLCDGSHVKHNKATGDNVGPLLLKKQ
Subjt:  GGVRRRRRLAAVVVRAE--GINPAIRKSEDKVVDSVIVSELSKPLTPYCRCWRSGTFPLCDGSHVKHNKATGDNVGPLLLKKQ

KAF7147279.1 hypothetical protein RHSIM_Rhsim03G0172900 [Rhododendron simsii]5.4e-3172.28Show/hide
Query:  AVAANFNAGG-----------GVRRRRRLAAVVVRAEGINPAIRKSEDKVVDSVIVSELSKPLTPYCRCWRSGTFPLCDGSHVKHNKATGDNVGPLLLKK
        AV A F+ GG           G + R R AAVVVRAE INP +RKSE KVVDSV+V+ELSKPLT YCRCWRSGTFPLCDGSHVKHNKATGDNVGPLLLKK
Subjt:  AVAANFNAGG-----------GVRRRRRLAAVVVRAEGINPAIRKSEDKVVDSVIVSELSKPLTPYCRCWRSGTFPLCDGSHVKHNKATGDNVGPLLLKK

Query:  Q
        +
Subjt:  Q

KAG6605678.1 CDGSH iron-sulfur domain-containing protein NEET, partial [Cucurbita argyrosperma subsp. sororia]5.4e-3180Show/hide
Query:  ANFNAGGGVRRRRRLAAVVVRAEG---INPAIRKSEDKVVDSVIVSELSKPLTPYCRCWRSGTFPLCDGSHVKHNKATGDNVGPLLLKKQ
        +NF  GG  RRR     VVVRAEG   INPAIRKSEDKVVDSV+V++L+KPLTPYCRCWRS TFPLCDGSHVKHNKATGDNVGPLLLKKQ
Subjt:  ANFNAGGGVRRRRRLAAVVVRAEG---INPAIRKSEDKVVDSVIVSELSKPLTPYCRCWRSGTFPLCDGSHVKHNKATGDNVGPLLLKKQ

KAG7035586.1 CDGSH iron-sulfur domain-containing protein NEET [Cucurbita argyrosperma subsp. argyrosperma]5.4e-3173.08Show/hide
Query:  SSLSLIPLPQAAVAANFNAGGGVRRRRRLAAVVVRAEG---INPAIRKSEDKVVDSVIVSELSKPLTPYCRCWRSGTFPLCDGSHVKHNKATGDNVGPLL
        S+L   P P      NF  GG  RRR     VVVRAEG   INPAIRKSEDKVVDSV+V++L+KPLTPYCRCWRS TFPLCDGSHVKHNKATGDNVGPLL
Subjt:  SSLSLIPLPQAAVAANFNAGGGVRRRRRLAAVVVRAEG---INPAIRKSEDKVVDSVIVSELSKPLTPYCRCWRSGTFPLCDGSHVKHNKATGDNVGPLL

Query:  LKKQ
        LKKQ
Subjt:  LKKQ

OMO85937.1 hypothetical protein CCACVL1_09927 [Corchorus capsularis]3.1e-3172.82Show/hide
Query:  SSLSLIPLPQAAVAANFNAGGGVRRRRRLAAVVVRAEG--INPAIRKSEDKVVDSVIVSELSKPLTPYCRCWRSGTFPLCDGSHVKHNKATGDNVGPLLL
        S+  L   P  AV  +FNA    + RRR AAVVVRAEG  INP IRK+E+KVVDSV+V+EL+KPLT YCRCWRSGTFPLCDG+HVKHNKATGDNVGPLLL
Subjt:  SSLSLIPLPQAAVAANFNAGGGVRRRRRLAAVVVRAEG--INPAIRKSEDKVVDSVIVSELSKPLTPYCRCWRSGTFPLCDGSHVKHNKATGDNVGPLLL

Query:  KKQ
        KKQ
Subjt:  KKQ

TrEMBL top hitse value%identityAlignment
A0A0A0KL88 ZnF_CDGSH domain-containing protein5.8e-3174.07Show/hide
Query:  PISSLSLIPLPQAAVAANFNAGGGVRRRRRLAAVVVRAEG------INPAIRKSEDKVVDSVIVSELSKPLTPYCRCWRSGTFPLCDGSHVKHNKATGDN
        P SSLS  P     ++ NFN  G    RRR   VVVRAEG      INPAIRKSEDKVVDSV+V ELSKPLTPYCRCWRSGTFPLCDGSHVKHNKATGDN
Subjt:  PISSLSLIPLPQAAVAANFNAGGGVRRRRRLAAVVVRAEG------INPAIRKSEDKVVDSVIVSELSKPLTPYCRCWRSGTFPLCDGSHVKHNKATGDN

Query:  VGPLLLKK
        VGPLLLKK
Subjt:  VGPLLLKK

A0A1R3ITN5 ZnF_CDGSH domain-containing protein1.5e-3172.82Show/hide
Query:  SSLSLIPLPQAAVAANFNAGGGVRRRRRLAAVVVRAEG--INPAIRKSEDKVVDSVIVSELSKPLTPYCRCWRSGTFPLCDGSHVKHNKATGDNVGPLLL
        S+  L   P  AV  +FNA    + RRR AAVVVRAEG  INP IRK+E+KVVDSV+V+EL+KPLT YCRCWRSGTFPLCDG+HVKHNKATGDNVGPLLL
Subjt:  SSLSLIPLPQAAVAANFNAGGGVRRRRRLAAVVVRAEG--INPAIRKSEDKVVDSVIVSELSKPLTPYCRCWRSGTFPLCDGSHVKHNKATGDNVGPLLL

Query:  KKQ
        KKQ
Subjt:  KKQ

A0A6A4MET8 ZnF_CDGSH domain-containing protein (Fragment)5.8e-3172.28Show/hide
Query:  AVAANFNAGG-----------GVRRRRRLAAVVVRAEGINPAIRKSEDKVVDSVIVSELSKPLTPYCRCWRSGTFPLCDGSHVKHNKATGDNVGPLLLKK
        AV A F+ GG           G + R R AAVVVRAE INP IRKSE KV DSV+V+ELSKPLT YCRCWRSGTFPLCDGSHVKHNKATGDNVGPLLLKK
Subjt:  AVAANFNAGG-----------GVRRRRRLAAVVVRAEGINPAIRKSEDKVVDSVIVSELSKPLTPYCRCWRSGTFPLCDGSHVKHNKATGDNVGPLLLKK

Query:  Q
        +
Subjt:  Q

A0A6J1H2X5 CDGSH iron-sulfur domain-containing protein NEET2.6e-3180.9Show/hide
Query:  NFNAGGGVRRRRRLAAVVVRAEG---INPAIRKSEDKVVDSVIVSELSKPLTPYCRCWRSGTFPLCDGSHVKHNKATGDNVGPLLLKKQ
        NF  GG  RRR     VVVRAEG   INPAIRKSEDKVVDSV+V++L+KPLTPYCRCWRS TFPLCDGSHVKHNKATGDNVGPLLLKKQ
Subjt:  NFNAGGGVRRRRRLAAVVVRAEG---INPAIRKSEDKVVDSVIVSELSKPLTPYCRCWRSGTFPLCDGSHVKHNKATGDNVGPLLLKKQ

A0A6J1K1P5 CDGSH iron-sulfur domain-containing protein NEET3.4e-3180.9Show/hide
Query:  NFNAGGGVRRRRRLAAVVVRAEG---INPAIRKSEDKVVDSVIVSELSKPLTPYCRCWRSGTFPLCDGSHVKHNKATGDNVGPLLLKKQ
        NF  GG  RRR     VVVRAEG   INPAIRKSEDKVVDSV+V++L+KPLTPYCRCWRS TFPLCDGSHVKHNKATGDNVGPLLLKKQ
Subjt:  NFNAGGGVRRRRRLAAVVVRAEG---INPAIRKSEDKVVDSVIVSELSKPLTPYCRCWRSGTFPLCDGSHVKHNKATGDNVGPLLLKKQ

SwissProt top hitse value%identityAlignment
B9EPI1 CDGSH iron-sulfur domain-containing protein 2A1.7e-1657.14Show/hide
Query:  INPAIRKSEDKVVDSVIVSELSKPLTPYCRCWRSGTFPLCDGSHVKHNKATGDNVGPLLLKKQ
        IN  I+K   KVV+ + + +L +    YCRCWRS TFP+CD SH+KHN+ TGDNVGPL+LKK+
Subjt:  INPAIRKSEDKVVDSVIVSELSKPLTPYCRCWRSGTFPLCDGSHVKHNKATGDNVGPLLLKKQ

C1BI29 CDGSH iron-sulfur domain-containing protein 2A1.3e-1657.14Show/hide
Query:  INPAIRKSEDKVVDSVIVSELSKPLTPYCRCWRSGTFPLCDGSHVKHNKATGDNVGPLLLKKQ
        IN  I+K   KVV+ + + +L++    YCRCWRS TFP+CD SH+KHN+ TGDNVGPL+LKK+
Subjt:  INPAIRKSEDKVVDSVIVSELSKPLTPYCRCWRSGTFPLCDGSHVKHNKATGDNVGPLLLKKQ

Q6PCF8 CDGSH iron-sulfur domain-containing protein 2A1.7e-1658.73Show/hide
Query:  INPAIRKSEDKVVDSVIVSELSKPLTPYCRCWRSGTFPLCDGSHVKHNKATGDNVGPLLLKKQ
        IN  I+K   KVV+ + + +L      YCRCWRS TFP+CDGSH KHN+ TGDNVGPL+LKK+
Subjt:  INPAIRKSEDKVVDSVIVSELSKPLTPYCRCWRSGTFPLCDGSHVKHNKATGDNVGPLLLKKQ

Q7T326 CDGSH iron-sulfur domain-containing protein 26.0e-1758.73Show/hide
Query:  INPAIRKSEDKVVDSVIVSELSKPLTPYCRCWRSGTFPLCDGSHVKHNKATGDNVGPLLLKKQ
        IN  I+K   KVV+ + + +L  P   YCRCWRS TFP+CD SH+KHN+ TGDNVGPL+LKK+
Subjt:  INPAIRKSEDKVVDSVIVSELSKPLTPYCRCWRSGTFPLCDGSHVKHNKATGDNVGPLLLKKQ

Q9FLI7 CDGSH iron-sulfur domain-containing protein NEET3.3e-3178.57Show/hide
Query:  GGVRRRRRLAAVVVRAE---GINPAIRKSEDKVVDSVIVSELSKPLTPYCRCWRSGTFPLCDGSHVKHNKATGDNVGPLLLKKQ
        GG   R++   VVVRAE   GINP IRK+EDKVVDSV+V+ELSK +TPYCRCWRSGTFPLCDGSHVKHNKA GDNVGPLLLKKQ
Subjt:  GGVRRRRRLAAVVVRAE---GINPAIRKSEDKVVDSVIVSELSKPLTPYCRCWRSGTFPLCDGSHVKHNKATGDNVGPLLLKKQ

Arabidopsis top hitse value%identityAlignment
AT5G51720.1 2 iron, 2 sulfur cluster binding2.3e-3278.57Show/hide
Query:  GGVRRRRRLAAVVVRAE---GINPAIRKSEDKVVDSVIVSELSKPLTPYCRCWRSGTFPLCDGSHVKHNKATGDNVGPLLLKKQ
        GG   R++   VVVRAE   GINP IRK+EDKVVDSV+V+ELSK +TPYCRCWRSGTFPLCDGSHVKHNKA GDNVGPLLLKKQ
Subjt:  GGVRRRRRLAAVVVRAE---GINPAIRKSEDKVVDSVIVSELSKPLTPYCRCWRSGTFPLCDGSHVKHNKATGDNVGPLLLKKQ


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCCATTTCTTCCTTATCACTTATCCCTCTTCCTCAGGCCGCCGTCGCCGCTAACTTCAACGCCGGCGGCGGAGTTCGGCGGCGGCGGCGTTTGGCGGCGGTGGTGGT
CAGAGCTGAAGGCATAAATCCGGCGATAAGGAAGAGCGAAGACAAAGTGGTGGACTCTGTAATTGTGTCTGAACTCTCCAAGCCCCTCACTCCCTATTGCAGGTGTTGGA
GGTCAGGCACATTTCCCCTGTGTGATGGAAGCCATGTTAAGCACAACAAAGCCACTGGTGATAATGTTGGCCCTTTGCTCTTAAAGAAACAATAG
mRNA sequenceShow/hide mRNA sequence
GAAAATGGAGTTTAAAAGTGAAAGGGGAAAAAATACGTGTCAAAAGGAGATCCACCGGTAGATAAGGGTATGAAGTTAAAAGCGTGAGGTACACACAATGGCGTCCATCC
ATCATCTCCACAATGCCCATTTCTTCCTTATCACTTATCCCTCTTCCTCAGGCCGCCGTCGCCGCTAACTTCAACGCCGGCGGCGGAGTTCGGCGGCGGCGGCGTTTGGC
GGCGGTGGTGGTCAGAGCTGAAGGCATAAATCCGGCGATAAGGAAGAGCGAAGACAAAGTGGTGGACTCTGTAATTGTGTCTGAACTCTCCAAGCCCCTCACTCCCTATT
GCAGGTGTTGGAGGTCAGGCACATTTCCCCTGTGTGATGGAAGCCATGTTAAGCACAACAAAGCCACTGGTGATAATGTTGGCCCTTTGCTCTTAAAGAAACAATAGACA
AACTCTCTCATCTCTTGTTTTTTCTCAATTATTTCTACTTTTGCTGCTAAAATCTTTGCTTTCATATCTACTCTTATCTTAATATATATGAATCTAACAATTTAGCTGAC
CACAATTGTCAATCAAGAGTTCATGAATTAGAATACTCACCTCCAA
Protein sequenceShow/hide protein sequence
MPISSLSLIPLPQAAVAANFNAGGGVRRRRRLAAVVVRAEGINPAIRKSEDKVVDSVIVSELSKPLTPYCRCWRSGTFPLCDGSHVKHNKATGDNVGPLLLKKQ