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Sed0001900 (gene) of Chayote v1 genome

Gene IDSed0001900
OrganismSechium edule (Chayote v1)
DescriptionCytoplasmic tRNA 2-thiolation protein 1
Genome locationLG03:4570779..4571003
RNA-Seq ExpressionSed0001900
SyntenySed0001900
Gene Ontology termsGO:0016779 - nucleotidyltransferase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
EOY18099.1 Cytoplasmic tRNA 2-thiolation protein 1 [Theobroma cacao]5.5e-2287.5Show/hide
Query:  FFQMPLHYPRYTKKDYEDMPEWKLDRLLVEYGLPTWGDLPYKRQFAMGAFLWPDFH
        FFQMPLHYPRYT+KDY+DMPEWKLDRLL EYGL   GDL YKRQFAMGAFLWPDFH
Subjt:  FFQMPLHYPRYTKKDYEDMPEWKLDRLLVEYGLPTWGDLPYKRQFAMGAFLWPDFH

KAF9599433.1 hypothetical protein IFM89_037199 [Coptis chinensis]2.5e-2279.37Show/hide
Query:  MENNNKREDFFQMPLHYPRYTKKDYEDMPEWKLDRLLVEYGLPTWGDLPYKRQFAMGAFLWPD
        ME+ NK  +FFQMPLHYPRYTKKDY+DMPEWK+DRLL EYGLP  G+L YKR+FAMGAFLWPD
Subjt:  MENNNKREDFFQMPLHYPRYTKKDYEDMPEWKLDRLLVEYGLPTWGDLPYKRQFAMGAFLWPD

KAG6578420.1 hypothetical protein SDJN03_22868, partial [Cucurbita argyrosperma subsp. sororia]1.4e-2571.08Show/hide
Query:  MENNNKR---EDFFQMPLHYPRYTKKDYEDMPEWKLDRLLVEYGLPTWGDLPYKRQFAMGAFLWPDFH------PSVLNKKVM
        MENN K+   ++FFQMPLHYPRY+K DYE+MPEWKLDRLL+EYGLPT G+LPYKRQFAMGAFLW D+H      PS+LN K+M
Subjt:  MENNNKR---EDFFQMPLHYPRYTKKDYEDMPEWKLDRLLVEYGLPTWGDLPYKRQFAMGAFLWPDFH------PSVLNKKVM

PON37357.1 hypothetical protein PanWU01x14_320780 [Parasponia andersonii]7.2e-2268.42Show/hide
Query:  ENNNKREDFFQMPLHYPRYTKKDYEDMPEWKLDRLLVEYGLPTWGDLPYKRQFAMGAFLWPDFH----PSVLNKKV
        +++N    +FQMPLHYPRYTKKDY+DMPEWKLDRLL EYGL T GDL YKR FA+GAFLWPD+      S+L+KKV
Subjt:  ENNNKREDFFQMPLHYPRYTKKDYEDMPEWKLDRLLVEYGLPTWGDLPYKRQFAMGAFLWPDFH----PSVLNKKV

XP_040869322.1 uncharacterized protein LOC121174311, partial [Glycine max]1.5e-2273.24Show/hide
Query:  NKREDFFQMPLHYPRYTKKDYEDMPEWKLDRLLVEYGLPTWGDLPYKRQFAMGAFLWPDF-HPSVLNKKVM
        N    FFQMPLHYPRYT+KDY+DMPEWKLDRLL EYGLPT GDL YKR+FAMGAFLWP+  H  + NKK++
Subjt:  NKREDFFQMPLHYPRYTKKDYEDMPEWKLDRLLVEYGLPTWGDLPYKRQFAMGAFLWPDF-HPSVLNKKVM

TrEMBL top hitse value%identityAlignment
A0A061FTQ6 Cytoplasmic tRNA 2-thiolation protein 12.7e-2287.5Show/hide
Query:  FFQMPLHYPRYTKKDYEDMPEWKLDRLLVEYGLPTWGDLPYKRQFAMGAFLWPDFH
        FFQMPLHYPRYT+KDY+DMPEWKLDRLL EYGL   GDL YKRQFAMGAFLWPDFH
Subjt:  FFQMPLHYPRYTKKDYEDMPEWKLDRLLVEYGLPTWGDLPYKRQFAMGAFLWPDFH

A0A200R4Z5 Uncharacterized protein6.0e-2272.46Show/hide
Query:  MENNNKR---EDFFQMPLHYPRYTKKDYEDMPEWKLDRLLVEYGLPTWGDLPYKRQFAMGAFLWPDFHP
        MEN  K      +FQMPLHYPRY++KDYEDMPEWKLDRLL+EYGLP  GDL YKR++AMGAFLWPD  P
Subjt:  MENNNKR---EDFFQMPLHYPRYTKKDYEDMPEWKLDRLLVEYGLPTWGDLPYKRQFAMGAFLWPDFHP

A0A2P5ALC9 Uncharacterized protein3.5e-2268.42Show/hide
Query:  ENNNKREDFFQMPLHYPRYTKKDYEDMPEWKLDRLLVEYGLPTWGDLPYKRQFAMGAFLWPDFH----PSVLNKKV
        +++N    +FQMPLHYPRYTKKDY+DMPEWKLDRLL EYGL T GDL YKR FA+GAFLWPD+      S+L+KKV
Subjt:  ENNNKREDFFQMPLHYPRYTKKDYEDMPEWKLDRLLVEYGLPTWGDLPYKRQFAMGAFLWPDFH----PSVLNKKV

A0A2P5CX72 Cytoplasmic tRNA 2-thiolation protein6.0e-2275Show/hide
Query:  ENNNKREDFFQMPLHYPRYTKKDYEDMPEWKLDRLLVEYGLPTWGDLPYKRQFAMGAFLWPDFH
        +++N    +FQMPLHYPRYTKKDY+DMPEWKLDRLL EYGL T GDL YKR FA+GAFLWPD+H
Subjt:  ENNNKREDFFQMPLHYPRYTKKDYEDMPEWKLDRLLVEYGLPTWGDLPYKRQFAMGAFLWPDFH

A0A7J6DZ12 Uncharacterized protein3.5e-2284.21Show/hide
Query:  FFQMPLHYPRYTKKDYEDMPEWKLDRLLVEYGLPTWGDLPYKRQFAMGAFLWPDFHP
        +FQMPLHYPRYTKKDY+DMPEWKLDRLL EYGLPT GDL YKR FA+GAFLWP F P
Subjt:  FFQMPLHYPRYTKKDYEDMPEWKLDRLLVEYGLPTWGDLPYKRQFAMGAFLWPDFHP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G09950.1 unknown protein3.5e-1462.07Show/hide
Query:  FQMPLHYPRYTKKDYEDMPEWKLDRLLVEYGLPTWGD--LPYKRQFAMGAFLWPDFHP
        F+MPLHYPRYTK+DYE+M EW+LD LL EYGL  + D  L  KR FA+  F+WP  HP
Subjt:  FQMPLHYPRYTKKDYEDMPEWKLDRLLVEYGLPTWGD--LPYKRQFAMGAFLWPDFHP

AT3G11405.1 unknown protein2.1e-1161.54Show/hide
Query:  FQMPLHYPRYTKKDYEDMPEWKLDRLLVEYGLPT-WGDLPYKRQFAMGAFLW
        FQMPL YP Y K+ Y+ M E +LDRLL  YGLPT  G+L  K++FA+GAFLW
Subjt:  FQMPLHYPRYTKKDYEDMPEWKLDRLLVEYGLPT-WGDLPYKRQFAMGAFLW

AT3G55570.1 unknown protein5.5e-2066.13Show/hide
Query:  MENNNKRE-DFFQMPLHYPRYTKKDYEDMPEWKLDRLLVEYGLPTWGDLPYKRQFAMGAFLW
        +EN    E   F+MPLHYPRY+K+DY+DMPEWKLDR+L +YGL T+GDL +KR FA+GAFLW
Subjt:  MENNNKRE-DFFQMPLHYPRYTKKDYEDMPEWKLDRLLVEYGLPTWGDLPYKRQFAMGAFLW

AT5G41761.1 unknown protein6.7e-1874.51Show/hide
Query:  FQMPLHYPRYTKKDYEDMPEWKLDRLLVEYGLPTWGDLPYKRQFAMGAFLW
        FQ+PLHYP+YTK DYE MPEW+LDRLL EYGLP  GD   KR+FA+GAFLW
Subjt:  FQMPLHYPRYTKKDYEDMPEWKLDRLLVEYGLPTWGDLPYKRQFAMGAFLW

AT5G55620.1 unknown protein1.5e-1254.1Show/hide
Query:  KREDF---FQMPLHYPRYTKKDYEDMPEWKLDRLLVEYGLPTWGDLPYKRQFAMGAFLWPD
        K+E+F   FQ+PLHYP+Y+K DYE M + +LD LL +YG    G L  KR FA+ +FLWPD
Subjt:  KREDF---FQMPLHYPRYTKKDYEDMPEWKLDRLLVEYGLPTWGDLPYKRQFAMGAFLWPD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGAACAATAACAAAAGAGAAGACTTCTTCCAAATGCCACTTCACTACCCGAGATACACGAAGAAGGACTACGAGGACATGCCTGAATGGAAGCTCGACCGCCTTCT
CGTCGAGTACGGCCTCCCGACGTGGGGTGACCTTCCCTACAAACGACAGTTCGCAATGGGTGCTTTTCTTTGGCCTGATTTCCATCCTTCTGTTCTTAACAAAAAAGTTA
TGTAG
mRNA sequenceShow/hide mRNA sequence
ATGGAGAACAATAACAAAAGAGAAGACTTCTTCCAAATGCCACTTCACTACCCGAGATACACGAAGAAGGACTACGAGGACATGCCTGAATGGAAGCTCGACCGCCTTCT
CGTCGAGTACGGCCTCCCGACGTGGGGTGACCTTCCCTACAAACGACAGTTCGCAATGGGTGCTTTTCTTTGGCCTGATTTCCATCCTTCTGTTCTTAACAAAAAAGTTA
TGTAG
Protein sequenceShow/hide protein sequence
MENNNKREDFFQMPLHYPRYTKKDYEDMPEWKLDRLLVEYGLPTWGDLPYKRQFAMGAFLWPDFHPSVLNKKVM