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Sed0001914 (gene) of Chayote v1 genome

Gene IDSed0001914
OrganismSechium edule (Chayote v1)
Descriptiontranscription initiation factor TFIID subunit 13
Genome locationLG09:36980954..36984552
RNA-Seq ExpressionSed0001914
SyntenySed0001914
Gene Ontology termsGO:0006366 - transcription by RNA polymerase II (biological process)
GO:0006413 - translational initiation (biological process)
GO:0009793 - embryo development ending in seed dormancy (biological process)
GO:0009960 - endosperm development (biological process)
GO:0005634 - nucleus (cellular component)
GO:0003743 - translation initiation factor activity (molecular function)
GO:0046982 - protein heterodimerization activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022144527.1 transcription initiation factor TFIID subunit 13 [Momordica charantia]4.5e-6293.38Show/hide
Query:  MNNPISGSSSKQRTGSTQPSETHFKRKRGVFQKELQHMMYGFGDDPNPLPESIALMEDIVVEYITELVYKAQEIGSSRGKLSVEDFLYLMRKDPRKLNRS
        MNNP +G SSKQRTGS+QPSET FKRKRGVFQKELQHMMYGFGDDPNPLPES+ALMEDIVVEYITELVYKAQEIGS RGKLSVEDFLYLMRKDPRKLNRS
Subjt:  MNNPISGSSSKQRTGSTQPSETHFKRKRGVFQKELQHMMYGFGDDPNPLPESIALMEDIVVEYITELVYKAQEIGSSRGKLSVEDFLYLMRKDPRKLNRS

Query:  TELLSMNEELKQARRAFEIDEDKLKKAFEEDDKVDQ
        TELLSMNEELKQARRAFEIDEDKLKKAFEE+DK+DQ
Subjt:  TELLSMNEELKQARRAFEIDEDKLKKAFEEDDKVDQ

XP_022953440.1 transcription initiation factor TFIID subunit 13 [Cucurbita moschata]5.9e-6294.12Show/hide
Query:  MNNPISGSSSKQRTGSTQPSETHFKRKRGVFQKELQHMMYGFGDDPNPLPESIALMEDIVVEYITELVYKAQEIGSSRGKLSVEDFLYLMRKDPRKLNRS
        MNNP  GSSSKQRTGS+QPSET FKRKRGVFQKELQHMMYGFGDD NPLPES+ALMEDIVVEYITELVYKAQEIGS RGKLSVEDFLYLMRKDPRKLNRS
Subjt:  MNNPISGSSSKQRTGSTQPSETHFKRKRGVFQKELQHMMYGFGDDPNPLPESIALMEDIVVEYITELVYKAQEIGSSRGKLSVEDFLYLMRKDPRKLNRS

Query:  TELLSMNEELKQARRAFEIDEDKLKKAFEEDDKVDQ
        TELLSMNEELKQARRAFEIDEDKLKKAFEED+KVDQ
Subjt:  TELLSMNEELKQARRAFEIDEDKLKKAFEEDDKVDQ

XP_022991537.1 transcription initiation factor TFIID subunit 13 [Cucurbita maxima]4.5e-6294.12Show/hide
Query:  MNNPISGSSSKQRTGSTQPSETHFKRKRGVFQKELQHMMYGFGDDPNPLPESIALMEDIVVEYITELVYKAQEIGSSRGKLSVEDFLYLMRKDPRKLNRS
        MNNP +GSSSKQRTGS+QPSET FKRKRGVFQKELQHMMYGFGDD NPLPES+ALMEDIVVEYITELVYKAQEIGS RGKLSVEDFLYLMRKDPRKLNRS
Subjt:  MNNPISGSSSKQRTGSTQPSETHFKRKRGVFQKELQHMMYGFGDDPNPLPESIALMEDIVVEYITELVYKAQEIGSSRGKLSVEDFLYLMRKDPRKLNRS

Query:  TELLSMNEELKQARRAFEIDEDKLKKAFEEDDKVDQ
        TELLSMNEELKQARRAFEIDEDKLKKAFEED+KVDQ
Subjt:  TELLSMNEELKQARRAFEIDEDKLKKAFEEDDKVDQ

XP_023547584.1 transcription initiation factor TFIID subunit 13 [Cucurbita pepo subsp. pepo]1.0e-6193.38Show/hide
Query:  MNNPISGSSSKQRTGSTQPSETHFKRKRGVFQKELQHMMYGFGDDPNPLPESIALMEDIVVEYITELVYKAQEIGSSRGKLSVEDFLYLMRKDPRKLNRS
        MNNP +GSSSKQRTG++QPSET FKRKRGVFQKELQHMMYGFGDD NPLPES+ALMEDIVVEYITELVYKAQEIGS RGKLSVEDFLYLMRKDPRKLNRS
Subjt:  MNNPISGSSSKQRTGSTQPSETHFKRKRGVFQKELQHMMYGFGDDPNPLPESIALMEDIVVEYITELVYKAQEIGSSRGKLSVEDFLYLMRKDPRKLNRS

Query:  TELLSMNEELKQARRAFEIDEDKLKKAFEEDDKVDQ
        TELLSMNEELKQARRAFEIDEDKLKKAFEED+KVDQ
Subjt:  TELLSMNEELKQARRAFEIDEDKLKKAFEEDDKVDQ

XP_038899215.1 transcription initiation factor TFIID subunit 13-like [Benincasa hispida]3.4e-6293.38Show/hide
Query:  MNNPISGSSSKQRTGSTQPSETHFKRKRGVFQKELQHMMYGFGDDPNPLPESIALMEDIVVEYITELVYKAQEIGSSRGKLSVEDFLYLMRKDPRKLNRS
        MNNP +GSSSKQRTGS+QPSET FKRKRGVFQKELQHMMYGFGDDPNPLPES+ALMEDIVVEYITELVYKAQEIGS RGKLSVEDFLYL+RKDPRKLNRS
Subjt:  MNNPISGSSSKQRTGSTQPSETHFKRKRGVFQKELQHMMYGFGDDPNPLPESIALMEDIVVEYITELVYKAQEIGSSRGKLSVEDFLYLMRKDPRKLNRS

Query:  TELLSMNEELKQARRAFEIDEDKLKKAFEEDDKVDQ
        TELLSMNEELKQARRAFEIDEDKLKKAFEE+DK+DQ
Subjt:  TELLSMNEELKQARRAFEIDEDKLKKAFEEDDKVDQ

TrEMBL top hitse value%identityAlignment
A0A1S3BRL0 transcription initiation factor TFIID subunit 131.8e-6193.33Show/hide
Query:  MNNPISGSSSKQRTGSTQPSETHFKRKRGVFQKELQHMMYGFGDDPNPLPESIALMEDIVVEYITELVYKAQEIGSSRGKLSVEDFLYLMRKDPRKLNRS
        MNN  +GSSSKQRTGS+QPSET FKRKRGVFQKELQHMMYGFGDDPNPLPES+ALMEDIVVEYITELVYKAQEIGS RGKLSVEDFLYLMRKDPRKLNRS
Subjt:  MNNPISGSSSKQRTGSTQPSETHFKRKRGVFQKELQHMMYGFGDDPNPLPESIALMEDIVVEYITELVYKAQEIGSSRGKLSVEDFLYLMRKDPRKLNRS

Query:  TELLSMNEELKQARRAFEIDEDKLKKAFEEDDKVD
        TELLSMNEELKQARRAFEIDEDKLKKAFEE+DK+D
Subjt:  TELLSMNEELKQARRAFEIDEDKLKKAFEEDDKVD

A0A5A7TZC2 Transcription initiation factor TFIID subunit 131.8e-6193.33Show/hide
Query:  MNNPISGSSSKQRTGSTQPSETHFKRKRGVFQKELQHMMYGFGDDPNPLPESIALMEDIVVEYITELVYKAQEIGSSRGKLSVEDFLYLMRKDPRKLNRS
        MNN  +GSSSKQRTGS+QPSET FKRKRGVFQKELQHMMYGFGDDPNPLPES+ALMEDIVVEYITELVYKAQEIGS RGKLSVEDFLYLMRKDPRKLNRS
Subjt:  MNNPISGSSSKQRTGSTQPSETHFKRKRGVFQKELQHMMYGFGDDPNPLPESIALMEDIVVEYITELVYKAQEIGSSRGKLSVEDFLYLMRKDPRKLNRS

Query:  TELLSMNEELKQARRAFEIDEDKLKKAFEEDDKVD
        TELLSMNEELKQARRAFEIDEDKLKKAFEE+DK+D
Subjt:  TELLSMNEELKQARRAFEIDEDKLKKAFEEDDKVD

A0A6J1CTQ0 transcription initiation factor TFIID subunit 132.2e-6293.38Show/hide
Query:  MNNPISGSSSKQRTGSTQPSETHFKRKRGVFQKELQHMMYGFGDDPNPLPESIALMEDIVVEYITELVYKAQEIGSSRGKLSVEDFLYLMRKDPRKLNRS
        MNNP +G SSKQRTGS+QPSET FKRKRGVFQKELQHMMYGFGDDPNPLPES+ALMEDIVVEYITELVYKAQEIGS RGKLSVEDFLYLMRKDPRKLNRS
Subjt:  MNNPISGSSSKQRTGSTQPSETHFKRKRGVFQKELQHMMYGFGDDPNPLPESIALMEDIVVEYITELVYKAQEIGSSRGKLSVEDFLYLMRKDPRKLNRS

Query:  TELLSMNEELKQARRAFEIDEDKLKKAFEEDDKVDQ
        TELLSMNEELKQARRAFEIDEDKLKKAFEE+DK+DQ
Subjt:  TELLSMNEELKQARRAFEIDEDKLKKAFEEDDKVDQ

A0A6J1GN10 transcription initiation factor TFIID subunit 132.8e-6294.12Show/hide
Query:  MNNPISGSSSKQRTGSTQPSETHFKRKRGVFQKELQHMMYGFGDDPNPLPESIALMEDIVVEYITELVYKAQEIGSSRGKLSVEDFLYLMRKDPRKLNRS
        MNNP  GSSSKQRTGS+QPSET FKRKRGVFQKELQHMMYGFGDD NPLPES+ALMEDIVVEYITELVYKAQEIGS RGKLSVEDFLYLMRKDPRKLNRS
Subjt:  MNNPISGSSSKQRTGSTQPSETHFKRKRGVFQKELQHMMYGFGDDPNPLPESIALMEDIVVEYITELVYKAQEIGSSRGKLSVEDFLYLMRKDPRKLNRS

Query:  TELLSMNEELKQARRAFEIDEDKLKKAFEEDDKVDQ
        TELLSMNEELKQARRAFEIDEDKLKKAFEED+KVDQ
Subjt:  TELLSMNEELKQARRAFEIDEDKLKKAFEEDDKVDQ

A0A6J1JWI2 transcription initiation factor TFIID subunit 132.2e-6294.12Show/hide
Query:  MNNPISGSSSKQRTGSTQPSETHFKRKRGVFQKELQHMMYGFGDDPNPLPESIALMEDIVVEYITELVYKAQEIGSSRGKLSVEDFLYLMRKDPRKLNRS
        MNNP +GSSSKQRTGS+QPSET FKRKRGVFQKELQHMMYGFGDD NPLPES+ALMEDIVVEYITELVYKAQEIGS RGKLSVEDFLYLMRKDPRKLNRS
Subjt:  MNNPISGSSSKQRTGSTQPSETHFKRKRGVFQKELQHMMYGFGDDPNPLPESIALMEDIVVEYITELVYKAQEIGSSRGKLSVEDFLYLMRKDPRKLNRS

Query:  TELLSMNEELKQARRAFEIDEDKLKKAFEEDDKVDQ
        TELLSMNEELKQARRAFEIDEDKLKKAFEED+KVDQ
Subjt:  TELLSMNEELKQARRAFEIDEDKLKKAFEEDDKVDQ

SwissProt top hitse value%identityAlignment
P61216 Transcription initiation factor TFIID subunit 136.6e-2458.51Show/hide
Query:  KRKRGVFQKELQHMMYGFGDDPNPLPESIALMEDIVVEYITELVYKAQEIGSSRGKLSVEDFLYLMRKDPRKLNRSTELLSMNEELKQARRAFE
        KRKR +F KEL+ MMYGFGDD NP  ES+ ++ED+V+E+ITE+ +KA  IG  +G++ VED ++L+RKDPRK  R  +LL+MNEELK+AR+AF+
Subjt:  KRKRGVFQKELQHMMYGFGDDPNPLPESIALMEDIVVEYITELVYKAQEIGSSRGKLSVEDFLYLMRKDPRKLNRSTELLSMNEELKQARRAFE

Q148M7 Transcription initiation factor TFIID subunit 136.6e-2458.51Show/hide
Query:  KRKRGVFQKELQHMMYGFGDDPNPLPESIALMEDIVVEYITELVYKAQEIGSSRGKLSVEDFLYLMRKDPRKLNRSTELLSMNEELKQARRAFE
        KRKR +F KEL+ MMYGFGDD NP  ES+ ++ED+V+E+ITE+ +KA  IG  +G++ VED ++L+RKDPRK  R  +LL+MNEELK+AR+AF+
Subjt:  KRKRGVFQKELQHMMYGFGDDPNPLPESIALMEDIVVEYITELVYKAQEIGSSRGKLSVEDFLYLMRKDPRKLNRSTELLSMNEELKQARRAFE

Q15543 Transcription initiation factor TFIID subunit 136.6e-2458.51Show/hide
Query:  KRKRGVFQKELQHMMYGFGDDPNPLPESIALMEDIVVEYITELVYKAQEIGSSRGKLSVEDFLYLMRKDPRKLNRSTELLSMNEELKQARRAFE
        KRKR +F KEL+ MMYGFGDD NP  ES+ ++ED+V+E+ITE+ +KA  IG  +G++ VED ++L+RKDPRK  R  +LL+MNEELK+AR+AF+
Subjt:  KRKRGVFQKELQHMMYGFGDDPNPLPESIALMEDIVVEYITELVYKAQEIGSSRGKLSVEDFLYLMRKDPRKLNRSTELLSMNEELKQARRAFE

Q5R9W6 Transcription initiation factor TFIID subunit 136.6e-2458.51Show/hide
Query:  KRKRGVFQKELQHMMYGFGDDPNPLPESIALMEDIVVEYITELVYKAQEIGSSRGKLSVEDFLYLMRKDPRKLNRSTELLSMNEELKQARRAFE
        KRKR +F KEL+ MMYGFGDD NP  ES+ ++ED+V+E+ITE+ +KA  IG  +G++ VED ++L+RKDPRK  R  +LL+MNEELK+AR+AF+
Subjt:  KRKRGVFQKELQHMMYGFGDDPNPLPESIALMEDIVVEYITELVYKAQEIGSSRGKLSVEDFLYLMRKDPRKLNRSTELLSMNEELKQARRAFE

Q6NQH4 Transcription initiation factor TFIID subunit 133.4e-3664.71Show/hide
Query:  SGSSSKQRTGSTQPSETHFKRKRGVFQKELQHMMYGFGDDPNPLPESIALMEDIVVEYITELVYKAQEIGSSRGKLSVEDFLYLMRKDPRKLNRSTELLS
        S SS  +  G++QP E    +++ +FQKELQHMMYGFGD+ NPLPES+AL+EDIVVEY+T+L +KAQEIGS RG+L V+DFLYL+RKD  KLNR  ELL+
Subjt:  SGSSSKQRTGSTQPSETHFKRKRGVFQKELQHMMYGFGDDPNPLPESIALMEDIVVEYITELVYKAQEIGSSRGKLSVEDFLYLMRKDPRKLNRSTELLS

Query:  MNEELKQARRAFEIDEDKL
        M EELKQAR+AF++DE +L
Subjt:  MNEELKQARRAFEIDEDKL

Arabidopsis top hitse value%identityAlignment
AT1G02680.1 TBP-associated factor 132.4e-3764.71Show/hide
Query:  SGSSSKQRTGSTQPSETHFKRKRGVFQKELQHMMYGFGDDPNPLPESIALMEDIVVEYITELVYKAQEIGSSRGKLSVEDFLYLMRKDPRKLNRSTELLS
        S SS  +  G++QP E    +++ +FQKELQHMMYGFGD+ NPLPES+AL+EDIVVEY+T+L +KAQEIGS RG+L V+DFLYL+RKD  KLNR  ELL+
Subjt:  SGSSSKQRTGSTQPSETHFKRKRGVFQKELQHMMYGFGDDPNPLPESIALMEDIVVEYITELVYKAQEIGSSRGKLSVEDFLYLMRKDPRKLNRSTELLS

Query:  MNEELKQARRAFEIDEDKL
        M EELKQAR+AF++DE +L
Subjt:  MNEELKQARRAFEIDEDKL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAACAATCCAATTTCTGGGTCGTCCTCGAAGCAAAGAACTGGATCGACTCAGCCCTCTGAAACTCATTTTAAACGCAAACGAGGGGTTTTTCAGAAGGAATTGCAGCA
CATGATGTATGGTTTTGGAGATGATCCAAATCCCCTTCCAGAGTCTATAGCACTTATGGAGGACATAGTTGTGGAGTACATCACTGAACTGGTATATAAAGCCCAGGAAA
TCGGATCGAGTAGGGGAAAACTATCAGTGGAAGACTTCTTGTATTTAATGCGCAAGGATCCGCGCAAACTTAACCGTTCTACCGAACTTTTGTCGATGAATGAAGAGCTG
AAACAGGCAAGGAGAGCTTTCGAGATAGACGAAGATAAGCTGAAAAAGGCGTTTGAAGAGGACGATAAGGTGGATCAATAG
mRNA sequenceShow/hide mRNA sequence
CTTGAATCTAAATTATCAAACTATATTTTAGTACCTATGAGCAAATTCGTTATTTAAGCAATAGATTTTTTAAAAAAAAAATGATGAAGAATTAAAGTCATAAATTCCCA
ATACCGTGGCCGTTAGGTCAGGAGTCTTTTGCAGAAACACTACGATAGTTTTCGTCTCGATTATTGATTGGAAGATTGTGAAGATGAACAATCCAATTTCTGGGTCGTCC
TCGAAGCAAAGAACTGGATCGACTCAGCCCTCTGAAACTCATTTTAAACGCAAACGAGGGGTTTTTCAGAAGGAATTGCAGCACATGATGTATGGTTTTGGAGATGATCC
AAATCCCCTTCCAGAGTCTATAGCACTTATGGAGGACATAGTTGTGGAGTACATCACTGAACTGGTATATAAAGCCCAGGAAATCGGATCGAGTAGGGGAAAACTATCAG
TGGAAGACTTCTTGTATTTAATGCGCAAGGATCCGCGCAAACTTAACCGTTCTACCGAACTTTTGTCGATGAATGAAGAGCTGAAACAGGCAAGGAGAGCTTTCGAGATA
GACGAAGATAAGCTGAAAAAGGCGTTTGAAGAGGACGATAAGGTGGATCAATAGGGAGATAGTCTGGGGGTCATGTGTTGCTGCACAGACAAAGTTCATCTCAAAGCCTC
CATGGTAGACAAGGCAAGGCAAACAATTACCATTAGCAAGTTTTTTTATTATTTTTTTTCCTGCTTAATGGCAACTCTAATGTAATTTAATCCTCCTCCTCTTTGCCGTA
ACCTACTTATTGAGTAGGGGCTTCTAGTATTGTACACACACTCCCTTTTTAATTAATGAAATGTCACTTCTTTTGGTAGCC
Protein sequenceShow/hide protein sequence
MNNPISGSSSKQRTGSTQPSETHFKRKRGVFQKELQHMMYGFGDDPNPLPESIALMEDIVVEYITELVYKAQEIGSSRGKLSVEDFLYLMRKDPRKLNRSTELLSMNEEL
KQARRAFEIDEDKLKKAFEEDDKVDQ