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Sed0001953 (gene) of Chayote v1 genome

Gene IDSed0001953
OrganismSechium edule (Chayote v1)
Descriptionclassical arabinogalactan protein 9-like
Genome locationLG04:31401329..31402107
RNA-Seq ExpressionSed0001953
SyntenySed0001953
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
GIM11471.1 hypothetical protein Vretimale_14967, partial [Volvox reticuliferus]6.5e-0453.27Show/hide
Query:  PSPAPLPAAAPPPSTPPPTAPPPATPPTVAPTPATPPPAVPPTPVPPPMLPPAVPPTAATPPSTAVPPSSPPSMSPMGPMPDSPPSPPGPSPADGTPPTV
        P P+P P + PPPS PPP+ PPP+ PP   P P+ PPP+ PP   PPP  PP  PP  + PP +  PPS PP  SP  P P SPP PP PSP    PP+ 
Subjt:  PSPAPLPAAAPPPSTPPPTAPPPATPPTVAPTPATPPPAVPPTPVPPPMLPPAVPPTAATPPSTAVPPSSPPSMSPMGPMPDSPPSPPGPSPADGTPPTV

Query:  PPGPPPS
        PP PPPS
Subjt:  PPGPPPS

KZM85975.1 hypothetical protein DCAR_026603 [Daucus carota subsp. sativus]5.8e-0556.48Show/hide
Query:  APSPAPLPAAAPPPSTPPPTAPPPATPPTVAPTPA-TPPPAVPPTPVPPPMLPPAVPPTAATPPSTAVPPSSPPSMSPMGPMPDSPPSPPGPSPADGTPP
        AP P+P PA APPP+ PPP APPP+ PP  AP P+  PPPA PP+P PPP  PP+ PP  A PPS   PP+ PPS  P    P SPP PP P P+   PP
Subjt:  APSPAPLPAAAPPPSTPPPTAPPPATPPTVAPTPA-TPPPAVPPTPVPPPMLPPAVPPTAATPPSTAVPPSSPPSMSPMGPMPDSPPSPPGPSPADGTPP

Query:  TVPPGPPP
          PP PPP
Subjt:  TVPPGPPP

XP_022923372.1 classical arabinogalactan protein 9-like [Cucurbita moschata]1.8e-1762.5Show/hide
Query:  MAAPRAMLVLFLSLLSL-SSAIAQAPSPAPLPA-AAPPPSTPPPTAPPPATPPTVA--PTPATPPPAVPPTPVPPPMLPPAVPPTAATPPSTAVPPSSPP
        MA  RAMLVL LSLLSL +SAIAQ+PSPAP PA AAPPP TPPP A PP TPP  A  P  A+PPP++     PP   PP VPP  A+PPS    PS  P
Subjt:  MAAPRAMLVLFLSLLSL-SSAIAQAPSPAPLPA-AAPPPSTPPPTAPPPATPPTVA--PTPATPPPAVPPTPVPPPMLPPAVPPTAATPPSTAVPPSSPP

Query:  SMSPMGPMPDSPPSPPGPS------PADGTPPTVPPGPPPSAGFSIQHGGYKAA-VAAALGGLAVVLL
        S      MPDSPPSPPGPS      PA  + P+ PP PPP AGFSIQHGGYKAA VAA LGGLA+VL+
Subjt:  SMSPMGPMPDSPPSPPGPS------PADGTPPTVPPGPPPSAGFSIQHGGYKAA-VAAALGGLAVVLL

XP_023553563.1 classical arabinogalactan protein 9-like [Cucurbita pepo subsp. pepo]3.1e-1459.76Show/hide
Query:  MAAPRAMLVLFLSLLSL-SSAIAQAPSPAPLPA-AAPPPSTPPPTAPPPATPPTVA--PTPATPPPAVPPTPVPPPMLPPAVPPTAATPPSTAVPPSSPP
        MA  RAMLVL LSLLSL +SAIAQ+PSPAP PA AAPPP TPPP A PP TPP  A  P  A+PPP++     PP   PP V P  A+PPS    PS  P
Subjt:  MAAPRAMLVLFLSLLSL-SSAIAQAPSPAPLPA-AAPPPSTPPPTAPPPATPPTVA--PTPATPPPAVPPTPVPPPMLPPAVPPTAATPPSTAVPPSSPP

Query:  SMSPMGPMPDSPPSPPGPSPADGTPPT-------VPPGPPPSAGFSIQHGGYKAA-VAAALGGLAVVLL
        +      MPDSPPSPPGPSP   + P+        P  PPP AGFSIQHGGYKAA VAA LGGLA+VL+
Subjt:  SMSPMGPMPDSPPSPPGPSPADGTPPT-------VPPGPPPSAGFSIQHGGYKAA-VAAALGGLAVVLL

XP_038903480.1 classical arabinogalactan protein 9-like [Benincasa hispida]3.6e-1559.52Show/hide
Query:  MAAPRAMLVLFLSLLSL-SSAIAQAPSPAPLP--AAAPPPSTPPPTAPPPATPPTVAPTPATPPPAVPPTPVPPPMLPPAVPPTAATPPSTAVPPSSPPS
        MA+ RAMLVL LSLL+L SS+IAQ+PSPAP P  AAAPPPS+PPP A PP TPP     PA  PP  P    PP   PPA+PP  A+PPS    P     
Subjt:  MAAPRAMLVLFLSLLSL-SSAIAQAPSPAPLP--AAAPPPSTPPPTAPPPATPPTVAPTPATPPPAVPPTPVPPPMLPPAVPPTAATPPSTAVPPSSPPS

Query:  MSPMGPMPDSPPSPPGPSPA--DGTPPTVPPG------PPPSAGFSIQHGGYKAAVAAALGGLAVVLL
            GPMPDSPPSPPGPSP+    +PPT  P       PPPSAGFSI  GGYKAA AA LGGLAV L+
Subjt:  MSPMGPMPDSPPSPPGPSPA--DGTPPTVPPG------PPPSAGFSIQHGGYKAAVAAALGGLAVVLL

TrEMBL top hitse value%identityAlignment
A0A0A0L458 Uncharacterized protein3.3e-1460Show/hide
Query:  MAAPRAMLVLFLSLLSL-SSAIAQAPSPAPLPA--AAPPPSTPPPTAPPPATPPTVA--PTPATPPPAVPPTPVPPPML-PPAVPPTAATPPSTAVP--P
        MA+ RAMLVL LSLLSL SS+IAQ+PSP+P PA  AAPPPSTPPP APPP TPP  A  P+  + PPA  PT  PP M  PP + P+ A  P  A+P  P
Subjt:  MAAPRAMLVLFLSLLSL-SSAIAQAPSPAPLPA--AAPPPSTPPPTAPPPATPPTVA--PTPATPPPAVPPTPVPPPML-PPAVPPTAATPPSTAVP--P

Query:  SSPPSMSPMGPMPDSPPSPPGPSPADGTPPTVPPGPPPSAGFSIQHGGYKAAVAAALGGLAVVLL
         SPPS SPM        SPPGP+PA    PT P   P SAGFSI  GGY A VAA LGGLAVVL+
Subjt:  SSPPSMSPMGPMPDSPPSPPGPSPADGTPPTVPPGPPPSAGFSIQHGGYKAAVAAALGGLAVVLL

A0A175YQR2 Uncharacterized protein2.8e-0556.48Show/hide
Query:  APSPAPLPAAAPPPSTPPPTAPPPATPPTVAPTPA-TPPPAVPPTPVPPPMLPPAVPPTAATPPSTAVPPSSPPSMSPMGPMPDSPPSPPGPSPADGTPP
        AP P+P PA APPP+ PPP APPP+ PP  AP P+  PPPA PP+P PPP  PP+ PP  A PPS   PP+ PPS  P    P SPP PP P P+   PP
Subjt:  APSPAPLPAAAPPPSTPPPTAPPPATPPTVAPTPA-TPPPAVPPTPVPPPMLPPAVPPTAATPPSTAVPPSSPPSMSPMGPMPDSPPSPPGPSPADGTPP

Query:  TVPPGPPP
          PP PPP
Subjt:  TVPPGPPP

A0A6J1E5X6 classical arabinogalactan protein 9-like8.5e-1862.5Show/hide
Query:  MAAPRAMLVLFLSLLSL-SSAIAQAPSPAPLPA-AAPPPSTPPPTAPPPATPPTVA--PTPATPPPAVPPTPVPPPMLPPAVPPTAATPPSTAVPPSSPP
        MA  RAMLVL LSLLSL +SAIAQ+PSPAP PA AAPPP TPPP A PP TPP  A  P  A+PPP++     PP   PP VPP  A+PPS    PS  P
Subjt:  MAAPRAMLVLFLSLLSL-SSAIAQAPSPAPLPA-AAPPPSTPPPTAPPPATPPTVA--PTPATPPPAVPPTPVPPPMLPPAVPPTAATPPSTAVPPSSPP

Query:  SMSPMGPMPDSPPSPPGPS------PADGTPPTVPPGPPPSAGFSIQHGGYKAA-VAAALGGLAVVLL
        S      MPDSPPSPPGPS      PA  + P+ PP PPP AGFSIQHGGYKAA VAA LGGLA+VL+
Subjt:  SMSPMGPMPDSPPSPPGPS------PADGTPPTVPPGPPPSAGFSIQHGGYKAA-VAAALGGLAVVLL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCGCCCCACGTGCCATGCTCGTGCTCTTTCTCTCTCTTCTTTCTCTCTCCTCCGCCATTGCTCAAGCTCCCTCCCCCGCTCCCCTTCCCGCCGCCGCACCTCCGCC
GTCAACTCCACCGCCGACCGCCCCACCTCCGGCCACCCCTCCAACGGTAGCCCCGACGCCGGCGACCCCACCTCCGGCCGTTCCCCCGACGCCAGTCCCGCCGCCTATGC
TACCCCCGGCGGTTCCACCGACGGCAGCCACGCCTCCGTCCACGGCGGTTCCTCCCTCTTCTCCGCCGTCCATGAGCCCAATGGGCCCAATGCCCGACAGCCCACCATCG
CCTCCAGGCCCAAGCCCAGCCGACGGAACACCACCCACCGTGCCTCCGGGTCCTCCGCCGAGCGCCGGATTTTCCATCCAGCACGGCGGGTACAAGGCGGCTGTTGCGGC
GGCGTTGGGTGGCCTGGCGGTGGTCTTGCTTTAA
mRNA sequenceShow/hide mRNA sequence
GCTTCAATCTTCACATCTTTCTTCGAGCCATGGCCGCCCCACGTGCCATGCTCGTGCTCTTTCTCTCTCTTCTTTCTCTCTCCTCCGCCATTGCTCAAGCTCCCTCCCCC
GCTCCCCTTCCCGCCGCCGCACCTCCGCCGTCAACTCCACCGCCGACCGCCCCACCTCCGGCCACCCCTCCAACGGTAGCCCCGACGCCGGCGACCCCACCTCCGGCCGT
TCCCCCGACGCCAGTCCCGCCGCCTATGCTACCCCCGGCGGTTCCACCGACGGCAGCCACGCCTCCGTCCACGGCGGTTCCTCCCTCTTCTCCGCCGTCCATGAGCCCAA
TGGGCCCAATGCCCGACAGCCCACCATCGCCTCCAGGCCCAAGCCCAGCCGACGGAACACCACCCACCGTGCCTCCGGGTCCTCCGCCGAGCGCCGGATTTTCCATCCAG
CACGGCGGGTACAAGGCGGCTGTTGCGGCGGCGTTGGGTGGCCTGGCGGTGGTCTTGCTTTAAATTAACAGCTTTTTAATTAATCTGGTGTAGATTATTATGAGCTTCAA
ATACTCATTTATTTGTGTATTCTTTTGATTTTCATCTTTTTTCCTAAATCTCTCTTCTTTTTCTTTTTCCTGAATGATTCTTGAGAGCGCCTTTGAGTGATTTGTGGGAT
ATGTGACAGTTTATTTCTTAGCATTTTTCATTTTTCTCAATAAGACACACCCTTGTGTTCTTCTTCCTGCTTTCCTATTTTTATTTTTCCTCAATTCAATAAATCATTAG
TTTTTATTC
Protein sequenceShow/hide protein sequence
MAAPRAMLVLFLSLLSLSSAIAQAPSPAPLPAAAPPPSTPPPTAPPPATPPTVAPTPATPPPAVPPTPVPPPMLPPAVPPTAATPPSTAVPPSSPPSMSPMGPMPDSPPS
PPGPSPADGTPPTVPPGPPPSAGFSIQHGGYKAAVAAALGGLAVVLL