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Sed0001961 (gene) of Chayote v1 genome

Gene IDSed0001961
OrganismSechium edule (Chayote v1)
DescriptionDNA-directed RNA polymerase subunit
Genome locationLG02:48596553..48600694
RNA-Seq ExpressionSed0001961
SyntenySed0001961
Gene Ontology termsGO:0001193 - maintenance of transcriptional fidelity during DNA-templated transcription elongation from RNA polymerase II promoter (biological process)
GO:0006283 - transcription-coupled nucleotide-excision repair (biological process)
GO:0006367 - transcription initiation from RNA polymerase II promoter (biological process)
GO:0006379 - mRNA cleavage (biological process)
GO:0005665 - RNA polymerase II, core complex (cellular component)
GO:0005730 - nucleolus (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003899 - DNA-directed 5'-3' RNA polymerase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001222 - Zinc finger, TFIIS-type
IPR001529 - DNA-directed RNA polymerase, M/15kDa subunit
IPR012164 - DNA-directed RNA polymerase subunit/transcription factor S
IPR019761 - DNA-directed RNA polymerase M, 15kDa subunit, conserved site
IPR034012 - Pol II subunit B9, C-terminal zinc ribbon


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008438942.1 PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 9A [Cucumis melo]3.4e-6398.25Show/hide
Query:  MSTMKFCRECNNILYPKEDKDEKILLYACRNCDHQEVADNNCVYRNEIHHSVGERTQVLQDVAADPTLPRTKAVRCAQCNHGEAVFFQATARGEEGMTLF
        MSTMKFCRECNNILYPKED+DEKILLYACRNCDHQEVADNNCVYRNEIHH+VGERTQVLQDVAADPTLPRTKAVRCAQCNHGEAVFFQATARGEEGMTLF
Subjt:  MSTMKFCRECNNILYPKEDKDEKILLYACRNCDHQEVADNNCVYRNEIHHSVGERTQVLQDVAADPTLPRTKAVRCAQCNHGEAVFFQATARGEEGMTLF

Query:  FVCCNPNCGHRWRD
        FVCCNPNCGHRWRD
Subjt:  FVCCNPNCGHRWRD

XP_010268008.1 PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 9A [Nelumbo nucifera]2.2e-6296.49Show/hide
Query:  MSTMKFCRECNNILYPKEDKDEKILLYACRNCDHQEVADNNCVYRNEIHHSVGERTQVLQDVAADPTLPRTKAVRCAQCNHGEAVFFQATARGEEGMTLF
        MSTMKFCRECNNILYPKEDK++KILLYACRNCDHQEVADNNCVYRNEIHHSVGERTQVLQDVAADPTLPRTK+VRCAQCNHGEAVFFQAT+RGEEGMTLF
Subjt:  MSTMKFCRECNNILYPKEDKDEKILLYACRNCDHQEVADNNCVYRNEIHHSVGERTQVLQDVAADPTLPRTKAVRCAQCNHGEAVFFQATARGEEGMTLF

Query:  FVCCNPNCGHRWRD
        FVCCNPNCGHRWRD
Subjt:  FVCCNPNCGHRWRD

XP_024019992.1 DNA-directed RNA polymerases II, IV and V subunit 9A [Morus notabilis]7.6e-6397.37Show/hide
Query:  MSTMKFCRECNNILYPKEDKDEKILLYACRNCDHQEVADNNCVYRNEIHHSVGERTQVLQDVAADPTLPRTKAVRCAQCNHGEAVFFQATARGEEGMTLF
        MSTMKFCRECNNILYPKED+D+KILLYACRNCDHQEVADNNCVYRNEIHHSVGERTQVLQDVAADPTLPRTK+VRCAQCNHGEAVFFQATARGEEGMTLF
Subjt:  MSTMKFCRECNNILYPKEDKDEKILLYACRNCDHQEVADNNCVYRNEIHHSVGERTQVLQDVAADPTLPRTKAVRCAQCNHGEAVFFQATARGEEGMTLF

Query:  FVCCNPNCGHRWRD
        FVCCNPNCGHRWRD
Subjt:  FVCCNPNCGHRWRD

XP_024963039.1 DNA-directed RNA polymerases II, IV and V subunit 9A [Cynara cardunculus var. scolymus]1.7e-6297.37Show/hide
Query:  MSTMKFCRECNNILYPKEDKDEKILLYACRNCDHQEVADNNCVYRNEIHHSVGERTQVLQDVAADPTLPRTKAVRCAQCNHGEAVFFQATARGEEGMTLF
        MSTMKFCRECNNILYPKEDKD+KILLYACRNCDHQEVADNNCVYRNEIHH+VGERTQVLQDVAADPTLPRTKAVRCAQC HGEAVFFQATARGEEGMTLF
Subjt:  MSTMKFCRECNNILYPKEDKDEKILLYACRNCDHQEVADNNCVYRNEIHHSVGERTQVLQDVAADPTLPRTKAVRCAQCNHGEAVFFQATARGEEGMTLF

Query:  FVCCNPNCGHRWRD
        FVCCNPNCGHRWRD
Subjt:  FVCCNPNCGHRWRD

XP_030503042.1 DNA-directed RNA polymerases II, IV and V subunit 9A [Cannabis sativa]1.5e-6399.12Show/hide
Query:  MSTMKFCRECNNILYPKEDKDEKILLYACRNCDHQEVADNNCVYRNEIHHSVGERTQVLQDVAADPTLPRTKAVRCAQCNHGEAVFFQATARGEEGMTLF
        MSTMKFCRECNNILYPKED+DEKILLYACRNCDHQEVADNNCVYRNEIHHSVGERTQVLQDVAADPTLPRTKAVRCAQCNHGEAVFFQATARGEEGMTLF
Subjt:  MSTMKFCRECNNILYPKEDKDEKILLYACRNCDHQEVADNNCVYRNEIHHSVGERTQVLQDVAADPTLPRTKAVRCAQCNHGEAVFFQATARGEEGMTLF

Query:  FVCCNPNCGHRWRD
        FVCCNPNCGHRWRD
Subjt:  FVCCNPNCGHRWRD

TrEMBL top hitse value%identityAlignment
A0A0A0L816 DNA-directed RNA polymerase subunit1.7e-6398.25Show/hide
Query:  MSTMKFCRECNNILYPKEDKDEKILLYACRNCDHQEVADNNCVYRNEIHHSVGERTQVLQDVAADPTLPRTKAVRCAQCNHGEAVFFQATARGEEGMTLF
        MSTMKFCRECNNILYPKED+DEKILLYACRNCDHQEVADNNCVYRNEIHH+VGERTQVLQDVAADPTLPRTKAVRCAQCNHGEAVFFQATARGEEGMTLF
Subjt:  MSTMKFCRECNNILYPKEDKDEKILLYACRNCDHQEVADNNCVYRNEIHHSVGERTQVLQDVAADPTLPRTKAVRCAQCNHGEAVFFQATARGEEGMTLF

Query:  FVCCNPNCGHRWRD
        FVCCNPNCGHRWRD
Subjt:  FVCCNPNCGHRWRD

A0A5A7U5C7 DNA-directed RNA polymerase subunit1.7e-6398.25Show/hide
Query:  MSTMKFCRECNNILYPKEDKDEKILLYACRNCDHQEVADNNCVYRNEIHHSVGERTQVLQDVAADPTLPRTKAVRCAQCNHGEAVFFQATARGEEGMTLF
        MSTMKFCRECNNILYPKED+DEKILLYACRNCDHQEVADNNCVYRNEIHH+VGERTQVLQDVAADPTLPRTKAVRCAQCNHGEAVFFQATARGEEGMTLF
Subjt:  MSTMKFCRECNNILYPKEDKDEKILLYACRNCDHQEVADNNCVYRNEIHHSVGERTQVLQDVAADPTLPRTKAVRCAQCNHGEAVFFQATARGEEGMTLF

Query:  FVCCNPNCGHRWRD
        FVCCNPNCGHRWRD
Subjt:  FVCCNPNCGHRWRD

A0A6J1I879 DNA-directed RNA polymerase subunit1.7e-6398.25Show/hide
Query:  MSTMKFCRECNNILYPKEDKDEKILLYACRNCDHQEVADNNCVYRNEIHHSVGERTQVLQDVAADPTLPRTKAVRCAQCNHGEAVFFQATARGEEGMTLF
        MSTMKFCRECNNILYPKED+DEKILLYACRNCDHQEVADNNCVYRNEIHH+VGERTQVLQDVAADPTLPRTKAVRCAQCNHGEAVFFQATARGEEGMTLF
Subjt:  MSTMKFCRECNNILYPKEDKDEKILLYACRNCDHQEVADNNCVYRNEIHHSVGERTQVLQDVAADPTLPRTKAVRCAQCNHGEAVFFQATARGEEGMTLF

Query:  FVCCNPNCGHRWRD
        FVCCNPNCGHRWRD
Subjt:  FVCCNPNCGHRWRD

A0A7J6EH48 DNA-directed RNA polymerase subunit7.4e-6499.12Show/hide
Query:  MSTMKFCRECNNILYPKEDKDEKILLYACRNCDHQEVADNNCVYRNEIHHSVGERTQVLQDVAADPTLPRTKAVRCAQCNHGEAVFFQATARGEEGMTLF
        MSTMKFCRECNNILYPKED+DEKILLYACRNCDHQEVADNNCVYRNEIHHSVGERTQVLQDVAADPTLPRTKAVRCAQCNHGEAVFFQATARGEEGMTLF
Subjt:  MSTMKFCRECNNILYPKEDKDEKILLYACRNCDHQEVADNNCVYRNEIHHSVGERTQVLQDVAADPTLPRTKAVRCAQCNHGEAVFFQATARGEEGMTLF

Query:  FVCCNPNCGHRWRD
        FVCCNPNCGHRWRD
Subjt:  FVCCNPNCGHRWRD

A0A803R402 Uncharacterized protein7.4e-6499.12Show/hide
Query:  MSTMKFCRECNNILYPKEDKDEKILLYACRNCDHQEVADNNCVYRNEIHHSVGERTQVLQDVAADPTLPRTKAVRCAQCNHGEAVFFQATARGEEGMTLF
        MSTMKFCRECNNILYPKED+DEKILLYACRNCDHQEVADNNCVYRNEIHHSVGERTQVLQDVAADPTLPRTKAVRCAQCNHGEAVFFQATARGEEGMTLF
Subjt:  MSTMKFCRECNNILYPKEDKDEKILLYACRNCDHQEVADNNCVYRNEIHHSVGERTQVLQDVAADPTLPRTKAVRCAQCNHGEAVFFQATARGEEGMTLF

Query:  FVCCNPNCGHRWRD
        FVCCNPNCGHRWRD
Subjt:  FVCCNPNCGHRWRD

SwissProt top hitse value%identityAlignment
P36954 DNA-directed RNA polymerase II subunit RPB91.8e-3859.82Show/hide
Query:  MKFCRECNNILYPKEDKDEKILLYACRNCDHQEVADNNCVYRNEIHHSVGERTQVLQDVAADPTLPRTKAVRCAQCNHGEAVFFQA-TARGEEGMTLFFV
        ++FC+ECNN+LYPKEDK+ +ILLYACRNCD+Q+ ADN+C+Y N+I H V E TQ++ DV+ DPTLPRT+   C +C H EAVFFQ+ +AR E+ M L++V
Subjt:  MKFCRECNNILYPKEDKDEKILLYACRNCDHQEVADNNCVYRNEIHHSVGERTQVLQDVAADPTLPRTKAVRCAQCNHGEAVFFQA-TARGEEGMTLFFV

Query:  CCNPNCGHRWRD
        C  P+CGHRW +
Subjt:  CCNPNCGHRWRD

P60898 DNA-directed RNA polymerase II subunit RPB91.8e-3859.82Show/hide
Query:  MKFCRECNNILYPKEDKDEKILLYACRNCDHQEVADNNCVYRNEIHHSVGERTQVLQDVAADPTLPRTKAVRCAQCNHGEAVFFQA-TARGEEGMTLFFV
        ++FC+ECNN+LYPKEDK+ +ILLYACRNCD+Q+ ADN+C+Y N+I H V E TQ++ DV+ DPTLPRT+   C +C H EAVFFQ+ +AR E+ M L++V
Subjt:  MKFCRECNNILYPKEDKDEKILLYACRNCDHQEVADNNCVYRNEIHHSVGERTQVLQDVAADPTLPRTKAVRCAQCNHGEAVFFQA-TARGEEGMTLFFV

Query:  CCNPNCGHRWRD
        C  P+CGHRW +
Subjt:  CCNPNCGHRWRD

Q32P73 DNA-directed RNA polymerase II subunit RPB91.8e-3859.82Show/hide
Query:  MKFCRECNNILYPKEDKDEKILLYACRNCDHQEVADNNCVYRNEIHHSVGERTQVLQDVAADPTLPRTKAVRCAQCNHGEAVFFQA-TARGEEGMTLFFV
        ++FC+ECNN+LYPKEDK+ +ILLYACRNCD+Q+ ADN+C+Y N+I H V E TQ++ DV+ DPTLPRT+   C +C H EAVFFQ+ +AR E+ M L++V
Subjt:  MKFCRECNNILYPKEDKDEKILLYACRNCDHQEVADNNCVYRNEIHHSVGERTQVLQDVAADPTLPRTKAVRCAQCNHGEAVFFQA-TARGEEGMTLFFV

Query:  CCNPNCGHRWRD
        C  P+CGHRW +
Subjt:  CCNPNCGHRWRD

Q6NLH0 DNA-directed RNA polymerases II, IV and V subunit 9A1.6e-6088.6Show/hide
Query:  MSTMKFCRECNNILYPKEDKDEKILLYACRNCDHQEVADNNCVYRNEIHHSVGERTQVLQDVAADPTLPRTKAVRCAQCNHGEAVFFQATARGEEGMTLF
        MSTMKFCRECNNILYPKEDK++KILLYACRNCDHQEVADN+CVYRNE+HHSV ERTQ+L DVA+DPTLPRTKAVRC++C H EAVFFQATARGEEGMTLF
Subjt:  MSTMKFCRECNNILYPKEDKDEKILLYACRNCDHQEVADNNCVYRNEIHHSVGERTQVLQDVAADPTLPRTKAVRCAQCNHGEAVFFQATARGEEGMTLF

Query:  FVCCNPNCGHRWRD
        FVCCNPNCGHRWR+
Subjt:  FVCCNPNCGHRWRD

Q8L5V0 DNA-directed RNA polymerases II, IV and V subunit 9B2.8e-6087.72Show/hide
Query:  MSTMKFCRECNNILYPKEDKDEKILLYACRNCDHQEVADNNCVYRNEIHHSVGERTQVLQDVAADPTLPRTKAVRCAQCNHGEAVFFQATARGEEGMTLF
        MSTMKFCRECNNILYPKEDK++ ILLYACRNCDHQE ADNNCVYRNE+HHSV E+TQ+L DVA+DPTLPRTKAVRCA+C HGEAVFFQATARGEEGMTLF
Subjt:  MSTMKFCRECNNILYPKEDKDEKILLYACRNCDHQEVADNNCVYRNEIHHSVGERTQVLQDVAADPTLPRTKAVRCAQCNHGEAVFFQATARGEEGMTLF

Query:  FVCCNPNCGHRWRD
        FVCCNPNC HRWR+
Subjt:  FVCCNPNCGHRWRD

Arabidopsis top hitse value%identityAlignment
AT3G16980.1 RNA polymerases M/15 Kd subunit1.2e-6188.6Show/hide
Query:  MSTMKFCRECNNILYPKEDKDEKILLYACRNCDHQEVADNNCVYRNEIHHSVGERTQVLQDVAADPTLPRTKAVRCAQCNHGEAVFFQATARGEEGMTLF
        MSTMKFCRECNNILYPKEDK++KILLYACRNCDHQEVADN+CVYRNE+HHSV ERTQ+L DVA+DPTLPRTKAVRC++C H EAVFFQATARGEEGMTLF
Subjt:  MSTMKFCRECNNILYPKEDKDEKILLYACRNCDHQEVADNNCVYRNEIHHSVGERTQVLQDVAADPTLPRTKAVRCAQCNHGEAVFFQATARGEEGMTLF

Query:  FVCCNPNCGHRWRD
        FVCCNPNCGHRWR+
Subjt:  FVCCNPNCGHRWRD

AT4G16265.1 RNA polymerases M/15 Kd subunit2.0e-6187.72Show/hide
Query:  MSTMKFCRECNNILYPKEDKDEKILLYACRNCDHQEVADNNCVYRNEIHHSVGERTQVLQDVAADPTLPRTKAVRCAQCNHGEAVFFQATARGEEGMTLF
        MSTMKFCRECNNILYPKEDK++ ILLYACRNCDHQE ADNNCVYRNE+HHSV E+TQ+L DVA+DPTLPRTKAVRCA+C HGEAVFFQATARGEEGMTLF
Subjt:  MSTMKFCRECNNILYPKEDKDEKILLYACRNCDHQEVADNNCVYRNEIHHSVGERTQVLQDVAADPTLPRTKAVRCAQCNHGEAVFFQATARGEEGMTLF

Query:  FVCCNPNCGHRWRD
        FVCCNPNC HRWR+
Subjt:  FVCCNPNCGHRWRD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGTACTATGAAGTTTTGCCGAGAATGTAACAACATTCTCTACCCCAAGGAGGACAAGGATGAAAAGATTCTTCTCTATGCGTGTCGCAACTGTGATCATCAGGAAGT
TGCTGACAATAACTGTGTGTATAGGAATGAGATTCATCATTCTGTAGGGGAACGCACTCAAGTTCTGCAAGATGTTGCTGCAGATCCAACTCTCCCTCGCACTAAAGCTG
TTCGATGCGCTCAATGCAACCATGGTGAAGCTGTTTTCTTCCAGGCAACTGCGAGAGGGGAGGAAGGTATGACATTATTCTTCGTTTGCTGCAATCCAAACTGTGGCCAC
AGATGGAGAGATTGA
mRNA sequenceShow/hide mRNA sequence
GTCCAAACATTTCCGGAAACCGCAGCCGATTTGGGATTTTTGGCTTTACTCTTCAAGAAATTTGTTCTTGTTTGAGCTCAGGGTTTCTTCTGCAAGATGAGTACTATGAA
GTTTTGCCGAGAATGTAACAACATTCTCTACCCCAAGGAGGACAAGGATGAAAAGATTCTTCTCTATGCGTGTCGCAACTGTGATCATCAGGAAGTTGCTGACAATAACT
GTGTGTATAGGAATGAGATTCATCATTCTGTAGGGGAACGCACTCAAGTTCTGCAAGATGTTGCTGCAGATCCAACTCTCCCTCGCACTAAAGCTGTTCGATGCGCTCAA
TGCAACCATGGTGAAGCTGTTTTCTTCCAGGCAACTGCGAGAGGGGAGGAAGGTATGACATTATTCTTCGTTTGCTGCAATCCAAACTGTGGCCACAGATGGAGAGATTG
ATATCCAACCCAATGAATATGCAGTCCAGGTGTTTTACTTGCCATGCCATCAATCAAATGTTTTAACCTTCTTTTTCTTTTCTTTTCTTTTTTTTTTGGAAACCGGAAAA
TTGGAGCTTTTTCCCTATACCCGGAGCACTACTCGTCCATCCTTAGACTGTGGCACCAGGATATTTCGAAAGATATTTTAGTTTAAGCGCTTTCCAGTTGCTTTGAACTA
GGGATCTCTTAAGAAAACATGTCTTGAAGTCCTTAGCTTCAACTGTCGGGCTACCCCTTGGGGACAATGTTTTAACTTTCTTATCCTTCTTAAACTTTTTTTTTTTTTTT
CATGGGATGTTCAAATTGAACTGGTTGTTTGTCAGTGAGGACTAATGACTATTGCTATTTATTTAACTTCTCAAGACTTTTAGAGGCCGAATCAATTTTTGGATAACCGG
CCAATCGGAG
Protein sequenceShow/hide protein sequence
MSTMKFCRECNNILYPKEDKDEKILLYACRNCDHQEVADNNCVYRNEIHHSVGERTQVLQDVAADPTLPRTKAVRCAQCNHGEAVFFQATARGEEGMTLFFVCCNPNCGH
RWRD