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Sed0001992 (gene) of Chayote v1 genome

Gene IDSed0001992
OrganismSechium edule (Chayote v1)
DescriptionSquamosa promoter-binding-like protein
Genome locationLG14:23115100..23116782
RNA-Seq ExpressionSed0001992
SyntenySed0001992
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0009908 - flower development (biological process)
GO:0005634 - nucleus (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR004333 - SBP domain
IPR036893 - SBP domain superfamily
IPR044817 - Squamosa promoter-binding-like protein


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6594594.1 Squamosa promoter-binding protein 1, partial [Cucurbita argyrosperma subsp. sororia]1.4e-5076.55Show/hide
Query:  MENYGDQGWGDGVEEDEEE-------NDNEIGFVEDERKKRAVSGGRSGSGGRRSSSVARCQADGCNAELSSAGAYHRRHKVCEIHAKAAVVVLAGFEQR
        ME+ GDQGWG+ VEE+EEE       +D+EIGFV+DERKKRA SG RSGSGG R +SV RCQAD CN +L+ A AYHRRHKVCE H+KAAVV+LAG EQR
Subjt:  MENYGDQGWGDGVEEDEEE-------NDNEIGFVEDERKKRAVSGGRSGSGGRRSSSVARCQADGCNAELSSAGAYHRRHKVCEIHAKAAVVVLAGFEQR

Query:  FCQQCSRFHSVSEFDEAKRSCRRRLAGHNERRRKNLPEFLGQSST
        FCQQCSRFHSVSEFDE KRSCRRRLAGHNERRRKNLP+F GQSST
Subjt:  FCQQCSRFHSVSEFDEAKRSCRRRLAGHNERRRKNLPEFLGQSST

KAG7026565.1 Squamosa promoter-binding protein 1, partial [Cucurbita argyrosperma subsp. argyrosperma]1.1e-5077.08Show/hide
Query:  MENYGDQGWGDGVEEDEEE------NDNEIGFVEDERKKRAVSGGRSGSGGRRSSSVARCQADGCNAELSSAGAYHRRHKVCEIHAKAAVVVLAGFEQRF
        ME+ GDQGWG+ VEE+EEE      +D+EIGFV+DERKKRA SG RSGSGG R +SV RCQAD CN +L+ A AYHRRHKVCE H+KAAVV+LAG EQRF
Subjt:  MENYGDQGWGDGVEEDEEE------NDNEIGFVEDERKKRAVSGGRSGSGGRRSSSVARCQADGCNAELSSAGAYHRRHKVCEIHAKAAVVVLAGFEQRF

Query:  CQQCSRFHSVSEFDEAKRSCRRRLAGHNERRRKNLPEFLGQSST
        CQQCSRFHSVSEFDE KRSCRRRLAGHNERRRKNLP+F GQSST
Subjt:  CQQCSRFHSVSEFDEAKRSCRRRLAGHNERRRKNLPEFLGQSST

XP_022926740.1 squamosa promoter-binding-like protein 3 [Cucurbita moschata]1.1e-5077.08Show/hide
Query:  MENYGDQGWGDGVEEDEEE------NDNEIGFVEDERKKRAVSGGRSGSGGRRSSSVARCQADGCNAELSSAGAYHRRHKVCEIHAKAAVVVLAGFEQRF
        ME+ GDQGWG+ VEE+EEE      +D+EIGFV+DERKKRA SG RSGSGG R +SV RCQAD CN +L+ A AYHRRHKVCE H+KAAVV+LAG EQRF
Subjt:  MENYGDQGWGDGVEEDEEE------NDNEIGFVEDERKKRAVSGGRSGSGGRRSSSVARCQADGCNAELSSAGAYHRRHKVCEIHAKAAVVVLAGFEQRF

Query:  CQQCSRFHSVSEFDEAKRSCRRRLAGHNERRRKNLPEFLGQSST
        CQQCSRFHSVSEFDE KRSCRRRLAGHNERRRKNLP+F GQSST
Subjt:  CQQCSRFHSVSEFDEAKRSCRRRLAGHNERRRKNLPEFLGQSST

XP_023004048.1 squamosa promoter-binding-like protein 3 [Cucurbita maxima]1.1e-5280.28Show/hide
Query:  MENYGDQGWGDGVEEDEEE----NDNEIGFVEDERKKRAVSGGRSGSGGRRSSSVARCQADGCNAELSSAGAYHRRHKVCEIHAKAAVVVLAGFEQRFCQ
        MEN GDQGWGD VEE+EEE    +D+E+GFVEDERKKRAVS  RSGSGG R +SVARCQAD CN +L+ A AYHRRHKVCE H+KAAVV+LAG EQRFCQ
Subjt:  MENYGDQGWGDGVEEDEEE----NDNEIGFVEDERKKRAVSGGRSGSGGRRSSSVARCQADGCNAELSSAGAYHRRHKVCEIHAKAAVVVLAGFEQRFCQ

Query:  QCSRFHSVSEFDEAKRSCRRRLAGHNERRRKNLPEFLGQSST
        QCSRFHSVSEFDE KRSCRRRLAGHNERRRKNLP+F GQSST
Subjt:  QCSRFHSVSEFDEAKRSCRRRLAGHNERRRKNLPEFLGQSST

XP_023518277.1 squamosa promoter-binding-like protein 3 [Cucurbita pepo subsp. pepo]3.1e-5078.72Show/hide
Query:  MENYGDQGWGDGVEEDEEE---NDNEIGFVEDERKKRAVSGGRSGSGGRRSSSVARCQADGCNAELSSAGAYHRRHKVCEIHAKAAVVVLAGFEQRFCQQ
        ME+ GDQGWGD VEE+EEE   +D+EIGFV+DERKKRAVSG RSG GG R +SVARCQAD CN +L+ A AYHRRHKVCE H+KAAVV+LAG EQRFCQQ
Subjt:  MENYGDQGWGDGVEEDEEE---NDNEIGFVEDERKKRAVSGGRSGSGGRRSSSVARCQADGCNAELSSAGAYHRRHKVCEIHAKAAVVVLAGFEQRFCQQ

Query:  CSRFHSVSEFDEAKRSCRRRLAGHNERRRKNLPEFLGQSST
          RFHSVSEFDE KRSCRRRLAGHNERRRKNLP+F GQSST
Subjt:  CSRFHSVSEFDEAKRSCRRRLAGHNERRRKNLPEFLGQSST

TrEMBL top hitse value%identityAlignment
A0A0A0KK74 SBP-type domain-containing protein4.4e-4267.38Show/hide
Query:  MENYGDQGWGDG-VEEDEEENDN-EIGFVEDERKKRAVSGGRSGSGGRRSSSVARCQADGCNAELSSAGAYHRRHKVCEIHAKAAVVVLAGFEQRFCQQC
        M N  DQGW D  V++D+++NDN EIGFV++ER++R+      G GG   S+VARCQADGCNA+L+ A  YHRRHKVCE H++AAVV+LAG EQRFCQQC
Subjt:  MENYGDQGWGDG-VEEDEEENDN-EIGFVEDERKKRAVSGGRSGSGGRRSSSVARCQADGCNAELSSAGAYHRRHKVCEIHAKAAVVVLAGFEQRFCQQC

Query:  SRFHSVSEFDEAKRSCRRRLAGHNERRRKNLPEFLGQSSTN
        SRFH++SEFD+ KRSCR RLAGHNERRRK LP+F GQSSTN
Subjt:  SRFHSVSEFDEAKRSCRRRLAGHNERRRKNLPEFLGQSSTN

A0A1S3AZN8 squamosa promoter-binding protein 12.0e-4267.13Show/hide
Query:  MENYGDQGWGDGVEEDEEENDN---EIGFVEDERKKRA-VSGGRSGSGGRRSSSVARCQADGCNAELSSAGAYHRRHKVCEIHAKAAVVVLAGFEQRFCQ
        M N  D  W D + +D++++DN   E+GFV++ER++R+ ++ GR G GG R S+VARCQADGCNA+L+ A  YHRRHKVCE HAKAAVV+LAG EQRFCQ
Subjt:  MENYGDQGWGDGVEEDEEENDN---EIGFVEDERKKRA-VSGGRSGSGGRRSSSVARCQADGCNAELSSAGAYHRRHKVCEIHAKAAVVVLAGFEQRFCQ

Query:  QCSRFHSVSEFDEAKRSCRRRLAGHNERRRKNLPEFLGQSSTN
        QCSRFH+VSEFD+ KRSCR RLAGHNERRRK LP+F GQSSTN
Subjt:  QCSRFHSVSEFDEAKRSCRRRLAGHNERRRKNLPEFLGQSSTN

A0A6J1CK81 squamosa promoter-binding protein 11.4e-4072.66Show/hide
Query:  WGDGVEEDEEEND------NEIGFVEDERK-KRAVSGGRSGSGGRRSSSVARCQADGCNAELSSAGAYHRRHKVCEIHAKAAVVVLAGFEQRFCQQCSRF
        WG   EEDEEE +       E+GF E+ERK +RA+SGGR G  GR  S+VARCQADGCNA+LS A  YHRRHKVCE HAKAAVV+LAG EQRFCQQCSRF
Subjt:  WGDGVEEDEEEND------NEIGFVEDERK-KRAVSGGRSGSGGRRSSSVARCQADGCNAELSSAGAYHRRHKVCEIHAKAAVVVLAGFEQRFCQQCSRF

Query:  HSVSEFDEAKRSCRRRLAGHNERRRKNL-PEFL-GQSST
        H+VSEFDE KRSCRRRLAGHNERRRK+L  EF  GQSST
Subjt:  HSVSEFDEAKRSCRRRLAGHNERRRKNL-PEFL-GQSST

A0A6J1EFR3 Squamosa promoter-binding-like protein5.1e-5177.08Show/hide
Query:  MENYGDQGWGDGVEEDEEE------NDNEIGFVEDERKKRAVSGGRSGSGGRRSSSVARCQADGCNAELSSAGAYHRRHKVCEIHAKAAVVVLAGFEQRF
        ME+ GDQGWG+ VEE+EEE      +D+EIGFV+DERKKRA SG RSGSGG R +SV RCQAD CN +L+ A AYHRRHKVCE H+KAAVV+LAG EQRF
Subjt:  MENYGDQGWGDGVEEDEEE------NDNEIGFVEDERKKRAVSGGRSGSGGRRSSSVARCQADGCNAELSSAGAYHRRHKVCEIHAKAAVVVLAGFEQRF

Query:  CQQCSRFHSVSEFDEAKRSCRRRLAGHNERRRKNLPEFLGQSST
        CQQCSRFHSVSEFDE KRSCRRRLAGHNERRRKNLP+F GQSST
Subjt:  CQQCSRFHSVSEFDEAKRSCRRRLAGHNERRRKNLPEFLGQSST

A0A6J1KYC6 Squamosa promoter-binding-like protein5.5e-5380.28Show/hide
Query:  MENYGDQGWGDGVEEDEEE----NDNEIGFVEDERKKRAVSGGRSGSGGRRSSSVARCQADGCNAELSSAGAYHRRHKVCEIHAKAAVVVLAGFEQRFCQ
        MEN GDQGWGD VEE+EEE    +D+E+GFVEDERKKRAVS  RSGSGG R +SVARCQAD CN +L+ A AYHRRHKVCE H+KAAVV+LAG EQRFCQ
Subjt:  MENYGDQGWGDGVEEDEEE----NDNEIGFVEDERKKRAVSGGRSGSGGRRSSSVARCQADGCNAELSSAGAYHRRHKVCEIHAKAAVVVLAGFEQRFCQ

Query:  QCSRFHSVSEFDEAKRSCRRRLAGHNERRRKNLPEFLGQSST
        QCSRFHSVSEFDE KRSCRRRLAGHNERRRKNLP+F GQSST
Subjt:  QCSRFHSVSEFDEAKRSCRRRLAGHNERRRKNLPEFLGQSST

SwissProt top hitse value%identityAlignment
P93015 Squamosa promoter-binding-like protein 33.8e-2756.52Show/hide
Query:  EEDEEENDNEIGFVEDERKKRAVSGGRSGSGGRRSSSVARCQADGCNAELSSAGAYHRRHKVCEIHAKAAVVVLAGFEQRFCQQCSRFHSVSEFDEAKRS
        EE+EEE ++E  F E+E  ++          G+ +SS   CQ + C A++S A  YH+RHKVC+ HAKA  V ++G  QRFCQQCSRFH++SEFDEAKRS
Subjt:  EEDEEENDNEIGFVEDERKKRAVSGGRSGSGGRRSSSVARCQADGCNAELSSAGAYHRRHKVCEIHAKAAVVVLAGFEQRFCQQCSRFHSVSEFDEAKRS

Query:  CRRRLAGHNERRRKN
        CRRRLAGHNERRRK+
Subjt:  CRRRLAGHNERRRKN

Q0E3F8 Squamosa promoter-binding-like protein 58.5e-2770.59Show/hide
Query:  RCQADGCNAELSSAGAYHRRHKVCEIHAKAAVVVLAGFEQRFCQQCSRFHSVSEFDEAKRSCRRRLAGHNERRRKNLPEFLGQSS
        RCQA+GC A+LS+A  YHRRHKVC+ HAKAA V+ AG +QRFCQQCSRFH ++EFDEAKRSCR+RL  HN RRRK  P   GQSS
Subjt:  RCQADGCNAELSSAGAYHRRHKVCEIHAKAAVVVLAGFEQRFCQQCSRFHSVSEFDEAKRSCRRRLAGHNERRRKNLPEFLGQSS

Q38741 Squamosa promoter-binding protein 12.6e-2862.71Show/hide
Query:  GVEEDEEENDNEIGFVEDERKKRAVSGGRSGSGGRRSSSVAR-CQADGCNAELSSAGAYHRRHKVCEIHAKAAVVVLAGFEQRFCQQCSRFHSVSEFDEA
        G +E  EE D +IG  ED +K RA+    + SG R S S  R CQ + C AE+++A  YHRRHKVCE HAKA VV+ +G +QRFCQQCSRFH +SEFDEA
Subjt:  GVEEDEEENDNEIGFVEDERKKRAVSGGRSGSGGRRSSSVAR-CQADGCNAELSSAGAYHRRHKVCEIHAKAAVVVLAGFEQRFCQQCSRFHSVSEFDEA

Query:  KRSCRRRLAGHNERRRKN
        KRSCRRRLAGHNERRRK+
Subjt:  KRSCRRRLAGHNERRRKN

Q8GXL3 Squamosa promoter-binding-like protein 81.9e-2662.38Show/hide
Query:  EDERKKRAVSGGRSGSGGRRSS-SVARCQADGCNAELSSAGAYHRRHKVCEIHAKAAVVVLAGFEQRFCQQCSRFHSVSEFDEAKRSCRRRLAGHNERRR
        +D+   R     R G  G  +S S  RCQA+GCNA+LS A  YHRRHKVCE H+KA+ VV AG  QRFCQQCSRFH +SEFD  KRSCR+RLA HN RRR
Subjt:  EDERKKRAVSGGRSGSGGRRSS-SVARCQADGCNAELSSAGAYHRRHKVCEIHAKAAVVVLAGFEQRFCQQCSRFHSVSEFDEAKRSCRRRLAGHNERRR

Query:  K
        K
Subjt:  K

Q9S7A9 Squamosa promoter-binding-like protein 46.5e-2757.98Show/hide
Query:  VEEDEEENDNEIGFVEDERKKRAVSGGRSGSGGRRSSSVARCQADGCNAELSSAGAYHRRHKVCEIHAKAAVVVLAGFEQRFCQQCSRFHSVSEFDEAKR
        VEED E + +E    E+E  +  V G R      R  S+  CQ D C A++  A  YHRRHKVCE+HAKA+ V L+G  QRFCQQCSRFH + EFDEAKR
Subjt:  VEEDEEENDNEIGFVEDERKKRAVSGGRSGSGGRRSSSVARCQADGCNAELSSAGAYHRRHKVCEIHAKAAVVVLAGFEQRFCQQCSRFHSVSEFDEAKR

Query:  SCRRRLAGHNERRRKNLPE
        SCRRRLAGHNERRRK+  E
Subjt:  SCRRRLAGHNERRRKNLPE

Arabidopsis top hitse value%identityAlignment
AT1G02065.1 squamosa promoter binding protein-like 81.3e-2762.38Show/hide
Query:  EDERKKRAVSGGRSGSGGRRSS-SVARCQADGCNAELSSAGAYHRRHKVCEIHAKAAVVVLAGFEQRFCQQCSRFHSVSEFDEAKRSCRRRLAGHNERRR
        +D+   R     R G  G  +S S  RCQA+GCNA+LS A  YHRRHKVCE H+KA+ VV AG  QRFCQQCSRFH +SEFD  KRSCR+RLA HN RRR
Subjt:  EDERKKRAVSGGRSGSGGRRSS-SVARCQADGCNAELSSAGAYHRRHKVCEIHAKAAVVVLAGFEQRFCQQCSRFHSVSEFDEAKRSCRRRLAGHNERRR

Query:  K
        K
Subjt:  K

AT1G53160.1 squamosa promoter binding protein-like 44.6e-2857.98Show/hide
Query:  VEEDEEENDNEIGFVEDERKKRAVSGGRSGSGGRRSSSVARCQADGCNAELSSAGAYHRRHKVCEIHAKAAVVVLAGFEQRFCQQCSRFHSVSEFDEAKR
        VEED E + +E    E+E  +  V G R      R  S+  CQ D C A++  A  YHRRHKVCE+HAKA+ V L+G  QRFCQQCSRFH + EFDEAKR
Subjt:  VEEDEEENDNEIGFVEDERKKRAVSGGRSGSGGRRSSSVARCQADGCNAELSSAGAYHRRHKVCEIHAKAAVVVLAGFEQRFCQQCSRFHSVSEFDEAKR

Query:  SCRRRLAGHNERRRKNLPE
        SCRRRLAGHNERRRK+  E
Subjt:  SCRRRLAGHNERRRKNLPE

AT1G53160.2 squamosa promoter binding protein-like 44.6e-2857.98Show/hide
Query:  VEEDEEENDNEIGFVEDERKKRAVSGGRSGSGGRRSSSVARCQADGCNAELSSAGAYHRRHKVCEIHAKAAVVVLAGFEQRFCQQCSRFHSVSEFDEAKR
        VEED E + +E    E+E  +  V G R      R  S+  CQ D C A++  A  YHRRHKVCE+HAKA+ V L+G  QRFCQQCSRFH + EFDEAKR
Subjt:  VEEDEEENDNEIGFVEDERKKRAVSGGRSGSGGRRSSSVARCQADGCNAELSSAGAYHRRHKVCEIHAKAAVVVLAGFEQRFCQQCSRFHSVSEFDEAKR

Query:  SCRRRLAGHNERRRKNLPE
        SCRRRLAGHNERRRK+  E
Subjt:  SCRRRLAGHNERRRKNLPE

AT2G33810.1 squamosa promoter binding protein-like 32.7e-2856.52Show/hide
Query:  EEDEEENDNEIGFVEDERKKRAVSGGRSGSGGRRSSSVARCQADGCNAELSSAGAYHRRHKVCEIHAKAAVVVLAGFEQRFCQQCSRFHSVSEFDEAKRS
        EE+EEE ++E  F E+E  ++          G+ +SS   CQ + C A++S A  YH+RHKVC+ HAKA  V ++G  QRFCQQCSRFH++SEFDEAKRS
Subjt:  EEDEEENDNEIGFVEDERKKRAVSGGRSGSGGRRSSSVARCQADGCNAELSSAGAYHRRHKVCEIHAKAAVVVLAGFEQRFCQQCSRFHSVSEFDEAKRS

Query:  CRRRLAGHNERRRKN
        CRRRLAGHNERRRK+
Subjt:  CRRRLAGHNERRRKN

AT3G60030.1 squamosa promoter-binding protein-like 123.0e-2760Show/hide
Query:  GGRRSSSVARCQADGCNAELSSAGAYHRRHKVCEIHAKAAVVVLAGFEQRFCQQCSRFHSVSEFDEAKRSCRRRLAGHNERRRKNLPEFLGQSST
        GG   S    CQ D C A+LS    YHRRHKVCEIH+KA   ++ G  QRFCQQCSRFH + EFDE KRSCRRRLAGHN+RRRK  P+ +G  ++
Subjt:  GGRRSSSVARCQADGCNAELSSAGAYHRRHKVCEIHAKAAVVVLAGFEQRFCQQCSRFHSVSEFDEAKRSCRRRLAGHNERRRKNLPEFLGQSST


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGAATTATGGAGATCAAGGTTGGGGGGACGGTGTGGAGGAAGACGAAGAAGAAAACGACAACGAAATAGGGTTCGTAGAAGATGAGAGGAAGAAGAGAGCTGTAAG
CGGTGGTCGAAGTGGCAGCGGAGGAAGAAGGTCGTCATCGGTGGCGCGTTGCCAAGCCGATGGCTGCAATGCTGAGCTGAGCAGTGCCGGAGCATACCACCGCCGCCACA
AGGTATGCGAGATCCATGCCAAGGCGGCCGTGGTAGTTTTGGCCGGATTCGAGCAGCGCTTTTGCCAGCAGTGTAGTAGGTTTCATTCTGTATCAGAGTTCGATGAGGCA
AAAAGAAGCTGCCGGAGGCGGTTGGCCGGCCACAATGAACGGCGGCGAAAAAACTTACCGGAGTTCCTGGGACAATCCTCCACTAATTAA
mRNA sequenceShow/hide mRNA sequence
GAAAAATGGAGAATTATGGAGATCAAGGTTGGGGGGACGGTGTGGAGGAAGACGAAGAAGAAAACGACAACGAAATAGGGTTCGTAGAAGATGAGAGGAAGAAGAGAGCT
GTAAGCGGTGGTCGAAGTGGCAGCGGAGGAAGAAGGTCGTCATCGGTGGCGCGTTGCCAAGCCGATGGCTGCAATGCTGAGCTGAGCAGTGCCGGAGCATACCACCGCCG
CCACAAGGTATGCGAGATCCATGCCAAGGCGGCCGTGGTAGTTTTGGCCGGATTCGAGCAGCGCTTTTGCCAGCAGTGTAGTAGGTTTCATTCTGTATCAGAGTTCGATG
AGGCAAAAAGAAGCTGCCGGAGGCGGTTGGCCGGCCACAATGAACGGCGGCGAAAAAACTTACCGGAGTTCCTGGGACAATCCTCCACTAATTAA
Protein sequenceShow/hide protein sequence
MENYGDQGWGDGVEEDEEENDNEIGFVEDERKKRAVSGGRSGSGGRRSSSVARCQADGCNAELSSAGAYHRRHKVCEIHAKAAVVVLAGFEQRFCQQCSRFHSVSEFDEA
KRSCRRRLAGHNERRRKNLPEFLGQSSTN