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Sed0001997 (gene) of Chayote v1 genome

Gene IDSed0001997
OrganismSechium edule (Chayote v1)
DescriptionPre-mRNA-splicing factor 38
Genome locationLG03:5556906..5558771
RNA-Seq ExpressionSed0001997
SyntenySed0001997
Gene Ontology termsGO:0000398 - mRNA splicing, via spliceosome (biological process)
GO:0035435 - phosphate ion transmembrane transport (biological process)
GO:0016020 - membrane (cellular component)
GO:0071011 - precatalytic spliceosome (cellular component)
GO:0005315 - inorganic phosphate transmembrane transporter activity (molecular function)
GO:0005524 - ATP binding (molecular function)
InterPro domainsIPR005037 - Pre-mRNA-splicing factor 38


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TYK18924.1 pre-mRNA-splicing factor 38B [Cucumis melo var. makuwa]5.7e-5094.12Show/hide
Query:  MEIKTCGKPIDSLLEKVLCMNILSSDYFKELYRLKTYHEVVDEIYNQVDHVEPWMTGNCRGPSTSFCLLYKFFTMKLTVKQMHGLLKHEDSPYIRAVAAA
        MEIKTCGKPIDSLLEKVLCMNILSSDYFKELYRLKTYHEVVDEIYNQVDHVEPWMTGNCRGPST+FCLLYKFFTMKLTVKQMHGLLKHEDSPYIRA+   
Subjt:  MEIKTCGKPIDSLLEKVLCMNILSSDYFKELYRLKTYHEVVDEIYNQVDHVEPWMTGNCRGPSTSFCLLYKFFTMKLTVKQMHGLLKHEDSPYIRAVAAA

Query:  FL
        +L
Subjt:  FL

XP_008463144.1 PREDICTED: pre-mRNA-splicing factor 38B [Cucumis melo]5.7e-5094.12Show/hide
Query:  MEIKTCGKPIDSLLEKVLCMNILSSDYFKELYRLKTYHEVVDEIYNQVDHVEPWMTGNCRGPSTSFCLLYKFFTMKLTVKQMHGLLKHEDSPYIRAVAAA
        MEIKTCGKPIDSLLEKVLCMNILSSDYFKELYRLKTYHEVVDEIYNQVDHVEPWMTGNCRGPST+FCLLYKFFTMKLTVKQMHGLLKHEDSPYIRA+   
Subjt:  MEIKTCGKPIDSLLEKVLCMNILSSDYFKELYRLKTYHEVVDEIYNQVDHVEPWMTGNCRGPSTSFCLLYKFFTMKLTVKQMHGLLKHEDSPYIRAVAAA

Query:  FL
        +L
Subjt:  FL

XP_022938827.1 pre-mRNA splicing factor SR-like 1 [Cucurbita moschata]5.7e-5094.12Show/hide
Query:  MEIKTCGKPIDSLLEKVLCMNILSSDYFKELYRLKTYHEVVDEIYNQVDHVEPWMTGNCRGPSTSFCLLYKFFTMKLTVKQMHGLLKHEDSPYIRAVAAA
        MEIKTCGKPIDSLLEKVLCMNILSSDYFKELYRLKTYHEVVDEIYNQVDHVEPWMTGNCRGPST+FCLLYKFFTMKLTVKQMHGLLKHEDSPYIRA+   
Subjt:  MEIKTCGKPIDSLLEKVLCMNILSSDYFKELYRLKTYHEVVDEIYNQVDHVEPWMTGNCRGPSTSFCLLYKFFTMKLTVKQMHGLLKHEDSPYIRAVAAA

Query:  FL
        +L
Subjt:  FL

XP_022993767.1 pre-mRNA splicing factor SR-like 1 [Cucurbita maxima]5.7e-5094.12Show/hide
Query:  MEIKTCGKPIDSLLEKVLCMNILSSDYFKELYRLKTYHEVVDEIYNQVDHVEPWMTGNCRGPSTSFCLLYKFFTMKLTVKQMHGLLKHEDSPYIRAVAAA
        MEIKTCGKPIDSLLEKVLCMNILSSDYFKELYRLKTYHEVVDEIYNQVDHVEPWMTGNCRGPST+FCLLYKFFTMKLTVKQMHGLLKHEDSPYIRA+   
Subjt:  MEIKTCGKPIDSLLEKVLCMNILSSDYFKELYRLKTYHEVVDEIYNQVDHVEPWMTGNCRGPSTSFCLLYKFFTMKLTVKQMHGLLKHEDSPYIRAVAAA

Query:  FL
        +L
Subjt:  FL

XP_023550341.1 pre-mRNA splicing factor SR-like 1 [Cucurbita pepo subsp. pepo]5.7e-5094.12Show/hide
Query:  MEIKTCGKPIDSLLEKVLCMNILSSDYFKELYRLKTYHEVVDEIYNQVDHVEPWMTGNCRGPSTSFCLLYKFFTMKLTVKQMHGLLKHEDSPYIRAVAAA
        MEIKTCGKPIDSLLEKVLCMNILSSDYFKELYRLKTYHEVVDEIYNQVDHVEPWMTGNCRGPST+FCLLYKFFTMKLTVKQMHGLLKHEDSPYIRA+   
Subjt:  MEIKTCGKPIDSLLEKVLCMNILSSDYFKELYRLKTYHEVVDEIYNQVDHVEPWMTGNCRGPSTSFCLLYKFFTMKLTVKQMHGLLKHEDSPYIRAVAAA

Query:  FL
        +L
Subjt:  FL

TrEMBL top hitse value%identityAlignment
A0A1S3CIJ0 Pre-mRNA-splicing factor 382.8e-5094.12Show/hide
Query:  MEIKTCGKPIDSLLEKVLCMNILSSDYFKELYRLKTYHEVVDEIYNQVDHVEPWMTGNCRGPSTSFCLLYKFFTMKLTVKQMHGLLKHEDSPYIRAVAAA
        MEIKTCGKPIDSLLEKVLCMNILSSDYFKELYRLKTYHEVVDEIYNQVDHVEPWMTGNCRGPST+FCLLYKFFTMKLTVKQMHGLLKHEDSPYIRA+   
Subjt:  MEIKTCGKPIDSLLEKVLCMNILSSDYFKELYRLKTYHEVVDEIYNQVDHVEPWMTGNCRGPSTSFCLLYKFFTMKLTVKQMHGLLKHEDSPYIRAVAAA

Query:  FL
        +L
Subjt:  FL

A0A5A7TWJ6 Pre-mRNA-splicing factor 382.8e-5094.12Show/hide
Query:  MEIKTCGKPIDSLLEKVLCMNILSSDYFKELYRLKTYHEVVDEIYNQVDHVEPWMTGNCRGPSTSFCLLYKFFTMKLTVKQMHGLLKHEDSPYIRAVAAA
        MEIKTCGKPIDSLLEKVLCMNILSSDYFKELYRLKTYHEVVDEIYNQVDHVEPWMTGNCRGPST+FCLLYKFFTMKLTVKQMHGLLKHEDSPYIRA+   
Subjt:  MEIKTCGKPIDSLLEKVLCMNILSSDYFKELYRLKTYHEVVDEIYNQVDHVEPWMTGNCRGPSTSFCLLYKFFTMKLTVKQMHGLLKHEDSPYIRAVAAA

Query:  FL
        +L
Subjt:  FL

A0A5D3D5T6 Pre-mRNA-splicing factor 382.8e-5094.12Show/hide
Query:  MEIKTCGKPIDSLLEKVLCMNILSSDYFKELYRLKTYHEVVDEIYNQVDHVEPWMTGNCRGPSTSFCLLYKFFTMKLTVKQMHGLLKHEDSPYIRAVAAA
        MEIKTCGKPIDSLLEKVLCMNILSSDYFKELYRLKTYHEVVDEIYNQVDHVEPWMTGNCRGPST+FCLLYKFFTMKLTVKQMHGLLKHEDSPYIRA+   
Subjt:  MEIKTCGKPIDSLLEKVLCMNILSSDYFKELYRLKTYHEVVDEIYNQVDHVEPWMTGNCRGPSTSFCLLYKFFTMKLTVKQMHGLLKHEDSPYIRAVAAA

Query:  FL
        +L
Subjt:  FL

A0A6J1CK04 Pre-mRNA-splicing factor 382.8e-5094.12Show/hide
Query:  MEIKTCGKPIDSLLEKVLCMNILSSDYFKELYRLKTYHEVVDEIYNQVDHVEPWMTGNCRGPSTSFCLLYKFFTMKLTVKQMHGLLKHEDSPYIRAVAAA
        MEIKTCGKPIDSLLEKVLCMNILSSDYFKELYRLKTYHEVVDEIYNQVDHVEPWMTGNCRGPST+FCLLYKFFTMKLTVKQMHGLLKHEDSPYIRA+   
Subjt:  MEIKTCGKPIDSLLEKVLCMNILSSDYFKELYRLKTYHEVVDEIYNQVDHVEPWMTGNCRGPSTSFCLLYKFFTMKLTVKQMHGLLKHEDSPYIRAVAAA

Query:  FL
        +L
Subjt:  FL

A0A6J1JTS5 Pre-mRNA-splicing factor 382.8e-5094.12Show/hide
Query:  MEIKTCGKPIDSLLEKVLCMNILSSDYFKELYRLKTYHEVVDEIYNQVDHVEPWMTGNCRGPSTSFCLLYKFFTMKLTVKQMHGLLKHEDSPYIRAVAAA
        MEIKTCGKPIDSLLEKVLCMNILSSDYFKELYRLKTYHEVVDEIYNQVDHVEPWMTGNCRGPST+FCLLYKFFTMKLTVKQMHGLLKHEDSPYIRA+   
Subjt:  MEIKTCGKPIDSLLEKVLCMNILSSDYFKELYRLKTYHEVVDEIYNQVDHVEPWMTGNCRGPSTSFCLLYKFFTMKLTVKQMHGLLKHEDSPYIRAVAAA

Query:  FL
        +L
Subjt:  FL

SwissProt top hitse value%identityAlignment
Q5VTL8 Pre-mRNA-splicing factor 38B5.2e-2253.7Show/hide
Query:  LEKVLCMNILSSDYFK-ELYRLKTYHEVVDEIYNQVDHVEPW---------MTGNCRG---------PSTSFCLLYKFFTMKLTVKQMHGLLKHEDSPYI
        L  ++  NILSS YFK +LY LKTYHEVVDEIY +V HVEPW          TG C G          ST+FCLLYK FT+KLT KQ+ GL+ H DSPYI
Subjt:  LEKVLCMNILSSDYFK-ELYRLKTYHEVVDEIYNQVDHVEPW---------MTGNCRG---------PSTSFCLLYKFFTMKLTVKQMHGLLKHEDSPYI

Query:  RAVAAAFL
        RA+   ++
Subjt:  RAVAAAFL

Q6AXY7 Pre-mRNA-splicing factor 38B5.2e-2253.7Show/hide
Query:  LEKVLCMNILSSDYFK-ELYRLKTYHEVVDEIYNQVDHVEPW---------MTGNCRG---------PSTSFCLLYKFFTMKLTVKQMHGLLKHEDSPYI
        L  ++  NILSS YFK +LY LKTYHEVVDEIY +V HVEPW          TG C G          ST+FCLLYK FT+KLT KQ+ GL+ H DSPYI
Subjt:  LEKVLCMNILSSDYFK-ELYRLKTYHEVVDEIYNQVDHVEPW---------MTGNCRG---------PSTSFCLLYKFFTMKLTVKQMHGLLKHEDSPYI

Query:  RAVAAAFL
        RA+   ++
Subjt:  RAVAAAFL

Q6P7Y3 Pre-mRNA-splicing factor 38B4.4e-2151.85Show/hide
Query:  LEKVLCMNILSSDYFK-ELYRLKTYHEVVDEIYNQVDHVEPW---------MTGNCRG---------PSTSFCLLYKFFTMKLTVKQMHGLLKHEDSPYI
        L  ++  N+LSS YFK +LY LKTYHEVVDEIY +V+HVEPW          TG C G          ST+FCLLYK FT+KLT KQ+ GL+ H DSP I
Subjt:  LEKVLCMNILSSDYFK-ELYRLKTYHEVVDEIYNQVDHVEPW---------MTGNCRG---------PSTSFCLLYKFFTMKLTVKQMHGLLKHEDSPYI

Query:  RAVAAAFL
        RA+   ++
Subjt:  RAVAAAFL

Q80SY5 Pre-mRNA-splicing factor 38B5.2e-2253.7Show/hide
Query:  LEKVLCMNILSSDYFK-ELYRLKTYHEVVDEIYNQVDHVEPW---------MTGNCRG---------PSTSFCLLYKFFTMKLTVKQMHGLLKHEDSPYI
        L  ++  NILSS YFK +LY LKTYHEVVDEIY +V HVEPW          TG C G          ST+FCLLYK FT+KLT KQ+ GL+ H DSPYI
Subjt:  LEKVLCMNILSSDYFK-ELYRLKTYHEVVDEIYNQVDHVEPW---------MTGNCRG---------PSTSFCLLYKFFTMKLTVKQMHGLLKHEDSPYI

Query:  RAVAAAFL
        RA+   ++
Subjt:  RAVAAAFL

Q8RWB1 Pre-mRNA splicing factor SR-like 12.4e-4381.19Show/hide
Query:  EIKTCGKPIDSLLEKVLCMNILSSDYFKELYRLKTYHEVVDEIYNQVDHVEPWMTGNCRGPSTSFCLLYKFFTMKLTVKQMHGLLKHEDSPYIRAVAAAF
        EI++ G+  +SLLEKVL MNILSSDYFKELY LKTYHEV+DEIYNQV+HVEPWM GNCRGPST++CLLYKFFTMKLTVKQMHGLLKH DSPYIRAV   +
Subjt:  EIKTCGKPIDSLLEKVLCMNILSSDYFKELYRLKTYHEVVDEIYNQVDHVEPWMTGNCRGPSTSFCLLYKFFTMKLTVKQMHGLLKHEDSPYIRAVAAAF

Query:  L
        L
Subjt:  L

Arabidopsis top hitse value%identityAlignment
AT5G37370.1 PRP38 family protein1.7e-4481.19Show/hide
Query:  EIKTCGKPIDSLLEKVLCMNILSSDYFKELYRLKTYHEVVDEIYNQVDHVEPWMTGNCRGPSTSFCLLYKFFTMKLTVKQMHGLLKHEDSPYIRAVAAAF
        EI++ G+  +SLLEKVL MNILSSDYFKELY LKTYHEV+DEIYNQV+HVEPWM GNCRGPST++CLLYKFFTMKLTVKQMHGLLKH DSPYIRAV   +
Subjt:  EIKTCGKPIDSLLEKVLCMNILSSDYFKELYRLKTYHEVVDEIYNQVDHVEPWMTGNCRGPSTSFCLLYKFFTMKLTVKQMHGLLKHEDSPYIRAVAAAF

Query:  L
        L
Subjt:  L

AT5G37370.2 PRP38 family protein1.7e-4481.19Show/hide
Query:  EIKTCGKPIDSLLEKVLCMNILSSDYFKELYRLKTYHEVVDEIYNQVDHVEPWMTGNCRGPSTSFCLLYKFFTMKLTVKQMHGLLKHEDSPYIRAVAAAF
        EI++ G+  +SLLEKVL MNILSSDYFKELY LKTYHEV+DEIYNQV+HVEPWM GNCRGPST++CLLYKFFTMKLTVKQMHGLLKH DSPYIRAV   +
Subjt:  EIKTCGKPIDSLLEKVLCMNILSSDYFKELYRLKTYHEVVDEIYNQVDHVEPWMTGNCRGPSTSFCLLYKFFTMKLTVKQMHGLLKHEDSPYIRAVAAAF

Query:  L
        L
Subjt:  L

AT5G37370.3 PRP38 family protein5.0e-4483.33Show/hide
Query:  EIKTCGKPIDSLLEKVLCMNILSSDYFKELYRLKTYHEVVDEIYNQVDHVEPWMTGNCRGPSTSFCLLYKFFTMKLTVKQMHGLLKHEDSPYIRAV
        EI++ G+  +SLLEKVL MNILSSDYFKELY LKTYHEV+DEIYNQV+HVEPWM GNCRGPST++CLLYKFFTMKLTVKQMHGLLKH DSPYIRA+
Subjt:  EIKTCGKPIDSLLEKVLCMNILSSDYFKELYRLKTYHEVVDEIYNQVDHVEPWMTGNCRGPSTSFCLLYKFFTMKLTVKQMHGLLKHEDSPYIRAV

AT5G37370.4 PRP38 family protein2.1e-1883.33Show/hide
Query:  MTGNCRGPSTSFCLLYKFFTMKLTVKQMHGLLKHEDSPYIRAVAAAFL
        M GNCRGPST++CLLYKFFTMKLTVKQMHGLLKH DSPYIRAV   +L
Subjt:  MTGNCRGPSTSFCLLYKFFTMKLTVKQMHGLLKHEDSPYIRAVAAAFL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGATAAAGACTTGCGGGAAGCCAATTGATTCTTTGCTGGAGAAGGTTCTATGTATGAATATTCTGTCTTCTGATTACTTTAAGGAGCTTTATCGTTTGAAGACATA
CCATGAAGTGGTTGATGAAATTTATAACCAAGTTGATCACGTGGAGCCATGGATGACTGGGAACTGCCGTGGTCCTTCAACATCATTCTGTCTTCTGTATAAGTTTTTCA
CCATGAAACTTACTGTGAAGCAAATGCACGGGCTGTTGAAGCATGAGGATTCTCCTTACATCAGAGCGGTAGCTGCCGCCTTCTTGTTTGCGGTAATAGCCATGATACAT
GGGCCATTTTTTGCTAACCAAGAAGCAAGGAGAGGTAAGAGAAGAGCTGGATCAAAATCCATTTCTTCTTCCAACTCTATCTCTGCCGAAGAATTTGATCTATCCATTTC
CTTGTGGAGTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGAGATAAAGACTTGCGGGAAGCCAATTGATTCTTTGCTGGAGAAGGTTCTATGTATGAATATTCTGTCTTCTGATTACTTTAAGGAGCTTTATCGTTTGAAGACATA
CCATGAAGTGGTTGATGAAATTTATAACCAAGTTGATCACGTGGAGCCATGGATGACTGGGAACTGCCGTGGTCCTTCAACATCATTCTGTCTTCTGTATAAGTTTTTCA
CCATGAAACTTACTGTGAAGCAAATGCACGGGCTGTTGAAGCATGAGGATTCTCCTTACATCAGAGCGGTAGCTGCCGCCTTCTTGTTTGCGGTAATAGCCATGATACAT
GGGCCATTTTTTGCTAACCAAGAAGCAAGGAGAGGTAAGAGAAGAGCTGGATCAAAATCCATTTCTTCTTCCAACTCTATCTCTGCCGAAGAATTTGATCTATCCATTTC
CTTGTGGAGTTGA
Protein sequenceShow/hide protein sequence
MEIKTCGKPIDSLLEKVLCMNILSSDYFKELYRLKTYHEVVDEIYNQVDHVEPWMTGNCRGPSTSFCLLYKFFTMKLTVKQMHGLLKHEDSPYIRAVAAAFLFAVIAMIH
GPFFANQEARRGKRRAGSKSISSSNSISAEEFDLSISLWS