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Sed0002064 (gene) of Chayote v1 genome

Gene IDSed0002064
OrganismSechium edule (Chayote v1)
Description60S acidic ribosomal protein family
Genome locationLG05:19803173..19803733
RNA-Seq ExpressionSed0002064
SyntenySed0002064
Gene Ontology termsGO:0002182 - cytoplasmic translational elongation (biological process)
GO:0022625 - cytosolic large ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR027534 - Ribosomal protein L12/P1/P2 family
IPR038716 - Ribosomal protein P1/P2, N-terminal domain
IPR044076 - Ribosomal protein P2


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6570492.1 60S acidic ribosomal protein P2B, partial [Cucurbita argyrosperma subsp. sororia]5.7e-4288.7Show/hide
Query:  MKVVAAYLLAVLGGNTSPGLDDVNNILNSVGAEVDADRIDSLLSQLKGRDITELIASGREKLASVPSGGSAVAVSAPAGGASGGGAAP-AADPKKEEKVE
        MKVVAAYLLAVLGGNTSPGLDDV  ILNSVGAEVD DRIDSLLSQ+KG+DITELIASGREKLASVPSGG AV ++APAGGA+GGGAAP AA+ KKEEKVE
Subjt:  MKVVAAYLLAVLGGNTSPGLDDVNNILNSVGAEVDADRIDSLLSQLKGRDITELIASGREKLASVPSGGSAVAVSAPAGGASGGGAAP-AADPKKEEKVE

Query:  EKEESDDDMGFSLFD
        EKEESDDDMGFSLFD
Subjt:  EKEESDDDMGFSLFD

KAG6605995.1 60S acidic ribosomal protein P2B, partial [Cucurbita argyrosperma subsp. sororia]3.9e-4389.47Show/hide
Query:  MKVVAAYLLAVLGGNTSPGLDDVNNILNSVGAEVDADRIDSLLSQLKGRDITELIASGREKLASVPSGGSAVAVSAPAGGASGGGAAPAADPKKEEKVEE
        MKVVAAYLLAVLGGNTSPGLDDV +ILNSVGAEVD DRI+SLL+Q+KG+DITELIASGREKLASVPSGG AVAV+APAGGA+GGGAAPAA  KKEEKVEE
Subjt:  MKVVAAYLLAVLGGNTSPGLDDVNNILNSVGAEVDADRIDSLLSQLKGRDITELIASGREKLASVPSGGSAVAVSAPAGGASGGGAAPAADPKKEEKVEE

Query:  KEESDDDMGFSLFD
        KEESDDDMGFSLFD
Subjt:  KEESDDDMGFSLFD

KAG7010354.1 60S acidic ribosomal protein P2B [Cucurbita argyrosperma subsp. argyrosperma]5.7e-4288.7Show/hide
Query:  MKVVAAYLLAVLGGNTSPGLDDVNNILNSVGAEVDADRIDSLLSQLKGRDITELIASGREKLASVPSGGSAVAVSAPAGGASGGGAAP-AADPKKEEKVE
        MKVVAAYLLAVLGGNTSPGLDDV  ILNSVGAEVD DRIDSLLSQ+KG+DITELIASGREKLASVPSGG AV ++APAGGA+GGGAAP AA+ KKEEKVE
Subjt:  MKVVAAYLLAVLGGNTSPGLDDVNNILNSVGAEVDADRIDSLLSQLKGRDITELIASGREKLASVPSGGSAVAVSAPAGGASGGGAAP-AADPKKEEKVE

Query:  EKEESDDDMGFSLFD
        EKEESDDDMGFSLFD
Subjt:  EKEESDDDMGFSLFD

XP_022957717.1 60S acidic ribosomal protein P2B-like [Cucurbita moschata]3.9e-4389.47Show/hide
Query:  MKVVAAYLLAVLGGNTSPGLDDVNNILNSVGAEVDADRIDSLLSQLKGRDITELIASGREKLASVPSGGSAVAVSAPAGGASGGGAAPAADPKKEEKVEE
        MKVVAAYLLAVLGGNTSPGLDDV +ILNSVGAEVD DRI+SLL+Q+KG+DITELIASGREKLASVPSGG AVAV+APAGGA+GGGAAPAA  KKEEKVEE
Subjt:  MKVVAAYLLAVLGGNTSPGLDDVNNILNSVGAEVDADRIDSLLSQLKGRDITELIASGREKLASVPSGGSAVAVSAPAGGASGGGAAPAADPKKEEKVEE

Query:  KEESDDDMGFSLFD
        KEESDDDMGFSLFD
Subjt:  KEESDDDMGFSLFD

XP_022986046.1 60S acidic ribosomal protein P2B-like [Cucurbita maxima]5.7e-4288.7Show/hide
Query:  MKVVAAYLLAVLGGNTSPGLDDVNNILNSVGAEVDADRIDSLLSQLKGRDITELIASGREKLASVPSGGSAVAVSAPAGGASGGGAAPAA-DPKKEEKVE
        MKVVAAYLLAVLGGNTSPGLDDV  ILNSVGAEVD DRIDSLLSQ+KG+DITELIASGREKLASVPSGG AV ++APAGGA+GGGAAPAA + KKEEKVE
Subjt:  MKVVAAYLLAVLGGNTSPGLDDVNNILNSVGAEVDADRIDSLLSQLKGRDITELIASGREKLASVPSGGSAVAVSAPAGGASGGGAAPAA-DPKKEEKVE

Query:  EKEESDDDMGFSLFD
        EKEESDDDMGFSLFD
Subjt:  EKEESDDDMGFSLFD

TrEMBL top hitse value%identityAlignment
A0A6J1DJB9 60S acidic ribosomal protein P2B-like1.0e-4186.96Show/hide
Query:  MKVVAAYLLAVLGGNTSPGLDDVNNILNSVGAEVDADRIDSLLSQLKGRDITELIASGREKLASVPSGGSAVAVSAPAGGASGGGAAP-AADPKKEEKVE
        MKVVAAYLLAVLGGNTSPG DDV NILNSVG EVD DRI+SLLSQ+KG+DITELIASGREKLASVPSGG AVAV+APAGGA+GGGAAP AA+ KKEEKVE
Subjt:  MKVVAAYLLAVLGGNTSPGLDDVNNILNSVGAEVDADRIDSLLSQLKGRDITELIASGREKLASVPSGGSAVAVSAPAGGASGGGAAP-AADPKKEEKVE

Query:  EKEESDDDMGFSLFD
        EKE+SDDD+GFSLFD
Subjt:  EKEESDDDMGFSLFD

A0A6J1FYH3 60S acidic ribosomal protein P2B-like8.0e-4287.83Show/hide
Query:  MKVVAAYLLAVLGGNTSPGLDDVNNILNSVGAEVDADRIDSLLSQLKGRDITELIASGREKLASVPSGGSAVAVSAPAGGASGGGAAP-AADPKKEEKVE
        MKVVAAYLLAVLGGNTSPGLDDV  ILNSVGAEVD DRIDSLLSQ+KG+DITELIASGREKLASVPSGG AV ++APAGG +GGGAAP AA+ KKEEKVE
Subjt:  MKVVAAYLLAVLGGNTSPGLDDVNNILNSVGAEVDADRIDSLLSQLKGRDITELIASGREKLASVPSGGSAVAVSAPAGGASGGGAAP-AADPKKEEKVE

Query:  EKEESDDDMGFSLFD
        EKEESDDDMGFSLFD
Subjt:  EKEESDDDMGFSLFD

A0A6J1GZW9 60S acidic ribosomal protein P2B-like1.9e-4389.47Show/hide
Query:  MKVVAAYLLAVLGGNTSPGLDDVNNILNSVGAEVDADRIDSLLSQLKGRDITELIASGREKLASVPSGGSAVAVSAPAGGASGGGAAPAADPKKEEKVEE
        MKVVAAYLLAVLGGNTSPGLDDV +ILNSVGAEVD DRI+SLL+Q+KG+DITELIASGREKLASVPSGG AVAV+APAGGA+GGGAAPAA  KKEEKVEE
Subjt:  MKVVAAYLLAVLGGNTSPGLDDVNNILNSVGAEVDADRIDSLLSQLKGRDITELIASGREKLASVPSGGSAVAVSAPAGGASGGGAAPAADPKKEEKVEE

Query:  KEESDDDMGFSLFD
        KEESDDDMGFSLFD
Subjt:  KEESDDDMGFSLFD

A0A6J1J9Z4 60S acidic ribosomal protein P2B-like2.7e-4288.7Show/hide
Query:  MKVVAAYLLAVLGGNTSPGLDDVNNILNSVGAEVDADRIDSLLSQLKGRDITELIASGREKLASVPSGGSAVAVSAPAGGASGGGAAPAA-DPKKEEKVE
        MKVVAAYLLAVLGGNTSPGLDDV  ILNSVGAEVD DRIDSLLSQ+KG+DITELIASGREKLASVPSGG AV ++APAGGA+GGGAAPAA + KKEEKVE
Subjt:  MKVVAAYLLAVLGGNTSPGLDDVNNILNSVGAEVDADRIDSLLSQLKGRDITELIASGREKLASVPSGGSAVAVSAPAGGASGGGAAPAA-DPKKEEKVE

Query:  EKEESDDDMGFSLFD
        EKEESDDDMGFSLFD
Subjt:  EKEESDDDMGFSLFD

A0A6J1KA82 60S acidic ribosomal protein P2B-like5.2e-4186.84Show/hide
Query:  MKVVAAYLLAVLGGNTSPGLDDVNNILNSVGAEVDADRIDSLLSQLKGRDITELIASGREKLASVPSGGSAVAVSAPAGGASGGGAAPAADPKKEEKVEE
        MKVVAAYLLAVLGGNTSPGLDDV  ILNSVGAEVD +RI+SLL+Q+KG+DITELI SGREKLASVPSGG AVAV+A AGGA+GGGAAPAA  KKEEKVEE
Subjt:  MKVVAAYLLAVLGGNTSPGLDDVNNILNSVGAEVDADRIDSLLSQLKGRDITELIASGREKLASVPSGGSAVAVSAPAGGASGGGAAPAADPKKEEKVEE

Query:  KEESDDDMGFSLFD
        KEESDDDMGFSLFD
Subjt:  KEESDDDMGFSLFD

SwissProt top hitse value%identityAlignment
O24415 60S acidic ribosomal protein P2B2.0e-3470.18Show/hide
Query:  MKVVAAYLLAVLGGNTSPGLDDVNNILNSVGAEVDADRIDSLLSQLKGRDITELIASGREKLASVPSGGSAVAVSAPAGGASGGGAAPAADPKKEEKVEE
        MKV+AAYLLAVLGGNTSP  DDV +IL SVGAE D ++++ LL++LK +DITE+IA+GRE+L+SVPSGG A+ + APA   +GGGAAPA + KKEEKVEE
Subjt:  MKVVAAYLLAVLGGNTSPGLDDVNNILNSVGAEVDADRIDSLLSQLKGRDITELIASGREKLASVPSGGSAVAVSAPAGGASGGGAAPAADPKKEEKVEE

Query:  KEESDDDMGFSLFD
        KEESD+DMGFSLFD
Subjt:  KEESDDDMGFSLFD

P41099 60S acidic ribosomal protein P21.5e-2969.23Show/hide
Query:  MKVVAAYLLAVLGGNTSPGLDDVNNILNSVGAEVDADRIDSLLSQLKGRDITELIASGREKLASVPSGGSAVAVSAPAGGASGGGAAPAA---DPKKEEK
        MKV+AA+LLA+LGGNTSP  +D+ +IL SVGA+ D D+I+ LLSQ+KG+DITELIASGRE+LASVPSGG  VAV+A AGG  GGG APAA   +PKKEEK
Subjt:  MKVVAAYLLAVLGGNTSPGLDDVNNILNSVGAEVDADRIDSLLSQLKGRDITELIASGREKLASVPSGGSAVAVSAPAGGASGGGAAPAA---DPKKEEK

Query:  VEEKEESDDDMGFSLFD
         E  EESD+++GFSLFD
Subjt:  VEEKEESDDDMGFSLFD

P46252 60S acidic ribosomal protein P2A3.8e-3372.81Show/hide
Query:  MKVVAAYLLAVLGGNTSPGLDDVNNILNSVGAEVDADRIDSLLSQLKGRDITELIASGREKLASVPSGGSAVAVSAPAGGASGGGAAPAADPKKEEKVEE
        MK VAAYLLAVL GN SP  DD+  IL SVG EVD ++++ LLSQL G+DITELIA+GREK ASVP GG  VAV+A A  A  GGAAPAA+ KKEEKVEE
Subjt:  MKVVAAYLLAVLGGNTSPGLDDVNNILNSVGAEVDADRIDSLLSQLKGRDITELIASGREKLASVPSGGSAVAVSAPAGGASGGGAAPAADPKKEEKVEE

Query:  KEESDDDMGFSLFD
        KEESDDDMGFSLFD
Subjt:  KEESDDDMGFSLFD

P51407 60S acidic ribosomal protein P2-16.7e-3065.22Show/hide
Query:  MKVVAAYLLAVLGGNTSPGLDDVNNILNSVGAEVDADRIDSLLSQLKGRDITELIASGREKLASVPS-GGSAVAVSAPAGGASGGGAAPAADPKKEEKVE
        MKVVAA+LLAVL G  SP   D+ +IL SVGAE +  +I+ LL ++KG+D+ ELIA+GREKLASVPS GG  VAV++   G  GGG APAA+ KKEEK E
Subjt:  MKVVAAYLLAVLGGNTSPGLDDVNNILNSVGAEVDADRIDSLLSQLKGRDITELIASGREKLASVPS-GGSAVAVSAPAGGASGGGAAPAADPKKEEKVE

Query:  EKEESDDDMGFSLFD
        EKEESDDDMGFSLF+
Subjt:  EKEESDDDMGFSLFD

Q9SLF7 60S acidic ribosomal protein P2-24.4e-2965.22Show/hide
Query:  MKVVAAYLLAVLGGNTSPGLDDVNNILNSVGAEVDADRIDSLLSQLKGRDITELIASGREKLASVPS-GGSAVAVSAPAGGASGGGAAPAADPKKEEKVE
        MKVVAAYLLAVL G  SP   D+  IL SVGAE +  +I+ LL ++KG+D+ ELIA+GREKLASVPS GG  VAV++   G  GGG A AA+ KKEEK E
Subjt:  MKVVAAYLLAVLGGNTSPGLDDVNNILNSVGAEVDADRIDSLLSQLKGRDITELIASGREKLASVPS-GGSAVAVSAPAGGASGGGAAPAADPKKEEKVE

Query:  EKEESDDDMGFSLFD
        EKEESDDDMGFSLF+
Subjt:  EKEESDDDMGFSLFD

Arabidopsis top hitse value%identityAlignment
AT2G27710.1 60S acidic ribosomal protein family3.1e-3065.22Show/hide
Query:  MKVVAAYLLAVLGGNTSPGLDDVNNILNSVGAEVDADRIDSLLSQLKGRDITELIASGREKLASVPS-GGSAVAVSAPAGGASGGGAAPAADPKKEEKVE
        MKVVAAYLLAVL G  SP   D+  IL SVGAE +  +I+ LL ++KG+D+ ELIA+GREKLASVPS GG  VAV++   G  GGG A AA+ KKEEK E
Subjt:  MKVVAAYLLAVLGGNTSPGLDDVNNILNSVGAEVDADRIDSLLSQLKGRDITELIASGREKLASVPS-GGSAVAVSAPAGGASGGGAAPAADPKKEEKVE

Query:  EKEESDDDMGFSLFD
        EKEESDDDMGFSLF+
Subjt:  EKEESDDDMGFSLFD

AT2G27710.2 60S acidic ribosomal protein family3.1e-3065.22Show/hide
Query:  MKVVAAYLLAVLGGNTSPGLDDVNNILNSVGAEVDADRIDSLLSQLKGRDITELIASGREKLASVPS-GGSAVAVSAPAGGASGGGAAPAADPKKEEKVE
        MKVVAAYLLAVL G  SP   D+  IL SVGAE +  +I+ LL ++KG+D+ ELIA+GREKLASVPS GG  VAV++   G  GGG A AA+ KKEEK E
Subjt:  MKVVAAYLLAVLGGNTSPGLDDVNNILNSVGAEVDADRIDSLLSQLKGRDITELIASGREKLASVPS-GGSAVAVSAPAGGASGGGAAPAADPKKEEKVE

Query:  EKEESDDDMGFSLFD
        EKEESDDDMGFSLF+
Subjt:  EKEESDDDMGFSLFD

AT2G27710.3 60S acidic ribosomal protein family3.1e-3065.22Show/hide
Query:  MKVVAAYLLAVLGGNTSPGLDDVNNILNSVGAEVDADRIDSLLSQLKGRDITELIASGREKLASVPS-GGSAVAVSAPAGGASGGGAAPAADPKKEEKVE
        MKVVAAYLLAVL G  SP   D+  IL SVGAE +  +I+ LL ++KG+D+ ELIA+GREKLASVPS GG  VAV++   G  GGG A AA+ KKEEK E
Subjt:  MKVVAAYLLAVLGGNTSPGLDDVNNILNSVGAEVDADRIDSLLSQLKGRDITELIASGREKLASVPS-GGSAVAVSAPAGGASGGGAAPAADPKKEEKVE

Query:  EKEESDDDMGFSLFD
        EKEESDDDMGFSLF+
Subjt:  EKEESDDDMGFSLFD

AT2G27720.1 60S acidic ribosomal protein family4.8e-3165.22Show/hide
Query:  MKVVAAYLLAVLGGNTSPGLDDVNNILNSVGAEVDADRIDSLLSQLKGRDITELIASGREKLASVPS-GGSAVAVSAPAGGASGGGAAPAADPKKEEKVE
        MKVVAA+LLAVL G  SP   D+ +IL SVGAE +  +I+ LL ++KG+D+ ELIA+GREKLASVPS GG  VAV++   G  GGG APAA+ KKEEK E
Subjt:  MKVVAAYLLAVLGGNTSPGLDDVNNILNSVGAEVDADRIDSLLSQLKGRDITELIASGREKLASVPS-GGSAVAVSAPAGGASGGGAAPAADPKKEEKVE

Query:  EKEESDDDMGFSLFD
        EKEESDDDMGFSLF+
Subjt:  EKEESDDDMGFSLFD

AT3G44590.2 60S acidic ribosomal protein family2.0e-2964.91Show/hide
Query:  MKVVAAYLLAVLGGNTSPGLDDVNNILNSVGAEVDADRIDSLLSQLKGRDITELIASGREKLASVPSGGSAVAVSAPAGGASGGGAAPAADPKKEEKVEE
        MKV AA+LLAVLGGN +P  D++ +I+ +VGA+VD + I+ LL ++ G+DI ELIASGREKLASVPSGG  VAVSA      GG AAPA   KKE K EE
Subjt:  MKVVAAYLLAVLGGNTSPGLDDVNNILNSVGAEVDADRIDSLLSQLKGRDITELIASGREKLASVPSGGSAVAVSAPAGGASGGGAAPAADPKKEEKVEE

Query:  KEESDDDMGFSLFD
        KEESDDDMGFSLF+
Subjt:  KEESDDDMGFSLFD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGGTGGTCGCTGCGTATTTGCTGGCCGTACTCGGTGGCAACACCAGCCCCGGACTCGATGATGTGAACAATATTCTTAATTCAGTCGGGGCTGAGGTCGATGCGGA
CCGGATAGACTCGCTGTTATCCCAACTGAAAGGAAGGGACATCACAGAGTTGATAGCCTCCGGGCGGGAGAAGTTGGCGTCAGTGCCCTCCGGTGGTTCTGCAGTCGCTG
TCTCCGCCCCTGCCGGTGGCGCTTCCGGTGGCGGCGCAGCACCCGCAGCCGACCCGAAGAAAGAGGAGAAGGTCGAGGAGAAAGAAGAATCCGACGATGATATGGGTTTC
AGCCTCTTTGACTGA
mRNA sequenceShow/hide mRNA sequence
ATGAAGGTGGTCGCTGCGTATTTGCTGGCCGTACTCGGTGGCAACACCAGCCCCGGACTCGATGATGTGAACAATATTCTTAATTCAGTCGGGGCTGAGGTCGATGCGGA
CCGGATAGACTCGCTGTTATCCCAACTGAAAGGAAGGGACATCACAGAGTTGATAGCCTCCGGGCGGGAGAAGTTGGCGTCAGTGCCCTCCGGTGGTTCTGCAGTCGCTG
TCTCCGCCCCTGCCGGTGGCGCTTCCGGTGGCGGCGCAGCACCCGCAGCCGACCCGAAGAAAGAGGAGAAGGTCGAGGAGAAAGAAGAATCCGACGATGATATGGGTTTC
AGCCTCTTTGACTGA
Protein sequenceShow/hide protein sequence
MKVVAAYLLAVLGGNTSPGLDDVNNILNSVGAEVDADRIDSLLSQLKGRDITELIASGREKLASVPSGGSAVAVSAPAGGASGGGAAPAADPKKEEKVEEKEESDDDMGF
SLFD