; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Sed0002070 (gene) of Chayote v1 genome

Gene IDSed0002070
OrganismSechium edule (Chayote v1)
Description60S ribosomal protein L38, putative
Genome locationLG07:540059..541285
RNA-Seq ExpressionSed0002070
SyntenySed0002070
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0022618 - ribonucleoprotein complex assembly (biological process)
GO:0022625 - cytosolic large ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR002675 - Ribosomal protein L38e
IPR038464 - Ribosomal protein L38e superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
EEF28545.1 60S ribosomal protein L38, putative [Ricinus communis]6.7e-2995.77Show/hide
Query:  YFQPKQIHEIKDFLLTARRKDARSVKIMRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLTVQDL
        YF PKQIHEIKDFLLTARRKDARSVKI RSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGL+VQDL
Subjt:  YFQPKQIHEIKDFLLTARRKDARSVKIMRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLTVQDL

KAA0039935.1 putative 60S ribosomal protein L38 [Cucumis melo var. makuwa]2.6e-2897.1Show/hide
Query:  QPKQIHEIKDFLLTARRKDARSVKIMRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLTVQDL
        QPKQIHEIKDFLLTARRKDARSVKI RSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGL+VQDL
Subjt:  QPKQIHEIKDFLLTARRKDARSVKIMRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLTVQDL

KAG5530677.1 hypothetical protein RHGRI_025592 [Rhododendron griersonianum]2.6e-2897.1Show/hide
Query:  QPKQIHEIKDFLLTARRKDARSVKIMRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLTVQDL
        QPKQIHEIKDFLLTARRKDARSVKI RSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGL+VQDL
Subjt:  QPKQIHEIKDFLLTARRKDARSVKIMRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLTVQDL

KAG6767624.1 hypothetical protein POTOM_028836 [Populus tomentosa]1.5e-2884.15Show/hide
Query:  MLQSILRLFALYFQPKQIHEIKDFLLTARRKDARSVKIMRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLTVQDL
        +L   L LF  Y QPKQIHEIKDFLLTARRKDARSVKI RS+D VKFKVRCSKYLYTLCVFD+EKADKLKQSLPPGL+VQDL
Subjt:  MLQSILRLFALYFQPKQIHEIKDFLLTARRKDARSVKIMRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLTVQDL

TXG48864.1 hypothetical protein EZV62_024739 [Acer yangbiense]1.5e-2895.71Show/hide
Query:  FQPKQIHEIKDFLLTARRKDARSVKIMRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLTVQDL
        FQPKQIHEIKDFLLTARRKDARSVKI RSKDVVKFKVRCSKYLYTLCVFD+EKADKLKQSLPPGL+VQDL
Subjt:  FQPKQIHEIKDFLLTARRKDARSVKIMRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLTVQDL

TrEMBL top hitse value%identityAlignment
A0A5A7TEP5 Putative 60S ribosomal protein L381.2e-2897.1Show/hide
Query:  QPKQIHEIKDFLLTARRKDARSVKIMRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLTVQDL
        QPKQIHEIKDFLLTARRKDARSVKI RSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGL+VQDL
Subjt:  QPKQIHEIKDFLLTARRKDARSVKIMRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLTVQDL

A0A5C7GVP2 Uncharacterized protein7.3e-2995.71Show/hide
Query:  FQPKQIHEIKDFLLTARRKDARSVKIMRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLTVQDL
        FQPKQIHEIKDFLLTARRKDARSVKI RSKDVVKFKVRCSKYLYTLCVFD+EKADKLKQSLPPGL+VQDL
Subjt:  FQPKQIHEIKDFLLTARRKDARSVKIMRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLTVQDL

A0A6J1IBC7 60S ribosomal protein L38 isoform X11.2e-2897.1Show/hide
Query:  QPKQIHEIKDFLLTARRKDARSVKIMRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLTVQDL
        QPKQIHEIKDFLLTARRKDARSVKI RSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGL+VQDL
Subjt:  QPKQIHEIKDFLLTARRKDARSVKIMRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLTVQDL

B9RM38 60S ribosomal protein L38, putative1.2e-2897.1Show/hide
Query:  QPKQIHEIKDFLLTARRKDARSVKIMRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLTVQDL
        QPKQIHEIKDFLLTARRKDARSVKI RSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGL+VQDL
Subjt:  QPKQIHEIKDFLLTARRKDARSVKIMRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLTVQDL

B9T6H4 60S ribosomal protein L38, putative3.3e-2995.77Show/hide
Query:  YFQPKQIHEIKDFLLTARRKDARSVKIMRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLTVQDL
        YF PKQIHEIKDFLLTARRKDARSVKI RSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGL+VQDL
Subjt:  YFQPKQIHEIKDFLLTARRKDARSVKIMRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLTVQDL

SwissProt top hitse value%identityAlignment
O22860 60S ribosomal protein L381.1e-2992.65Show/hide
Query:  PKQIHEIKDFLLTARRKDARSVKIMRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLTVQDL
        PKQIHEIKDFLLTARRKDARSVKI RSKD+VKFKVRCS+YLYTLCVFD EKADKLKQSLPPGL+VQDL
Subjt:  PKQIHEIKDFLLTARRKDARSVKIMRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLTVQDL

P46291 60S ribosomal protein L381.3e-2788.24Show/hide
Query:  PKQIHEIKDFLLTARRKDARSVKIMRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLTVQDL
        PKQIHEIKDFLLTARRKDAR+VKI ++KD+VKFKVRCSKYLYTLCV D EKADKLKQSLPPGL+VQDL
Subjt:  PKQIHEIKDFLLTARRKDARSVKIMRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLTVQDL

Q32PB9 60S ribosomal protein L381.7e-2275Show/hide
Query:  PKQIHEIKDFLLTARRKDARSVKIMRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLTVQDL
        P++I EIKDFLLTARRKDA+SVKI ++KD VKFKVRCS+YLYTL + D EKA+KLKQSLPPGL V++L
Subjt:  PKQIHEIKDFLLTARRKDARSVKIMRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLTVQDL

Q95V84 60S ribosomal protein L381.0e-2480.88Show/hide
Query:  PKQIHEIKDFLLTARRKDARSVKIMRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLTVQDL
        PKQIHEIKDFLLTARRKDA+SVKI ++KD VKFKVRCS+YLYTL + D EKADKLKQSLPPGL V++L
Subjt:  PKQIHEIKDFLLTARRKDARSVKIMRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLTVQDL

Q9JJI8 60S ribosomal protein L385.7e-2376.47Show/hide
Query:  PKQIHEIKDFLLTARRKDARSVKIMRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLTVQDL
        P++I EIKDFLLTARRKDA+SVKI ++KD VKFKVRCS+YLYTL + D EKA+KLKQSLPPGL V+DL
Subjt:  PKQIHEIKDFLLTARRKDARSVKIMRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLTVQDL

Arabidopsis top hitse value%identityAlignment
AT2G43460.1 Ribosomal L38e protein family7.7e-3192.65Show/hide
Query:  PKQIHEIKDFLLTARRKDARSVKIMRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLTVQDL
        PKQIHEIKDFLLTARRKDARSVKI RSKD+VKFKVRCS+YLYTLCVFD EKADKLKQSLPPGL+VQDL
Subjt:  PKQIHEIKDFLLTARRKDARSVKIMRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLTVQDL

AT3G59540.1 Ribosomal L38e protein family7.7e-3192.65Show/hide
Query:  PKQIHEIKDFLLTARRKDARSVKIMRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLTVQDL
        PKQIHEIKDFLLTARRKDARSVKI RSKD+VKFKVRCS+YLYTLCVFD EKADKLKQSLPPGL+VQDL
Subjt:  PKQIHEIKDFLLTARRKDARSVKIMRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLTVQDL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTACAATCAATTCTAAGACTTTTTGCTCTATATTTTCAGCCGAAGCAAATTCACGAGATCAAAGATTTCCTTCTCACTGCAAGAAGGAAGGATGCTCGATCTGTGAA
AATTATGAGGAGCAAGGATGTGGTGAAGTTCAAAGTTCGATGCTCTAAGTATCTTTATACTCTTTGTGTTTTCGACTCTGAGAAAGCTGACAAGTTGAAGCAATCTCTTC
CGCCAGGATTGACTGTGCAAGATCTGTAA
mRNA sequenceShow/hide mRNA sequence
ATTGCAAAACAATATATTCTGACGAGACTTAAATTTGATGTATTCTTGAAGTTTTTCTGTTGTTGAGATCTAGGAGTACTCACGTGTTTTTTAATTTTTTTAGTTGTGGG
ATTGTTCTGTGATCTCGCACATTTTATTTTTTAATTATGGGTTTGTTATGTTACAATCAATTCTAAGACTTTTTGCTCTATATTTTCAGCCGAAGCAAATTCACGAGATC
AAAGATTTCCTTCTCACTGCAAGAAGGAAGGATGCTCGATCTGTGAAAATTATGAGGAGCAAGGATGTGGTGAAGTTCAAAGTTCGATGCTCTAAGTATCTTTATACTCT
TTGTGTTTTCGACTCTGAGAAAGCTGACAAGTTGAAGCAATCTCTTCCGCCAGGATTGACTGTGCAAGATCTGTAAACGAATGGATTGCAGTTGCCTGGACGATTACAGG
AAGAATACTCATTTTTTCTTGTTTTTGATTTTGTGGTTTTTCCAGCTGATTAGAATATGTTGAAGTTAGATTTTGATCGTGTAGTAATCCATATTCTCTTCATTTTCCAG
TGAATTTGTTGTCATTGAGAATTGTTGTGCTGAATTTATTATGTGGGGTACCAGTTGATGGTTCAGTCATTCTATTCAAAGGTAGATTTGAAAAGCTCTGCCTAGTTTGT
GGGTTATGAAATTTACAACACACTAGATAGGGAAACAAATCTAGTATAATGGTTGGATTTAAATAAGTAAGGCTTCATTTTTTTGAATTTACTTCAATTCTCTGATATGT
TTTATCCAAAC
Protein sequenceShow/hide protein sequence
MLQSILRLFALYFQPKQIHEIKDFLLTARRKDARSVKIMRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLTVQDL