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Sed0002130 (gene) of Chayote v1 genome

Gene IDSed0002130
OrganismSechium edule (Chayote v1)
DescriptionBEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein .
Genome locationLG05:40029897..40030697
RNA-Seq ExpressionSed0002130
SyntenySed0002130
Gene Ontology termsGO:0016020 - membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7010594.1 hypothetical protein SDJN02_27388, partial [Cucurbita argyrosperma subsp. argyrosperma]6.6e-3562.18Show/hide
Query:  MQQRS--LSSFR-ETDDHCSIIFSAAQQDPQGRRT----SMDDF--DILPVSDHCFATRKRAQISRCRLAGKWIHSIPFMLLLIFFVLWWFSYPVNLVIK
        MQQRS   SSFR  TDDHCSI FS A Q+PQGR +    SMDD    ILPVSD   + RKR   SR + + +WIH IP +LLL+ F+LWW SYPVNLVIK
Subjt:  MQQRS--LSSFR-ETDDHCSIIFSAAQQDPQGRRT----SMDDF--DILPVSDHCFATRKRAQISRCRLAGKWIHSIPFMLLLIFFVLWWFSYPVNLVIK

Query:  DREIIAVYAHEFLEMPKYIDHVELASLGESRMKIASSPLNPTSVGSPDVRIPSKVD
        D  I AVYA EF E PKYIDHVELA LG + M+IASSPLN TSVG+ D+R P K++
Subjt:  DREIIAVYAHEFLEMPKYIDHVELASLGESRMKIASSPLNPTSVGSPDVRIPSKVD

XP_022986953.1 uncharacterized protein LOC111484535 isoform X1 [Cucurbita maxima]1.1e-3463.16Show/hide
Query:  MQQRS--LSSFR-ETDDHCSIIFSAAQQDPQGRRT----SMDDF--DILPVSDHCFATRKRAQISRCRLAGKWIHSIPFMLLLIFFVLWWFSYPVNLVIK
        MQQRS   SSFR  TDDHCSIIFS A Q+PQGR +    SMDD     LPVSD   + RKR   SR + + +WIH IP +LLL+ F+LWW SYPVNLVIK
Subjt:  MQQRS--LSSFR-ETDDHCSIIFSAAQQDPQGRRT----SMDDF--DILPVSDHCFATRKRAQISRCRLAGKWIHSIPFMLLLIFFVLWWFSYPVNLVIK

Query:  DREIIAVYAHEFLEMPKYIDHVELASLGESRMKIASSPLNPTSVGSPDVRIP
        D  I AVYA EF E PKYIDHVELA LG++ M+IASSPLN TSVG+ D+R P
Subjt:  DREIIAVYAHEFLEMPKYIDHVELASLGESRMKIASSPLNPTSVGSPDVRIP

XP_022986954.1 uncharacterized protein LOC111484535 isoform X2 [Cucurbita maxima]2.3e-3562.99Show/hide
Query:  MQQRS--LSSFR-ETDDHCSIIFSAAQQDPQGRRT----SMDDF--DILPVSDHCFATRKRAQISRCRLAGKWIHSIPFMLLLIFFVLWWFSYPVNLVIK
        MQQRS   SSFR  TDDHCSIIFS A Q+PQGR +    SMDD     LPVSD   + RKR   SR + + +WIH IP +LLL+ F+LWW SYPVNLVIK
Subjt:  MQQRS--LSSFR-ETDDHCSIIFSAAQQDPQGRRT----SMDDF--DILPVSDHCFATRKRAQISRCRLAGKWIHSIPFMLLLIFFVLWWFSYPVNLVIK

Query:  DREIIAVYAHEFLEMPKYIDHVELASLGESRMKIASSPLNPTSVGSPDVRIPSK
        D  I AVYA EF E PKYIDHVELA LG++ M+IASSPLN TSVG+ D+R P+K
Subjt:  DREIIAVYAHEFLEMPKYIDHVELASLGESRMKIASSPLNPTSVGSPDVRIPSK

XP_023512016.1 uncharacterized protein LOC111776853 isoform X2 [Cucurbita pepo subsp. pepo]5.1e-3562.99Show/hide
Query:  MQQRS--LSSFR-ETDDHCSIIFSAAQQDPQGR----RTSMDDF--DILPVSDHCFATRKRAQISRCRLAGKWIHSIPFMLLLIFFVLWWFSYPVNLVIK
        MQQRS   SSFR  TDDHCSIIFS A Q+PQGR      SMDD    ILPVSD   + RKR   SR + + +WIH IP +LLL+ F+LWW SYPVNLVI 
Subjt:  MQQRS--LSSFR-ETDDHCSIIFSAAQQDPQGR----RTSMDDF--DILPVSDHCFATRKRAQISRCRLAGKWIHSIPFMLLLIFFVLWWFSYPVNLVIK

Query:  DREIIAVYAHEFLEMPKYIDHVELASLGESRMKIASSPLNPTSVGSPDVRIPSK
        D  I AVYA EF E PKYIDHVELA LG++ M IASSPLN TSVG+ D+R P+K
Subjt:  DREIIAVYAHEFLEMPKYIDHVELASLGESRMKIASSPLNPTSVGSPDVRIPSK

XP_038902298.1 uncharacterized protein LOC120088933 [Benincasa hispida]2.2e-3860Show/hide
Query:  MQQRSLSSFRETD--DHCSI-IFSAAQQDPQGRRTS-------MDDFD--ILPVSDHCFATRKRAQISRCRLAGKWIHSIPFMLLLIFFVLWWFSYPVNL
        MQQR+LSSFR T+  DHC+I IFS   Q+P+GRR+        MDD +  +LP+SD  F+T+KR   SR R A +WIH IP +LLLI F+LWW SYPVN+
Subjt:  MQQRSLSSFRETD--DHCSI-IFSAAQQDPQGRRTS-------MDDFD--ILPVSDHCFATRKRAQISRCRLAGKWIHSIPFMLLLIFFVLWWFSYPVNL

Query:  VIKDREIIAVYAH-EFLEMPKYIDHVELASLGESRMKIASSPLNPTSVGSPDVRIPSKVD
        VIKD  I AVY + +F E PKYIDHVELA LG++ M+IASSPLN TS+G  D+RIPSKVD
Subjt:  VIKDREIIAVYAH-EFLEMPKYIDHVELASLGESRMKIASSPLNPTSVGSPDVRIPSKVD

TrEMBL top hitse value%identityAlignment
A0A5D3CTN8 Uncharacterized protein3.1e-3056.77Show/hide
Query:  MQQRSLSSFR-ETDDHCSIIFSAAQQDPQGRRTSM-DDF----DILPVSDHCFATRKRAQISRCRLAGKWIHSIPFMLLLIFFVLWWFSYPVNLVIKDRE
        MQQR   +FR  TD+HCS++ S   ++PQG R+SM DDF    D+LP+SD  F+ RKR + SR R    WIH IP +LLLI F+LWW SYP   VIKD  
Subjt:  MQQRSLSSFR-ETDDHCSIIFSAAQQDPQGRRTSM-DDF----DILPVSDHCFATRKRAQISRCRLAGKWIHSIPFMLLLIFFVLWWFSYPVNLVIKDRE

Query:  IIAVYAHEFL-EMPKYIDHVELASLGESRMKIASSPLNPTSVGSPDVR-IPSKVD
        I A Y  E L E+PKY+DH ELA LG++ M IASSPLN TSVG  D R IPSK+D
Subjt:  IIAVYAHEFL-EMPKYIDHVELASLGESRMKIASSPLNPTSVGSPDVR-IPSKVD

A0A6J1CX54 uncharacterized protein LOC1110153858.7e-3357.05Show/hide
Query:  MQQRSLSSFRETDDHCSIIFSAAQQDPQGRRT-------SMDDFDILPVSDHCFATRKRAQISRCRLAGKWIHSIPFMLLLIFFVLWWFSYPVNLVIKDR
        MQQRSLS FR TDDHC II     Q+PQGRR+        +D   +LPVSD     R R  +S  RLA +WIH IP  L L+ F+LWWFSYPVNL IKD 
Subjt:  MQQRSLSSFRETDDHCSIIFSAAQQDPQGRRT-------SMDDFDILPVSDHCFATRKRAQISRCRLAGKWIHSIPFMLLLIFFVLWWFSYPVNLVIKDR

Query:  EIIAVYAHEFLEMPK-YIDHVELASLGESRMKIASSPLNPTSVGSPDVR
        EI  VY +EF E PK YIDHVELA LG + M+IASSPLN T  G+ D++
Subjt:  EIIAVYAHEFLEMPK-YIDHVELASLGESRMKIASSPLNPTSVGSPDVR

A0A6J1FUE4 uncharacterized protein LOC1114488844.6e-3461.94Show/hide
Query:  MQQRS--LSSFR-ETDDHCSIIFSAAQQDPQGRRT----SMDDF--DILPVSDHCFATRKRAQISRCRLAGKWIHSIPFMLLLIFFVLWWFSYPVNLVIK
        MQQRS   SSFR  TDDHCSIIFS A Q+PQGR +    SMDD    ILPVSD   + RKR   SR + + +WIH IP +LLL+ F+LWW SYPVNLVIK
Subjt:  MQQRS--LSSFR-ETDDHCSIIFSAAQQDPQGRRT----SMDDF--DILPVSDHCFATRKRAQISRCRLAGKWIHSIPFMLLLIFFVLWWFSYPVNLVIK

Query:  DREIIAVYAHEFLEMPKYIDHVELASLGESRMKIASSPLNPTSVGSPDVRIPSKV
        D  I AVYA EF E PKYIDHVELA L  + M+IASSPLN TSVG+ D+  P K+
Subjt:  DREIIAVYAHEFLEMPKYIDHVELASLGESRMKIASSPLNPTSVGSPDVRIPSKV

A0A6J1JHI4 uncharacterized protein LOC111484535 isoform X21.1e-3562.99Show/hide
Query:  MQQRS--LSSFR-ETDDHCSIIFSAAQQDPQGRRT----SMDDF--DILPVSDHCFATRKRAQISRCRLAGKWIHSIPFMLLLIFFVLWWFSYPVNLVIK
        MQQRS   SSFR  TDDHCSIIFS A Q+PQGR +    SMDD     LPVSD   + RKR   SR + + +WIH IP +LLL+ F+LWW SYPVNLVIK
Subjt:  MQQRS--LSSFR-ETDDHCSIIFSAAQQDPQGRRT----SMDDF--DILPVSDHCFATRKRAQISRCRLAGKWIHSIPFMLLLIFFVLWWFSYPVNLVIK

Query:  DREIIAVYAHEFLEMPKYIDHVELASLGESRMKIASSPLNPTSVGSPDVRIPSK
        D  I AVYA EF E PKYIDHVELA LG++ M+IASSPLN TSVG+ D+R P+K
Subjt:  DREIIAVYAHEFLEMPKYIDHVELASLGESRMKIASSPLNPTSVGSPDVRIPSK

A0A6J1JI18 uncharacterized protein LOC111484535 isoform X15.5e-3563.16Show/hide
Query:  MQQRS--LSSFR-ETDDHCSIIFSAAQQDPQGRRT----SMDDF--DILPVSDHCFATRKRAQISRCRLAGKWIHSIPFMLLLIFFVLWWFSYPVNLVIK
        MQQRS   SSFR  TDDHCSIIFS A Q+PQGR +    SMDD     LPVSD   + RKR   SR + + +WIH IP +LLL+ F+LWW SYPVNLVIK
Subjt:  MQQRS--LSSFR-ETDDHCSIIFSAAQQDPQGRRT----SMDDF--DILPVSDHCFATRKRAQISRCRLAGKWIHSIPFMLLLIFFVLWWFSYPVNLVIK

Query:  DREIIAVYAHEFLEMPKYIDHVELASLGESRMKIASSPLNPTSVGSPDVRIP
        D  I AVYA EF E PKYIDHVELA LG++ M+IASSPLN TSVG+ D+R P
Subjt:  DREIIAVYAHEFLEMPKYIDHVELASLGESRMKIASSPLNPTSVGSPDVRIP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G07860.1 BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT1G07870.2)3.1e-0635.29Show/hide
Query:  GRRTSMDDFDILPVSDHCFATRKRAQISRCRLAGKWIHSIPFMLLLIFFVLWWFSYPVNLVIKDREIIAVYAHEFLEMPKYIDHVELASLGESRMKIASS
        GRRT      I PVS++                  WIH+IP ++ L FF LW FS+ V+ V+ D EI++++  E     +   HV LA L  S +  ASS
Subjt:  GRRTSMDDFDILPVSDHCFATRKRAQISRCRLAGKWIHSIPFMLLLIFFVLWWFSYPVNLVIKDREIIAVYAHEFLEMPKYIDHVELASLGESRMKIASS

Query:  PL
         L
Subjt:  PL

AT1G07870.2 Protein kinase superfamily protein2.6e-0541.79Show/hide
Query:  WIHSIPFMLLLIFFVLWWFSYPVNLVIKDREIIAVYAHEFLEMPKYIDHVELASLGESRMKIASSPL
        WIH+IP ++ L FF LW FS+ V+ V+ D EI++++  E     +   HV LA L  S +  ASS L
Subjt:  WIHSIPFMLLLIFFVLWWFSYPVNLVIKDREIIAVYAHEFLEMPKYIDHVELASLGESRMKIASSPL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAGCAGAGATCGTTGAGTTCGTTCCGAGAAACCGACGATCATTGCAGCATAATCTTCAGCGCAGCGCAACAAGATCCACAAGGAAGAAGAACATCCATGGACGATTT
CGATATTCTTCCAGTTTCCGATCATTGTTTCGCCACAAGAAAGCGAGCTCAGATTTCGCGCTGTAGATTGGCCGGGAAGTGGATCCATTCCATTCCTTTCATGCTGCTTC
TAATCTTCTTCGTTCTCTGGTGGTTCTCTTATCCAGTGAATTTGGTGATCAAGGATCGAGAAATTATAGCAGTTTATGCTCACGAATTTCTGGAAATGCCAAAGTATATT
GATCATGTCGAACTTGCAAGCTTAGGAGAAAGCAGAATGAAGATTGCTTCGAGTCCTCTGAATCCAACAAGCGTTGGCTCTCCAGATGTACGGATTCCAAGTAAGGTCGA
TTGA
mRNA sequenceShow/hide mRNA sequence
ATGCAGCAGAGATCGTTGAGTTCGTTCCGAGAAACCGACGATCATTGCAGCATAATCTTCAGCGCAGCGCAACAAGATCCACAAGGAAGAAGAACATCCATGGACGATTT
CGATATTCTTCCAGTTTCCGATCATTGTTTCGCCACAAGAAAGCGAGCTCAGATTTCGCGCTGTAGATTGGCCGGGAAGTGGATCCATTCCATTCCTTTCATGCTGCTTC
TAATCTTCTTCGTTCTCTGGTGGTTCTCTTATCCAGTGAATTTGGTGATCAAGGATCGAGAAATTATAGCAGTTTATGCTCACGAATTTCTGGAAATGCCAAAGTATATT
GATCATGTCGAACTTGCAAGCTTAGGAGAAAGCAGAATGAAGATTGCTTCGAGTCCTCTGAATCCAACAAGCGTTGGCTCTCCAGATGTACGGATTCCAAGTAAGGTCGA
TTGA
Protein sequenceShow/hide protein sequence
MQQRSLSSFRETDDHCSIIFSAAQQDPQGRRTSMDDFDILPVSDHCFATRKRAQISRCRLAGKWIHSIPFMLLLIFFVLWWFSYPVNLVIKDREIIAVYAHEFLEMPKYI
DHVELASLGESRMKIASSPLNPTSVGSPDVRIPSKVD