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Sed0002168 (gene) of Chayote v1 genome

Gene IDSed0002168
OrganismSechium edule (Chayote v1)
DescriptionGag/pol protein
Genome locationLG02:35140748..35141467
RNA-Seq ExpressionSed0002168
SyntenySed0002168
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037371.1 gag/pol protein [Cucumis melo var. makuwa]5.5e-2035.11Show/hide
Query:  KFVLTEECPLIPTPNVPQNVCEAHDRLLNANEKERVYILASVSDILAKKLKNMVNVLEMMRALHKMFGKPS-----------------------------
        +FVL EECP +   N  + V EA++R   ANEK R YILAS+S++LAKK ++M+   E+M +L +MFG+ S                             
Subjt:  KFVLTEECPLIPTPNVPQNVCEAHDRLLNANEKERVYILASVSDILAKKLKNMVNVLEMMRALHKMFGKPS-----------------------------

Query:  -----------------SQIDFNPTTLLDELQTFESMMKVKDKKGEENVVTKNQS-SRTTSSGTKPKGWTFMAKFSKKNNTDWSKNK----------RRS
                         SQI +  TTLL+ELQTFES+MK+K +KGE NV T  +   R ++SG K     FM   S   N  W K K             
Subjt:  -----------------SQIDFNPTTLLDELQTFESMMKVKDKKGEENVVTKNQS-SRTTSSGTKPKGWTFMAKFSKKNNTDWSKNK----------RRS

Query:  LRKVEADKDGKCLYCQKLSHWKKNC
          K   D  G C +C +  HWK+NC
Subjt:  LRKVEADKDGKCLYCQKLSHWKKNC

KAA0044955.1 gag/pol protein [Cucumis melo var. makuwa]1.2e-1932.03Show/hide
Query:  ILIIDEKKFVLTEECPLIPTPNVPQNVCEAHDRLLNANEKERVYILASVSDILAKKLKNMVNVLEMMRALHKMFGKPSSQID------------------
        +LIID+ +FVL EECP +P  N  + V E ++R   ANEK R YILAS+S++LAKK ++M+   E+M +L +MFG+ S QI                   
Subjt:  ILIIDEKKFVLTEECPLIPTPNVPQNVCEAHDRLLNANEKERVYILASVSDILAKKLKNMVNVLEMMRALHKMFGKPSSQID------------------

Query:  ---------------------------------------------------FNPTTLLDELQTFESMMKVKDKKGEENVVTKNQS-SRTTSSGTKPKGWT
                                                           +  TTLL+ELQTFES+MK+K +KGE NV T  +   R ++SGTK     
Subjt:  ---------------------------------------------------FNPTTLLDELQTFESMMKVKDKKGEENVVTKNQS-SRTTSSGTKPKGWT

Query:  FMAKFSKKNNTDWSKNK-----------RRSLRKVEADKDGKCLYCQKLSHWKKNC
          +  S   N  W K K            ++ +K +A K G C +C +  HWK+NC
Subjt:  FMAKFSKKNNTDWSKNK-----------RRSLRKVEADKDGKCLYCQKLSHWKKNC

KAA0048404.1 gag/pol protein [Cucumis melo var. makuwa]1.2e-1932.03Show/hide
Query:  ILIIDEKKFVLTEECPLIPTPNVPQNVCEAHDRLLNANEKERVYILASVSDILAKKLKNMVNVLEMMRALHKMFGKPSSQID------------------
        +LIID+ +FVL EECP +P  N  + V E ++R   ANEK R YILAS+S++LAKK ++M+   E+M +L +MFG+ S QI                   
Subjt:  ILIIDEKKFVLTEECPLIPTPNVPQNVCEAHDRLLNANEKERVYILASVSDILAKKLKNMVNVLEMMRALHKMFGKPSSQID------------------

Query:  ---------------------------------------------------FNPTTLLDELQTFESMMKVKDKKGEENVVTKNQS-SRTTSSGTKPKGWT
                                                           +  TTLL+ELQTFES+MK+K +KGE NV T  +   R ++SGTK     
Subjt:  ---------------------------------------------------FNPTTLLDELQTFESMMKVKDKKGEENVVTKNQS-SRTTSSGTKPKGWT

Query:  FMAKFSKKNNTDWSKNK-----------RRSLRKVEADKDGKCLYCQKLSHWKKNC
          +  S   N  W K K            ++ +K +A K G C +C +  HWK+NC
Subjt:  FMAKFSKKNNTDWSKNK-----------RRSLRKVEADKDGKCLYCQKLSHWKKNC

KAA0055498.1 gag-pol fusion protein [Cucumis melo var. makuwa]1.6e-2237.32Show/hide
Query:  ILIIDEKKFVLTEECPLIPTPNVPQNVCEAHDRLLNANEKERVYILASVSDILAKKLKNMVNVLEMMRALHKMFGKPSSQID------------------
        +LIID+ +FVL EECP +PT N  + + E ++R   ANEK R YIL S+S++LAKK ++++   E+M +L +MF    + ID                  
Subjt:  ILIIDEKKFVLTEECPLIPTPNVPQNVCEAHDRLLNANEKERVYILASVSDILAKKLKNMVNVLEMMRALHKMFGKPSSQID------------------

Query:  -----------FNPTTLLDELQTFESMMKVKDKKGEENVVTKNQS-SRTTSSGTKP-KGWTFMAKFSKKNNTDWSKNK---RRSLRKVEADKDGKCLYCQ
                   +  TTLL+ELQTFES+MK+K +KGE NV T  +   R ++SGTK     +   K+ KKN    +K      ++ +K +A K G C +C 
Subjt:  -----------FNPTTLLDELQTFESMMKVKDKKGEENVVTKNQS-SRTTSSGTKP-KGWTFMAKFSKKNNTDWSKNK---RRSLRKVEADKDGKCLYCQ

Query:  KLSHWKKNC
        +  HWK+NC
Subjt:  KLSHWKKNC

TYK14550.1 gag/pol protein [Cucumis melo var. makuwa]1.2e-1932.03Show/hide
Query:  ILIIDEKKFVLTEECPLIPTPNVPQNVCEAHDRLLNANEKERVYILASVSDILAKKLKNMVNVLEMMRALHKMFGKPSSQID------------------
        +LIID+ +FVL EECP +P  N  + V E ++R   ANEK R YILAS+S++LAKK ++M+   E+M +L +MFG+ S QI                   
Subjt:  ILIIDEKKFVLTEECPLIPTPNVPQNVCEAHDRLLNANEKERVYILASVSDILAKKLKNMVNVLEMMRALHKMFGKPSSQID------------------

Query:  ---------------------------------------------------FNPTTLLDELQTFESMMKVKDKKGEENVVTKNQS-SRTTSSGTKPKGWT
                                                           +  TTLL+ELQTFES+MK+K +KGE NV T  +   R ++SGTK     
Subjt:  ---------------------------------------------------FNPTTLLDELQTFESMMKVKDKKGEENVVTKNQS-SRTTSSGTKPKGWT

Query:  FMAKFSKKNNTDWSKNK-----------RRSLRKVEADKDGKCLYCQKLSHWKKNC
          +  S   N  W K K            ++ +K +A K G C +C +  HWK+NC
Subjt:  FMAKFSKKNNTDWSKNK-----------RRSLRKVEADKDGKCLYCQKLSHWKKNC

TrEMBL top hitse value%identityAlignment
A0A5A7SMH8 Gag/pol protein6.0e-2032.03Show/hide
Query:  ILIIDEKKFVLTEECPLIPTPNVPQNVCEAHDRLLNANEKERVYILASVSDILAKKLKNMVNVLEMMRALHKMFGKPSSQID------------------
        +LIID+ +FVL EECP +P  N  + V E ++R   ANEK R YILAS+S++LAKK ++M+   E+M +L +MFG+ S QI                   
Subjt:  ILIIDEKKFVLTEECPLIPTPNVPQNVCEAHDRLLNANEKERVYILASVSDILAKKLKNMVNVLEMMRALHKMFGKPSSQID------------------

Query:  ---------------------------------------------------FNPTTLLDELQTFESMMKVKDKKGEENVVTKNQS-SRTTSSGTKPKGWT
                                                           +  TTLL+ELQTFES+MK+K +KGE NV T  +   R ++SGTK     
Subjt:  ---------------------------------------------------FNPTTLLDELQTFESMMKVKDKKGEENVVTKNQS-SRTTSSGTKPKGWT

Query:  FMAKFSKKNNTDWSKNK-----------RRSLRKVEADKDGKCLYCQKLSHWKKNC
          +  S   N  W K K            ++ +K +A K G C +C +  HWK+NC
Subjt:  FMAKFSKKNNTDWSKNK-----------RRSLRKVEADKDGKCLYCQKLSHWKKNC

A0A5A7T706 Gag/pol protein2.7e-2035.11Show/hide
Query:  KFVLTEECPLIPTPNVPQNVCEAHDRLLNANEKERVYILASVSDILAKKLKNMVNVLEMMRALHKMFGKPS-----------------------------
        +FVL EECP +   N  + V EA++R   ANEK R YILAS+S++LAKK ++M+   E+M +L +MFG+ S                             
Subjt:  KFVLTEECPLIPTPNVPQNVCEAHDRLLNANEKERVYILASVSDILAKKLKNMVNVLEMMRALHKMFGKPS-----------------------------

Query:  -----------------SQIDFNPTTLLDELQTFESMMKVKDKKGEENVVTKNQS-SRTTSSGTKPKGWTFMAKFSKKNNTDWSKNK----------RRS
                         SQI +  TTLL+ELQTFES+MK+K +KGE NV T  +   R ++SG K     FM   S   N  W K K             
Subjt:  -----------------SQIDFNPTTLLDELQTFESMMKVKDKKGEENVVTKNQS-SRTTSSGTKPKGWTFMAKFSKKNNTDWSKNK----------RRS

Query:  LRKVEADKDGKCLYCQKLSHWKKNC
          K   D  G C +C +  HWK+NC
Subjt:  LRKVEADKDGKCLYCQKLSHWKKNC

A0A5A7UKD1 Gag-pol fusion protein7.6e-2337.32Show/hide
Query:  ILIIDEKKFVLTEECPLIPTPNVPQNVCEAHDRLLNANEKERVYILASVSDILAKKLKNMVNVLEMMRALHKMFGKPSSQID------------------
        +LIID+ +FVL EECP +PT N  + + E ++R   ANEK R YIL S+S++LAKK ++++   E+M +L +MF    + ID                  
Subjt:  ILIIDEKKFVLTEECPLIPTPNVPQNVCEAHDRLLNANEKERVYILASVSDILAKKLKNMVNVLEMMRALHKMFGKPSSQID------------------

Query:  -----------FNPTTLLDELQTFESMMKVKDKKGEENVVTKNQS-SRTTSSGTKP-KGWTFMAKFSKKNNTDWSKNK---RRSLRKVEADKDGKCLYCQ
                   +  TTLL+ELQTFES+MK+K +KGE NV T  +   R ++SGTK     +   K+ KKN    +K      ++ +K +A K G C +C 
Subjt:  -----------FNPTTLLDELQTFESMMKVKDKKGEENVVTKNQS-SRTTSSGTKP-KGWTFMAKFSKKNNTDWSKNK---RRSLRKVEADKDGKCLYCQ

Query:  KLSHWKKNC
        +  HWK+NC
Subjt:  KLSHWKKNC

A0A5D3CPJ6 Gag/pol protein6.0e-2032.03Show/hide
Query:  ILIIDEKKFVLTEECPLIPTPNVPQNVCEAHDRLLNANEKERVYILASVSDILAKKLKNMVNVLEMMRALHKMFGKPSSQID------------------
        +LIID+ +FVL EECP +P  N  + V E ++R   ANEK R YILAS+S++LAKK ++M+   E+M +L +MFG+ S QI                   
Subjt:  ILIIDEKKFVLTEECPLIPTPNVPQNVCEAHDRLLNANEKERVYILASVSDILAKKLKNMVNVLEMMRALHKMFGKPSSQID------------------

Query:  ---------------------------------------------------FNPTTLLDELQTFESMMKVKDKKGEENVVTKNQS-SRTTSSGTKPKGWT
                                                           +  TTLL+ELQTFES+MK+K +KGE NV T  +   R ++SGTK     
Subjt:  ---------------------------------------------------FNPTTLLDELQTFESMMKVKDKKGEENVVTKNQS-SRTTSSGTKPKGWT

Query:  FMAKFSKKNNTDWSKNK-----------RRSLRKVEADKDGKCLYCQKLSHWKKNC
          +  S   N  W K K            ++ +K +A K G C +C +  HWK+NC
Subjt:  FMAKFSKKNNTDWSKNK-----------RRSLRKVEADKDGKCLYCQKLSHWKKNC

A0A5D3DS88 Gag/pol protein6.0e-2032.03Show/hide
Query:  ILIIDEKKFVLTEECPLIPTPNVPQNVCEAHDRLLNANEKERVYILASVSDILAKKLKNMVNVLEMMRALHKMFGKPSSQID------------------
        +LIID+ +FVL EECP +P  N  + V E ++R   ANEK R YILAS+S++LAKK ++M+   E+M +L +MFG+ S QI                   
Subjt:  ILIIDEKKFVLTEECPLIPTPNVPQNVCEAHDRLLNANEKERVYILASVSDILAKKLKNMVNVLEMMRALHKMFGKPSSQID------------------

Query:  ---------------------------------------------------FNPTTLLDELQTFESMMKVKDKKGEENVVTKNQS-SRTTSSGTKPKGWT
                                                           +  TTLL+ELQTFES+MK+K +KGE NV T  +   R ++SGTK     
Subjt:  ---------------------------------------------------FNPTTLLDELQTFESMMKVKDKKGEENVVTKNQS-SRTTSSGTKPKGWT

Query:  FMAKFSKKNNTDWSKNK-----------RRSLRKVEADKDGKCLYCQKLSHWKKNC
          +  S   N  W K K            ++ +K +A K G C +C +  HWK+NC
Subjt:  FMAKFSKKNNTDWSKNK-----------RRSLRKVEADKDGKCLYCQKLSHWKKNC

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATTCTTATTATCGATGAGAAAAAGTTTGTTCTGACGGAAGAATGTCCTCTGATACCAACACCTAATGTACCACAAAATGTTTGTGAGGCGCATGACCGTTTGCTGAA
TGCTAATGAAAAGGAAAGGGTCTATATCTTGGCAAGTGTCTCGGACATTCTGGCCAAGAAACTAAAGAACATGGTAAATGTTTTAGAGATGATGAGAGCCCTCCATAAGA
TGTTTGGGAAACCATCGTCTCAGATTGATTTTAACCCCACTACACTTCTTGATGAACTTCAAACCTTCGAGTCCATGATGAAAGTCAAGGACAAAAAAGGGGAGGAAAAT
GTTGTCACCAAGAATCAGAGTTCTAGAACCACGAGTTCAGGAACCAAGCCTAAAGGTTGGACCTTCATGGCAAAGTTTTCAAAGAAGAACAATACTGATTGGAGCAAGAA
TAAGCGCAGATCTCTAAGGAAGGTCGAGGCCGATAAGGATGGAAAATGTTTATATTGTCAAAAGCTTAGTCATTGGAAAAAGAATTGTCTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGATTCTTATTATCGATGAGAAAAAGTTTGTTCTGACGGAAGAATGTCCTCTGATACCAACACCTAATGTACCACAAAATGTTTGTGAGGCGCATGACCGTTTGCTGAA
TGCTAATGAAAAGGAAAGGGTCTATATCTTGGCAAGTGTCTCGGACATTCTGGCCAAGAAACTAAAGAACATGGTAAATGTTTTAGAGATGATGAGAGCCCTCCATAAGA
TGTTTGGGAAACCATCGTCTCAGATTGATTTTAACCCCACTACACTTCTTGATGAACTTCAAACCTTCGAGTCCATGATGAAAGTCAAGGACAAAAAAGGGGAGGAAAAT
GTTGTCACCAAGAATCAGAGTTCTAGAACCACGAGTTCAGGAACCAAGCCTAAAGGTTGGACCTTCATGGCAAAGTTTTCAAAGAAGAACAATACTGATTGGAGCAAGAA
TAAGCGCAGATCTCTAAGGAAGGTCGAGGCCGATAAGGATGGAAAATGTTTATATTGTCAAAAGCTTAGTCATTGGAAAAAGAATTGTCTTTGA
Protein sequenceShow/hide protein sequence
MILIIDEKKFVLTEECPLIPTPNVPQNVCEAHDRLLNANEKERVYILASVSDILAKKLKNMVNVLEMMRALHKMFGKPSSQIDFNPTTLLDELQTFESMMKVKDKKGEEN
VVTKNQSSRTTSSGTKPKGWTFMAKFSKKNNTDWSKNKRRSLRKVEADKDGKCLYCQKLSHWKKNCL