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Sed0002184 (gene) of Chayote v1 genome

Gene IDSed0002184
OrganismSechium edule (Chayote v1)
Descriptionprotein LITTLE ZIPPER 3-like
Genome locationLG02:51706630..51707759
RNA-Seq ExpressionSed0002184
SyntenySed0002184
Gene Ontology termsNA
InterPro domainsIPR039312 - Protein LITTLE ZIPPER


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022924351.1 protein LITTLE ZIPPER 1-like [Cucurbita moschata]5.5e-1761.76Show/hide
Query:  MCDSSRFILLRSYSGFRHR----RFHSRSRRMRF-------AGVKAGMEIEIENLKLHMKNQSIIEENERLRNKAFLLHEENQVLQSQLRGFSDQKSQPN
        MCDSSR  L RS+   RHR    R +   RRMRF       AGVK  +E+EI+NLKL+M+NQSIIEENERLR KAFLLH+ENQVL SQL+ FS QK QP+
Subjt:  MCDSSRFILLRSYSGFRHR----RFHSRSRRMRF-------AGVKAGMEIEIENLKLHMKNQSIIEENERLRNKAFLLHEENQVLQSQLRGFSDQKSQPN

Query:  SD
        S+
Subjt:  SD
XP_022974108.1 protein LITTLE ZIPPER 3-like [Cucurbita maxima]2.9e-1865Show/hide
Query:  MCDSSRFILL---RSYSGFRHR----RFHSRSRRMRFAGVKAGM--EIEIENLKLHMKNQSIIEENERLRNKAFLLHEENQVLQSQLRGFSDQKSQPNSD
        MCDSSRF+LL   RS    RHR    R +   RRM+FA  + G+  E+EIENLKL+M+NQSIIEENERLR KAFLLH+ENQVL SQL+ FS +KSQPNSD
Subjt:  MCDSSRFILL---RSYSGFRHR----RFHSRSRRMRFAGVKAGM--EIEIENLKLHMKNQSIIEENERLRNKAFLLHEENQVLQSQLRGFSDQKSQPNSD
XP_022980450.1 protein LITTLE ZIPPER 1-like [Cucurbita maxima]7.2e-1761.76Show/hide
Query:  MCDSSRFILLRSYSGFRHR----RFHSRSRRMRF-------AGVKAGMEIEIENLKLHMKNQSIIEENERLRNKAFLLHEENQVLQSQLRGFSDQKSQPN
        MCDSSR  L RS+   RHR    R +   RRMRF       AGVK  +E+EI+NLKL+M+NQSIIEENERLR KAFLLH+ENQVL SQL+ FS QK QP 
Subjt:  MCDSSRFILLRSYSGFRHR----RFHSRSRRMRF-------AGVKAGMEIEIENLKLHMKNQSIIEENERLRNKAFLLHEENQVLQSQLRGFSDQKSQPN

Query:  SD
        S+
Subjt:  SD
XP_023540138.1 protein LITTLE ZIPPER 3 [Cucurbita pepo subsp. pepo]6.5e-1865Show/hide
Query:  MCDSSRFILL---RSYSGFRHR----RFHSRSRRMRFAGVKAGM--EIEIENLKLHMKNQSIIEENERLRNKAFLLHEENQVLQSQLRGFSDQKSQPNSD
        MCDSSRF+LL   RS    RHR    R +   RRMRFA  + G+  E+EIENLKL+M+NQSIIEENERLR KAFLLH+ENQVL SQL+  S +KSQPNSD
Subjt:  MCDSSRFILL---RSYSGFRHR----RFHSRSRRMRFAGVKAGM--EIEIENLKLHMKNQSIIEENERLRNKAFLLHEENQVLQSQLRGFSDQKSQPNSD
XP_038901104.1 protein LITTLE ZIPPER 1-like [Benincasa hispida]2.5e-1762.5Show/hide
Query:  MCDSSRFILLRSYSGFRHR----RFHSRSRRMRFAGVKAGMEIEIENLKLHMKNQSIIEENERLRNKAFLLHEENQVLQSQLRGFSDQK-SQPNSD
        MCDSSR IL  SY   RHR    R +   RRM+FA  +   E+EI+NLKL+M+NQSIIEENERLR KAFLLH+ENQVL S+L+ FS+ K SQP+SD
Subjt:  MCDSSRFILLRSYSGFRHR----RFHSRSRRMRFAGVKAGMEIEIENLKLHMKNQSIIEENERLRNKAFLLHEENQVLQSQLRGFSDQK-SQPNSD
TrEMBL top hitse value%identityAlignment
A0A6J1CZF0 protein LITTLE ZIPPER 2-like2.1e-1455.88Show/hide
Query:  MCDSSRFILL---RSYSGFRHR------RFHSRSRRMRFAGVKA-----GMEIEIENLKLHMKNQSIIEENERLRNKAFLLHEENQVLQSQLRGFSDQKS
        MCDSSR + +   RS  G RHR      R H   RRMR    +A      +E+EI+NLKL M+NQSIIEENERLR +AFLLH+ENQVL SQ++ FS+QK 
Subjt:  MCDSSRFILL---RSYSGFRHR------RFHSRSRRMRFAGVKA-----GMEIEIENLKLHMKNQSIIEENERLRNKAFLLHEENQVLQSQLRGFSDQKS

Query:  QP
        QP
Subjt:  QP
A0A6J1E9A8 protein LITTLE ZIPPER 1-like2.7e-1761.76Show/hide
Query:  MCDSSRFILLRSYSGFRHR----RFHSRSRRMRF-------AGVKAGMEIEIENLKLHMKNQSIIEENERLRNKAFLLHEENQVLQSQLRGFSDQKSQPN
        MCDSSR  L RS+   RHR    R +   RRMRF       AGVK  +E+EI+NLKL+M+NQSIIEENERLR KAFLLH+ENQVL SQL+ FS QK QP+
Subjt:  MCDSSRFILLRSYSGFRHR----RFHSRSRRMRF-------AGVKAGMEIEIENLKLHMKNQSIIEENERLRNKAFLLHEENQVLQSQLRGFSDQKSQPN

Query:  SD
        S+
Subjt:  SD
A0A6J1F7Z1 protein LITTLE ZIPPER 3-like3.0e-1662Show/hide
Query:  MCDSSRFILL---RSYSGFRHR----RFHSRSRRMRFAGVKAGM--EIEIENLKLHMKNQSIIEENERLRNKAFLLHEENQVLQSQLRGFSDQKSQPNSD
        MCDSSRF+LL   RS    RH     R +   RRMRFA  + G+  E+EI+NLKL+M+NQSIIEENERLR KAFLLH+ENQVL SQL+  S +KSQ NSD
Subjt:  MCDSSRFILL---RSYSGFRHR----RFHSRSRRMRFAGVKAGM--EIEIENLKLHMKNQSIIEENERLRNKAFLLHEENQVLQSQLRGFSDQKSQPNSD
A0A6J1IF90 protein LITTLE ZIPPER 3-like1.4e-1865Show/hide
Query:  MCDSSRFILL---RSYSGFRHR----RFHSRSRRMRFAGVKAGM--EIEIENLKLHMKNQSIIEENERLRNKAFLLHEENQVLQSQLRGFSDQKSQPNSD
        MCDSSRF+LL   RS    RHR    R +   RRM+FA  + G+  E+EIENLKL+M+NQSIIEENERLR KAFLLH+ENQVL SQL+ FS +KSQPNSD
Subjt:  MCDSSRFILL---RSYSGFRHR----RFHSRSRRMRFAGVKAGM--EIEIENLKLHMKNQSIIEENERLRNKAFLLHEENQVLQSQLRGFSDQKSQPNSD
A0A6J1IWC5 protein LITTLE ZIPPER 1-like3.5e-1761.76Show/hide
Query:  MCDSSRFILLRSYSGFRHR----RFHSRSRRMRF-------AGVKAGMEIEIENLKLHMKNQSIIEENERLRNKAFLLHEENQVLQSQLRGFSDQKSQPN
        MCDSSR  L RS+   RHR    R +   RRMRF       AGVK  +E+EI+NLKL+M+NQSIIEENERLR KAFLLH+ENQVL SQL+ FS QK QP 
Subjt:  MCDSSRFILLRSYSGFRHR----RFHSRSRRMRF-------AGVKAGMEIEIENLKLHMKNQSIIEENERLRNKAFLLHEENQVLQSQLRGFSDQKSQPN

Query:  SD
        S+
Subjt:  SD
SwissProt top hitse value%identityAlignment
F4IG60 Protein LITTLE ZIPPER 12.5e-0443.33Show/hide
Query:  KMCDSS---------RFIL-LRSYSGFRHRRFHSRSRRMRFAGVKAGMEIEIENLKLHMKNQSIIEENERLRNKAFLLHEENQVLQSQLR
        KMC SS         R +L L++ S  R  R  SR RRM     +   ++E+ NLKL+++NQ+II ENE+L+ KA LLH+EN+ L S L+
Subjt:  KMCDSS---------RFIL-LRSYSGFRHRRFHSRSRRMRFAGVKAGMEIEIENLKLHMKNQSIIEENERLRNKAFLLHEENQVLQSQLR
Q9LZX5 Protein LITTLE ZIPPER 25.0e-0550.88Show/hide
Query:  HRRFHSRSRRMRFAGVKAGMEIEIENLKLHMKNQSIIEENERLRNKAFLLHEENQVL
        H R  + +RR R   +K   E+E+ NLKL ++NQSII ENE L+ KA LLH EN  L
Subjt:  HRRFHSRSRRMRFAGVKAGMEIEIENLKLHMKNQSIIEENERLRNKAFLLHEENQVL
Arabidopsis top hitse value%identityAlignment
AT2G45450.1 protein binding1.8e-0543.33Show/hide
Query:  KMCDSS---------RFIL-LRSYSGFRHRRFHSRSRRMRFAGVKAGMEIEIENLKLHMKNQSIIEENERLRNKAFLLHEENQVLQSQLR
        KMC SS         R +L L++ S  R  R  SR RRM     +   ++E+ NLKL+++NQ+II ENE+L+ KA LLH+EN+ L S L+
Subjt:  KMCDSS---------RFIL-LRSYSGFRHRRFHSRSRRMRFAGVKAGMEIEIENLKLHMKNQSIIEENERLRNKAFLLHEENQVLQSQLR
AT3G60890.1 protein binding3.6e-0650.88Show/hide
Query:  HRRFHSRSRRMRFAGVKAGMEIEIENLKLHMKNQSIIEENERLRNKAFLLHEENQVL
        H R  + +RR R   +K   E+E+ NLKL ++NQSII ENE L+ KA LLH EN  L
Subjt:  HRRFHSRSRRMRFAGVKAGMEIEIENLKLHMKNQSIIEENERLRNKAFLLHEENQVL
AT3G60890.2 protein binding1.4e-0544.59Show/hide
Query:  MCDSSRFILLRSYSGFRHRRFHSRSRRMRFAGVKAGMEIEIENLKLHMKNQSIIEENERLRNKAFLLHEENQVL
        M  +S  I  +S +    R  +  SRR R   +K   E+E+ NLKL ++NQSII ENE L+ KA LLH EN  L
Subjt:  MCDSSRFILLRSYSGFRHRRFHSRSRRMRFAGVKAGMEIEIENLKLHMKNQSIIEENERLRNKAFLLHEENQVL

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCATCTTCAACACCGCCGCCGGAAAATGTGCGATTCTTCTCGATTCATTCTTCTCCGTTCCTATTCAGGTTTCCGCCATCGCCGATTTCACAGCCGTTCCAGGAGGAT
GAGATTCGCCGGCGTTAAGGCGGGAATGGAGATCGAGATCGAGAATTTGAAACTGCACATGAAGAATCAAAGCATTATTGAAGAGAACGAGAGGCTGAGAAATAAGGCGT
TTCTTCTTCACGAGGAGAATCAGGTTTTGCAATCTCAACTTCGGGGTTTTTCTGACCAAAAATCGCAGCCTAATTCTGATTAG
mRNA sequenceShow/hide mRNA sequence
TTCCACTTCAAAGTTAGAATTTGATCTGTGAAATCAGTATTTATAATCTACTTCTTCCGACTTATACTAAAAAAACACCCTAACTAATTCTTGTTGGCCTTACCCTATCA
TGGCTTACTCAAGAATGTAAAAATAATATGTTTTTAAAAAAGTGCTTTTAAATTGTGTCAACCCTTCAAATTAAGTTTTATTTTTATTTTTTAATTTTAAAAGATAATTT
TATCATCTTCTAATGTATGCATTCATCATGGTCATCTACTTGCTGCCCGCTTCGCCATAATGAGTTTCCAACTGAAATCATTGCAATGAAACAACCTCTCTTTCTTCTCT
TCCATTTCCTCTTCTCTTTATACTCTCAATTCCATTTCTCCGATTTCGAACAATGCATCTTCAACACCGCCGCCGGAAAATGTGCGATTCTTCTCGATTCATTCTTCTCC
GTTCCTATTCAGGTTTCCGCCATCGCCGATTTCACAGCCGTTCCAGGAGGATGAGATTCGCCGGCGTTAAGGCGGGAATGGAGATCGAGATCGAGAATTTGAAACTGCAC
ATGAAGAATCAAAGCATTATTGAAGAGAACGAGAGGCTGAGAAATAAGGCGTTTCTTCTTCACGAGGAGAATCAGGTTTTGCAATCTCAACTTCGGGGTTTTTCTGACCA
AAAATCGCAGCCTAATTCTGATTAGATTAGAGCTTCTGGATGCGAAATTGAATCGTATGTATCGATCGAGTTCATGATCTCGATCGGTGATTTTCTTGCTACGGATTCCT
TTCTGTGCGATTCCTTGGGTTCGTAATCTGATTTTTTGAGAATAAATTAGGTTTTGATCTACAGGGGGAGGGAATCAATAATATTTTAGGATAAATTTGTGTGCAGATGG
AATTGGAAATACAGAAATATGTACTGCCGAATTTGATAGATCTGATTCTAAATTCTCCATTGACGAATCTTTCTTTATTTGATGAGACTCTGTTGAAGAAGCTTGGTTGG
TTGGCTTGATCTTGAAGCAAAAGAATGAATCGGTTTTTGGACCTAAGACTTTGAATCGAA
Protein sequenceShow/hide protein sequence
MHLQHRRRKMCDSSRFILLRSYSGFRHRRFHSRSRRMRFAGVKAGMEIEIENLKLHMKNQSIIEENERLRNKAFLLHEENQVLQSQLRGFSDQKSQPNSD