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Sed0002185 (gene) of Chayote v1 genome

Gene IDSed0002185
OrganismSechium edule (Chayote v1)
DescriptionDNA-directed RNA polymerase II subunit RPB1-like protein
Genome locationLG14:16192366..16192993
RNA-Seq ExpressionSed0002185
SyntenySed0002185
Gene Ontology termsGO:0048364 - root development (biological process)
GO:0050789 - regulation of biological process (biological process)
GO:0110165 - cellular anatomical structure (cellular component)
InterPro domainsIPR033250 - C-terminally encoded peptide


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8647497.1 hypothetical protein Csa_004238, partial [Cucumis sativus]2.8e-1860.4Show/hide
Query:  MKTTLRLSGV-FILFLVLCLNHESIYVECRHLKSSKC--KCSKLV--SPPAVNLGAKKTATGDVIFAGNRQQFKTSKAEQPQDFRPTSPGHSPGVGHHIN
        MK   R  GV  I+ LVLCL++E +YVECRHLKSS+   KCSK +  SPP      K         AGN QQF T KAE PQDFRPTSPGHSPGVGHHIN
Subjt:  MKTTLRLSGV-FILFLVLCLNHESIYVECRHLKSSKC--KCSKLV--SPPAVNLGAKKTATGDVIFAGNRQQFKTSKAEQPQDFRPTSPGHSPGVGHHIN

Query:  N
        N
Subjt:  N

KAF5736125.1 hypothetical protein HS088_TW14G00260 [Tripterygium wilfordii]7.7e-0850.56Show/hide
Query:  FILFLVLCLNHESIYVE--CRHLKSSKC-KCSKLVSPPAVNLGAKKTATGDVIFAGNRQQFKTSKAEQPQDFRPTSPGHSPGVGHHINN
        FIL L+LC  HE ++VE   RHLKS  C KC+       +N  AK    GD    G+ Q+ +TSK E    FRPT+PGHSPGVGH INN
Subjt:  FILFLVLCLNHESIYVE--CRHLKSSKC-KCSKLVSPPAVNLGAKKTATGDVIFAGNRQQFKTSKAEQPQDFRPTSPGHSPGVGHHINN

KAF7136307.1 hypothetical protein RHSIM_Rhsim08G0102100 [Rhododendron simsii]2.0e-0841.49Show/hide
Query:  TLRLSGVFILFLVLCLNHESIYVECRHLKSSKCK-CSKLVSPPAVNLGAKKTATGDVIFAGNRQQFKTSKAEQPQDFRPTSPGHSPGVGHHINN
        ++   G  +L L L L +E++ V+ R LK   CK C +  S   +NL   +T TG  + +  +   +TSK E+ +DFRPT PGHSPGVGH +NN
Subjt:  TLRLSGVFILFLVLCLNHESIYVECRHLKSSKCK-CSKLVSPPAVNLGAKKTATGDVIFAGNRQQFKTSKAEQPQDFRPTSPGHSPGVGHHINN

KAG6595044.1 hypothetical protein SDJN03_11597, partial [Cucurbita argyrosperma subsp. sororia]1.5e-3579.8Show/hide
Query:  MKTTLRLSG--VFILFLVLCLNHESIYVECRHLKSSKC-KCSKLVSPPAVNLGAKKTATGDVIFAGNRQQFKTSKAEQPQDFRPTSPGHSPGVGHHINN
        MKTT RLSG  VFILFL+LCL+HE +YVECRHLKSS+C KC+K ++PPAVNLG KK   GDV  AGNRQ+FKTSKAEQPQDFRPTSPGHSPGVGHHINN
Subjt:  MKTTLRLSG--VFILFLVLCLNHESIYVECRHLKSSKC-KCSKLVSPPAVNLGAKKTATGDVIFAGNRQQFKTSKAEQPQDFRPTSPGHSPGVGHHINN

TKY55726.1 hypothetical protein E2542_SST20145 [Spatholobus suberectus]1.0e-0743.43Show/hide
Query:  MKTTLRLSGVFILFLVLCLNHESIYVECRHLKSSKCK-CSKLVSPPAVNLGAKKTATGD--VIFAGNRQQFKTSKAEQPQDFRPTSPGHSPGVGHHINN
        M+ T   +  F+LFL L L+H+ ++VE RHL+S  CK C+K    P  N  +     GD  +   G  Q+       +  DFRPTSPGHSPGVGH INN
Subjt:  MKTTLRLSGVFILFLVLCLNHESIYVECRHLKSSKCK-CSKLVSPPAVNLGAKKTATGD--VIFAGNRQQFKTSKAEQPQDFRPTSPGHSPGVGHHINN

TrEMBL top hitse value%identityAlignment
A0A061DGB8 tRNA Delta(2)-isopentenylpyrophosphate transferase, putative1.4e-0751.06Show/hide
Query:  RLSGVFILFLVLCLNHE-SIY-VECRHLKSSKC-KCSKLVSPPAVNLGAKKTATGDVIFAGNRQQFKTSKAEQPQDFRPTSPGHSPGVGHHINN
        RL  V +L LVL L  E  +Y VE RHL+S  C KCS+     A     K T  G     G+ Q+ +TSKAE   DFRPTSPGHSPGVGH I N
Subjt:  RLSGVFILFLVLCLNHE-SIY-VECRHLKSSKC-KCSKLVSPPAVNLGAKKTATGDVIFAGNRQQFKTSKAEQPQDFRPTSPGHSPGVGHHINN

A0A0A0KGB6 Uncharacterized protein9.1e-1559.3Show/hide
Query:  LVLCLNHESIYVECRHLKSSKC--KCSKLV--SPPAVNLGAKKTATGDVIFAGNRQQFKTSKAEQPQDFRPTSPGHSPGVGHHINN
        +V  + +E +YVECRHLKSS+   KCSK +  SPP      K         AGN QQF T KAE PQDFRPTSPGHSPGVGHHINN
Subjt:  LVLCLNHESIYVECRHLKSSKC--KCSKLV--SPPAVNLGAKKTATGDVIFAGNRQQFKTSKAEQPQDFRPTSPGHSPGVGHHINN

A0A2C9URG2 Uncharacterized protein8.3e-0845.83Show/hide
Query:  LRLSGVFILFLVLCLNHESIYVECRHLKSSKC--KCSKLVSPPAVNLG--AKKTATGDVIFAGNRQQFKTSKAEQPQDFRPTSPGHSPGVGHHINN
        +R+ G  I  LVL L HE + VE RHLK  K   KC +L    ++N+    +K   G         Q KTSK +   DFRPT PGHSPGVGH INN
Subjt:  LRLSGVFILFLVLCLNHESIYVECRHLKSSKC--KCSKLVSPPAVNLG--AKKTATGDVIFAGNRQQFKTSKAEQPQDFRPTSPGHSPGVGHHINN

A0A7J7CPU4 Uncharacterized protein3.7e-0850.56Show/hide
Query:  FILFLVLCLNHESIYVE--CRHLKSSKC-KCSKLVSPPAVNLGAKKTATGDVIFAGNRQQFKTSKAEQPQDFRPTSPGHSPGVGHHINN
        FIL L+LC  HE ++VE   RHLKS  C KC+       +N  AK    GD    G+ Q+ +TSK E    FRPT+PGHSPGVGH INN
Subjt:  FILFLVLCLNHESIYVE--CRHLKSSKC-KCSKLVSPPAVNLGAKKTATGDVIFAGNRQQFKTSKAEQPQDFRPTSPGHSPGVGHHINN

W9R6N3 Uncharacterized protein4.1e-0750.65Show/hide
Query:  HESIYVECRHLKSSKC-KCSKLVSPPAVNLGAKKTATGDVIFAGNRQQFKTSKAEQPQDFRPTSPGHSPGVGHHINN
        HE I VE RHLKS++  +CSK         G ++ +T    +A +R + +TSKAE   DFRPT+PGHSPGVGH INN
Subjt:  HESIYVECRHLKSSKC-KCSKLVSPPAVNLGAKKTATGDVIFAGNRQQFKTSKAEQPQDFRPTSPGHSPGVGHHINN

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGACAACTCTAAGGCTATCTGGTGTTTTCATTCTTTTCTTAGTTTTATGTTTAAATCATGAGAGTATTTACGTAGAATGCCGGCATCTGAAATCATCGAAATGCAA
ATGCTCGAAATTGGTCTCTCCACCAGCAGTTAATCTCGGTGCGAAAAAGACCGCCACCGGGGACGTGATTTTTGCTGGAAATCGTCAACAGTTTAAGACAAGCAAAGCCG
AACAGCCTCAAGACTTTCGTCCCACATCGCCCGGGCACAGTCCTGGAGTTGGCCACCATATCAACAACTGA
mRNA sequenceShow/hide mRNA sequence
ATAGAACCCTAGGTTCAAAGCTTTTCTACACACAAATCTCTCAACTTCAAACCAAAGCTTCTTTTGTTTTCTCTTCTCTCTTTCGGAAAATATACATAAATAATGAAGAC
AACTCTAAGGCTATCTGGTGTTTTCATTCTTTTCTTAGTTTTATGTTTAAATCATGAGAGTATTTACGTAGAATGCCGGCATCTGAAATCATCGAAATGCAAATGCTCGA
AATTGGTCTCTCCACCAGCAGTTAATCTCGGTGCGAAAAAGACCGCCACCGGGGACGTGATTTTTGCTGGAAATCGTCAACAGTTTAAGACAAGCAAAGCCGAACAGCCT
CAAGACTTTCGTCCCACATCGCCCGGGCACAGTCCTGGAGTTGGCCACCATATCAACAACTGAAAAGAAGCTTCTGATGATTCTGTTATCACTGTTTAATTTCACATCCT
GCATTCCGTTGTTTTCTCTCTCTGAAGGTTAAAAAAATATGCATTCCCATGTAAAGTTGTGACTTAAAGATCTATCTTTTTCATAAACGGTAATTATCCGTGTTATATTC
TTTACTAAATTGTAATTTAATTGTTCATTATGCGCCAATTTTGGAGGTCGCTATCTTGATTAAGAATCAAAAAAAGGG
Protein sequenceShow/hide protein sequence
MKTTLRLSGVFILFLVLCLNHESIYVECRHLKSSKCKCSKLVSPPAVNLGAKKTATGDVIFAGNRQQFKTSKAEQPQDFRPTSPGHSPGVGHHINN