; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Sed0002201 (gene) of Chayote v1 genome

Gene IDSed0002201
OrganismSechium edule (Chayote v1)
DescriptionLYR motif-containing protein 4
Genome locationLG08:35111356..35111972
RNA-Seq ExpressionSed0002201
SyntenySed0002201
Gene Ontology termsNA
InterPro domainsIPR008011 - Complex 1 LYR protein


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6607477.1 LYR motif-containing protein 4, partial [Cucurbita argyrosperma subsp. sororia]2.7e-3183.91Show/hide
Query:  MATPSSSEILSLFRSLLRTARQFPDYNIREYTKRRTVDAFRQNQSLSDPFSVSSAFAAGRAQLELANRQALVYSLYAPKVKSIMDLN
        MA PS SEIL+LFRSLLRTARQFPDYNIREYTKRRT+DAFR+NQSLSDP S+SS +A G+AQLE+A RQALVYSLYAPKVKSIMD+N
Subjt:  MATPSSSEILSLFRSLLRTARQFPDYNIREYTKRRTVDAFRQNQSLSDPFSVSSAFAAGRAQLELANRQALVYSLYAPKVKSIMDLN

KGN64034.1 hypothetical protein Csa_014098 [Cucumis sativus]2.9e-3081.61Show/hide
Query:  MATPSSSEILSLFRSLLRTARQFPDYNIREYTKRRTVDAFRQNQSLSDPFSVSSAFAAGRAQLELANRQALVYSLYAPKVKSIMDLN
        MATPS+SEILSLFRSLLRTARQFPDYNIREY KRRT+D+FR+NQ+LSD  S+SS +A GRAQLE+A RQA+VYSLYAPKVKSIMD+N
Subjt:  MATPSSSEILSLFRSLLRTARQFPDYNIREYTKRRTVDAFRQNQSLSDPFSVSSAFAAGRAQLELANRQALVYSLYAPKVKSIMDLN

XP_009623746.1 LYR motif-containing protein 4 [Nicotiana tomentosiformis]1.6e-2875.86Show/hide
Query:  MATPSSSEILSLFRSLLRTARQFPDYNIREYTKRRTVDAFRQNQSLSDPFSVSSAFAAGRAQLELANRQALVYSLYAPKVKSIMDLN
        MA+PS  E+L+LFRSLL+TARQFPDYNIREYTKRRT+D FRQN+ LSDP  V++AF+ GRAQLE+A RQA+VYSLYAPKVKS+M+LN
Subjt:  MATPSSSEILSLFRSLLRTARQFPDYNIREYTKRRTVDAFRQNQSLSDPFSVSSAFAAGRAQLELANRQALVYSLYAPKVKSIMDLN

XP_022137452.1 LYR motif-containing protein 4 [Momordica charantia]1.7e-3082.95Show/hide
Query:  MATPSSSEILSLFRSLLRTARQFPDYNIREYTKRRTVDAFRQNQSLSDPFSVSSAFAAGRAQLELANRQALVYSLYAPKVKSIMDLNL
        MATPS SEILSLFRSLLRTARQF DYNIREYTKRR +DAFR+N+SLSDP S+SSA+A G+AQLE+A RQALVYSLYAPKVKSIMD+ L
Subjt:  MATPSSSEILSLFRSLLRTARQFPDYNIREYTKRRTVDAFRQNQSLSDPFSVSSAFAAGRAQLELANRQALVYSLYAPKVKSIMDLNL

XP_038894896.1 LYR motif-containing protein 4 [Benincasa hispida]4.1e-3285.23Show/hide
Query:  MATPSSSEILSLFRSLLRTARQFPDYNIREYTKRRTVDAFRQNQSLSDPFSVSSAFAAGRAQLELANRQALVYSLYAPKVKSIMDLNL
        MATPS SE+LSLFRSLLRTARQFPDYNIREYTKRRT+DAFR+NQSLSD  S+SSA+A G+AQLE+A RQALVYSLYAPKVKSIMD+NL
Subjt:  MATPSSSEILSLFRSLLRTARQFPDYNIREYTKRRTVDAFRQNQSLSDPFSVSSAFAAGRAQLELANRQALVYSLYAPKVKSIMDLNL

TrEMBL top hitse value%identityAlignment
A0A0A0LST7 Uncharacterized protein1.4e-3081.61Show/hide
Query:  MATPSSSEILSLFRSLLRTARQFPDYNIREYTKRRTVDAFRQNQSLSDPFSVSSAFAAGRAQLELANRQALVYSLYAPKVKSIMDLN
        MATPS+SEILSLFRSLLRTARQFPDYNIREY KRRT+D+FR+NQ+LSD  S+SS +A GRAQLE+A RQA+VYSLYAPKVKSIMD+N
Subjt:  MATPSSSEILSLFRSLLRTARQFPDYNIREYTKRRTVDAFRQNQSLSDPFSVSSAFAAGRAQLELANRQALVYSLYAPKVKSIMDLN

A0A1J6JR59 Uncharacterized protein1.3e-2874.71Show/hide
Query:  MATPSSSEILSLFRSLLRTARQFPDYNIREYTKRRTVDAFRQNQSLSDPFSVSSAFAAGRAQLELANRQALVYSLYAPKVKSIMDLN
        MA+PS  E+L+LFRSLL+TARQFPDYNIREYTKRRT+DAF+QN+ LSDP  V++AF+ GR+QLE+A RQA+VYSLYAPKVKS+M+LN
Subjt:  MATPSSSEILSLFRSLLRTARQFPDYNIREYTKRRTVDAFRQNQSLSDPFSVSSAFAAGRAQLELANRQALVYSLYAPKVKSIMDLN

A0A1S3XFP4 LYR motif-containing protein 47.8e-2975.86Show/hide
Query:  MATPSSSEILSLFRSLLRTARQFPDYNIREYTKRRTVDAFRQNQSLSDPFSVSSAFAAGRAQLELANRQALVYSLYAPKVKSIMDLN
        MA+PS  E+L+LFRSLL+TARQFPDYNIREYTKRRT+D FRQN+ LSDP  V++AF+ GRAQLE+A RQA+VYSLYAPKVKS+M+LN
Subjt:  MATPSSSEILSLFRSLLRTARQFPDYNIREYTKRRTVDAFRQNQSLSDPFSVSSAFAAGRAQLELANRQALVYSLYAPKVKSIMDLN

A0A1U7V895 LYR motif-containing protein 41.7e-2874.71Show/hide
Query:  MATPSSSEILSLFRSLLRTARQFPDYNIREYTKRRTVDAFRQNQSLSDPFSVSSAFAAGRAQLELANRQALVYSLYAPKVKSIMDLN
        MA+PS  E+L+LFRSLL+TARQFPDYNIREYTKRRT+D FRQN+ LSDP  V++AF+ GR+QLE+A RQA+VYSLYAPKVKS+M+LN
Subjt:  MATPSSSEILSLFRSLLRTARQFPDYNIREYTKRRTVDAFRQNQSLSDPFSVSSAFAAGRAQLELANRQALVYSLYAPKVKSIMDLN

A0A6J1C8A4 LYR motif-containing protein 48.3e-3182.95Show/hide
Query:  MATPSSSEILSLFRSLLRTARQFPDYNIREYTKRRTVDAFRQNQSLSDPFSVSSAFAAGRAQLELANRQALVYSLYAPKVKSIMDLNL
        MATPS SEILSLFRSLLRTARQF DYNIREYTKRR +DAFR+N+SLSDP S+SSA+A G+AQLE+A RQALVYSLYAPKVKSIMD+ L
Subjt:  MATPSSSEILSLFRSLLRTARQFPDYNIREYTKRRTVDAFRQNQSLSDPFSVSSAFAAGRAQLELANRQALVYSLYAPKVKSIMDLNL

SwissProt top hitse value%identityAlignment
B5X5U9 LYR motif-containing protein 4A1.8e-0632.89Show/hide
Query:  MATPSSSEILSLFRSLLRTARQFPDYNIREYTKRRTVDAFRQNQSLSDPFSVSSAFAAGRAQLELANRQALVYSLY
        MA  S ++++SL+R L++ +++FP YN R Y  RR  D+FR+N  + +P ++       R  L +  RQ  +  +Y
Subjt:  MATPSSSEILSLFRSLLRTARQFPDYNIREYTKRRTVDAFRQNQSLSDPFSVSSAFAAGRAQLELANRQALVYSLY

B5XD90 LYR motif-containing protein 4B2.3e-0938.75Show/hide
Query:  SSEILSLFRSLLRTARQFPDYNIREYTKRRTVDAFRQNQSLSDPFSVSSAFAAGRAQLELANRQALVYSLYAPKVKSIMD
        ++++LSL+R L++ + +FP YN R Y  RR  DAFR N+S+ DP  V      GR  L++  RQ  +  +Y P  K+I++
Subjt:  SSEILSLFRSLLRTARQFPDYNIREYTKRRTVDAFRQNQSLSDPFSVSSAFAAGRAQLELANRQALVYSLYAPKVKSIMD

B8JLQ0 LYR motif-containing protein 41.4e-0633.77Show/hide
Query:  MATPSSSEILSLFRSLLRTARQFPDYNIREYTKRRTVDAFRQNQSLSDPFSVSSAFAAGRAQLELANRQALVYSLYA
        MA+ S ++++SL+R L++ +++FP YN R Y  RR  D FR+N  + +P ++       R  L +  RQ  +  LY+
Subjt:  MATPSSSEILSLFRSLLRTARQFPDYNIREYTKRRTVDAFRQNQSLSDPFSVSSAFAAGRAQLELANRQALVYSLYA

Q6DCS1 LYR motif-containing protein 45.2e-0632.47Show/hide
Query:  MATPSSSEILSLFRSLLRTARQFPDYNIREYTKRRTVDAFRQNQSLSDPFSVSSAFAAGRAQLELANRQALVYSLYA
        M+  S S++LSL++ +LR +++F  YN R Y  RR  DAFR+ +++ D   + +     +  L +  RQ  +  +YA
Subjt:  MATPSSSEILSLFRSLLRTARQFPDYNIREYTKRRTVDAFRQNQSLSDPFSVSSAFAAGRAQLELANRQALVYSLYA

Q9HD34 LYR motif-containing protein 47.3e-0836.36Show/hide
Query:  MATPSSSEILSLFRSLLRTARQFPDYNIREYTKRRTVDAFRQNQSLSDPFSVSSAFAAGRAQLELANRQALVYSLYA
        MA  S +++LSL+R++LR +++F  YN R Y  RR  DAFR+N+++ DP  + +     +  L +  RQ  +  LY+
Subjt:  MATPSSSEILSLFRSLLRTARQFPDYNIREYTKRRTVDAFRQNQSLSDPFSVSSAFAAGRAQLELANRQALVYSLYA

Arabidopsis top hitse value%identityAlignment
AT5G61220.1 LYR family of Fe/S cluster biogenesis protein5.9e-2158.33Show/hide
Query:  SSSEILSLFRSLLRTARQFPDYNIREYTKRRTVDAFRQNQSLSDPFSVSSAFAAGRAQLELANRQALVYSLYAPKVKSIMDLNL
        SSSE+LSL R+LLR  RQFPDYNIREY+KRRT+D FR N++L+DP  V+ A+A  + QL +A R   VY  Y PK K+IM++ L
Subjt:  SSSEILSLFRSLLRTARQFPDYNIREYTKRRTVDAFRQNQSLSDPFSVSSAFAAGRAQLELANRQALVYSLYAPKVKSIMDLNL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAACGCCGTCGAGCTCTGAAATCCTCTCTCTCTTCCGTTCGCTTCTTCGCACCGCCCGTCAATTCCCAGATTACAACATCCGAGAATACACCAAACGCCGCACCGT
TGACGCCTTCCGACAAAACCAGAGCCTCTCCGACCCTTTCTCGGTCTCCTCCGCCTTCGCCGCCGGCAGAGCTCAGCTCGAGCTTGCCAACCGCCAGGCTCTTGTTTACT
CTCTCTACGCGCCGAAGGTCAAGAGTATCATGGATCTCAATCTCTGA
mRNA sequenceShow/hide mRNA sequence
ATTCTCATGCTACCTCCTCCTTTAATATGTAGCCAGCAAAACCAGAATCATCATCGCCTGTTTTGATCCTTTTTTTCTTCCGCCGGAGATGGCAACGCCGTCGAGCTCTG
AAATCCTCTCTCTCTTCCGTTCGCTTCTTCGCACCGCCCGTCAATTCCCAGATTACAACATCCGAGAATACACCAAACGCCGCACCGTTGACGCCTTCCGACAAAACCAG
AGCCTCTCCGACCCTTTCTCGGTCTCCTCCGCCTTCGCCGCCGGCAGAGCTCAGCTCGAGCTTGCCAACCGCCAGGCTCTTGTTTACTCTCTCTACGCGCCGAAGGTCAA
GAGTATCATGGATCTCAATCTCTGAATCTTTCTAGGGTTCTATGAATTTGTCGTTCTTCATTCTTTTTTTTTTCTTTTTTTTTTGAGAATTGAGCTGTGAATTGGCAAGT
TTATTGCATCATAATCTTAAGTGTTCTTTATGAGCTTAATTCAGCAATCTTTGTTTAGGGAAATTATGGATTTTTTTAAACTAATTGATCGAGCATGAATCCTATTATTG
TGATGCTTTTGTGATTTTTCCTTTTTGGGTTTTCTTCATTGTTTGGTGCTTCTGAAAATCATTCAAT
Protein sequenceShow/hide protein sequence
MATPSSSEILSLFRSLLRTARQFPDYNIREYTKRRTVDAFRQNQSLSDPFSVSSAFAAGRAQLELANRQALVYSLYAPKVKSIMDLNL