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Sed0002222 (gene) of Chayote v1 genome

Gene IDSed0002222
OrganismSechium edule (Chayote v1)
DescriptionReverse transcriptase
Genome locationLG01:6564816..6565151
RNA-Seq ExpressionSed0002222
SyntenySed0002222
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0051481.1 reverse transcriptase [Cucumis melo var. makuwa]1.7e-2264.2Show/hide
Query:  MGALKFLSAFQNKMGQFGESFERGLMYVDAWVNQRSAKSTMVDSRAIHNFMIEAEARRLNLQWDRDSGKMKAINLAVLPIL
        MGALKFLS+ Q K+G+     ERGLMYVD W+NQ+S KSTMVDS A HNF+ E EA+RLNL+W++D+G+MKA+N A LPI+
Subjt:  MGALKFLSAFQNKMGQFGESFERGLMYVDAWVNQRSAKSTMVDSRAIHNFMIEAEARRLNLQWDRDSGKMKAINLAVLPIL

KAA0060480.1 reverse transcriptase [Cucumis melo var. makuwa]1.3e-2264.2Show/hide
Query:  MGALKFLSAFQNKMGQFGESFERGLMYVDAWVNQRSAKSTMVDSRAIHNFMIEAEARRLNLQWDRDSGKMKAINLAVLPIL
        MGALKFLS+ Q K+G+     ERGLMYVD W+N++  KSTMVDS A HNF+IEAEA+RLNL+W++D+G+MKA+N A LPI+
Subjt:  MGALKFLSAFQNKMGQFGESFERGLMYVDAWVNQRSAKSTMVDSRAIHNFMIEAEARRLNLQWDRDSGKMKAINLAVLPIL

KAA0060662.1 reverse transcriptase [Cucumis melo var. makuwa]1.3e-2259.34Show/hide
Query:  MGALKFLSAFQNKMGQFGESFERGLMYVDAWVNQRSAKSTMVDSRAIHNFMIEAEARRLNLQWDRDSGKMKAINLAVLPILIVELNTECSL
        MGALKFLS+ Q K+G+     ERGLMYVD W+NQ+  KSTMVDS A HNF+ E EA+RLNL+W++D+G+MKA+N A LPI+ +E  T  +L
Subjt:  MGALKFLSAFQNKMGQFGESFERGLMYVDAWVNQRSAKSTMVDSRAIHNFMIEAEARRLNLQWDRDSGKMKAINLAVLPILIVELNTECSL

KAA0066677.1 uncharacterized protein E6C27_scaffold271G00020 [Cucumis melo var. makuwa]3.7e-2264.2Show/hide
Query:  MGALKFLSAFQNKMGQFGESFERGLMYVDAWVNQRSAKSTMVDSRAIHNFMIEAEARRLNLQWDRDSGKMKAINLAVLPIL
        MGALKFLS+ Q K+G+   S ERGLMYVD W NQ+  KSTMVDS A HNF+ E EA+RLNL+W++D+G+MKA+N A LPI+
Subjt:  MGALKFLSAFQNKMGQFGESFERGLMYVDAWVNQRSAKSTMVDSRAIHNFMIEAEARRLNLQWDRDSGKMKAINLAVLPIL

XP_022155185.1 uncharacterized protein LOC111022320 [Momordica charantia]8.8e-2471.6Show/hide
Query:  MGALKFLSAFQNKMGQFGESFERGLMYVDAWVNQRSAKSTMVDSRAIHNFMIEAEARRLNLQWDRDSGKMKAINLAVLPIL
        MGALKFLSA Q K  +  E  ERGLMYV+AWVNQ++AKSTMVDS A HNFM E EARRLNL WD+D GKMKA+N A LPI+
Subjt:  MGALKFLSAFQNKMGQFGESFERGLMYVDAWVNQRSAKSTMVDSRAIHNFMIEAEARRLNLQWDRDSGKMKAINLAVLPIL

TrEMBL top hitse value%identityAlignment
A0A5A7UD54 Reverse transcriptase8.1e-2364.2Show/hide
Query:  MGALKFLSAFQNKMGQFGESFERGLMYVDAWVNQRSAKSTMVDSRAIHNFMIEAEARRLNLQWDRDSGKMKAINLAVLPIL
        MGALKFLS+ Q K+G+     ERGLMYVD W+NQ+S KSTMVDS A HNF+ E EA+RLNL+W++D+G+MKA+N A LPI+
Subjt:  MGALKFLSAFQNKMGQFGESFERGLMYVDAWVNQRSAKSTMVDSRAIHNFMIEAEARRLNLQWDRDSGKMKAINLAVLPIL

A0A5A7UXR6 Reverse transcriptase6.2e-2359.34Show/hide
Query:  MGALKFLSAFQNKMGQFGESFERGLMYVDAWVNQRSAKSTMVDSRAIHNFMIEAEARRLNLQWDRDSGKMKAINLAVLPILIVELNTECSL
        MGALKFLS+ Q K+G+     ERGLMYVD W+NQ+  KSTMVDS A HNF+ E EA+RLNL+W++D+G+MKA+N A LPI+ +E  T  +L
Subjt:  MGALKFLSAFQNKMGQFGESFERGLMYVDAWVNQRSAKSTMVDSRAIHNFMIEAEARRLNLQWDRDSGKMKAINLAVLPILIVELNTECSL

A0A5A7UZE9 Reverse transcriptase6.2e-2364.2Show/hide
Query:  MGALKFLSAFQNKMGQFGESFERGLMYVDAWVNQRSAKSTMVDSRAIHNFMIEAEARRLNLQWDRDSGKMKAINLAVLPIL
        MGALKFLS+ Q K+G+     ERGLMYVD W+N++  KSTMVDS A HNF+IEAEA+RLNL+W++D+G+MKA+N A LPI+
Subjt:  MGALKFLSAFQNKMGQFGESFERGLMYVDAWVNQRSAKSTMVDSRAIHNFMIEAEARRLNLQWDRDSGKMKAINLAVLPIL

A0A5D3DVV7 Retrotrans_gag domain-containing protein1.8e-2264.2Show/hide
Query:  MGALKFLSAFQNKMGQFGESFERGLMYVDAWVNQRSAKSTMVDSRAIHNFMIEAEARRLNLQWDRDSGKMKAINLAVLPIL
        MGALKFLS+ Q K+G+     ERGLMYVD W+NQ+  KSTMVDS A HNF+ EAEA+RLNL W++D+G+MKA+N A LPI+
Subjt:  MGALKFLSAFQNKMGQFGESFERGLMYVDAWVNQRSAKSTMVDSRAIHNFMIEAEARRLNLQWDRDSGKMKAINLAVLPIL

A0A6J1DLQ6 uncharacterized protein LOC1110223204.3e-2471.6Show/hide
Query:  MGALKFLSAFQNKMGQFGESFERGLMYVDAWVNQRSAKSTMVDSRAIHNFMIEAEARRLNLQWDRDSGKMKAINLAVLPIL
        MGALKFLSA Q K  +  E  ERGLMYV+AWVNQ++AKSTMVDS A HNFM E EARRLNL WD+D GKMKA+N A LPI+
Subjt:  MGALKFLSAFQNKMGQFGESFERGLMYVDAWVNQRSAKSTMVDSRAIHNFMIEAEARRLNLQWDRDSGKMKAINLAVLPIL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGAGCCCTAAAGTTCTTGTCAGCCTTCCAAAACAAAATGGGTCAATTCGGAGAGTCGTTCGAGCGTGGCCTTATGTACGTTGACGCTTGGGTCAACCAGAGATCGGC
CAAGAGTACCATGGTCGACTCTAGAGCCATTCATAACTTCATGATTGAAGCTGAGGCACGACGGCTGAACCTACAATGGGACCGAGATTCAGGAAAGATGAAAGCAATTA
ATTTGGCAGTGTTACCCATCCTAATAGTAGAACTAAACACAGAATGCTCCTTGAGCTGCAGATCACCACCCAAACTACCCTCACAAACAAACCATAAAGTTACAACCGAA
GCATAA
mRNA sequenceShow/hide mRNA sequence
ATGGGAGCCCTAAAGTTCTTGTCAGCCTTCCAAAACAAAATGGGTCAATTCGGAGAGTCGTTCGAGCGTGGCCTTATGTACGTTGACGCTTGGGTCAACCAGAGATCGGC
CAAGAGTACCATGGTCGACTCTAGAGCCATTCATAACTTCATGATTGAAGCTGAGGCACGACGGCTGAACCTACAATGGGACCGAGATTCAGGAAAGATGAAAGCAATTA
ATTTGGCAGTGTTACCCATCCTAATAGTAGAACTAAACACAGAATGCTCCTTGAGCTGCAGATCACCACCCAAACTACCCTCACAAACAAACCATAAAGTTACAACCGAA
GCATAA
Protein sequenceShow/hide protein sequence
MGALKFLSAFQNKMGQFGESFERGLMYVDAWVNQRSAKSTMVDSRAIHNFMIEAEARRLNLQWDRDSGKMKAINLAVLPILIVELNTECSLSCRSPPKLPSQTNHKVTTE
A