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Sed0002224 (gene) of Chayote v1 genome

Gene IDSed0002224
OrganismSechium edule (Chayote v1)
DescriptionRPM1-interacting protein 4-like
Genome locationLG01:11513967..11516262
RNA-Seq ExpressionSed0002224
SyntenySed0002224
Gene Ontology termsNA
InterPro domainsIPR008700 - RIN4, pathogenic type III effector avirulence factor Avr cleavage site
IPR040387 - RPM1-interacting protein 4/NOI4


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004152507.2 protein NOI4 [Cucumis sativus]4.5e-2780.52Show/hide
Query:  MASQDNKGRPLPKFGDWDVNNPASSEGFTVIFNKARNEKKTTGTAANIVQPQSKEPVYNNESFSQDHPTKKRWFCCG
        MASQD KGR LPKFGDWDVNNPAS+EGFTVIFNKARNEKKTTGTAAN+V  +  EPV+NNES+ Q  P KKRWFCCG
Subjt:  MASQDNKGRPLPKFGDWDVNNPASSEGFTVIFNKARNEKKTTGTAANIVQPQSKEPVYNNESFSQDHPTKKRWFCCG

XP_008439256.1 PREDICTED: RPM1-interacting protein 4 isoform X1 [Cucumis melo]1.3e-2677.92Show/hide
Query:  MASQDNKGRPLPKFGDWDVNNPASSEGFTVIFNKARNEKKTTGTAANIVQPQSKEPVYNNESFSQDHPTKKRWFCCG
        MASQD +GRPLPKFG+WDVNNPAS+EGFTVIFNKARNEKKTTG AAN+V  +  EPV+NNES+ Q  P KKRWFCCG
Subjt:  MASQDNKGRPLPKFGDWDVNNPASSEGFTVIFNKARNEKKTTGTAANIVQPQSKEPVYNNESFSQDHPTKKRWFCCG

XP_022137180.1 uncharacterized protein LOC111008714 isoform X2 [Momordica charantia]2.0e-2775.32Show/hide
Query:  MASQDNKGRPLPKFGDWDVNNPASSEGFTVIFNKARNEKKTTGTAANIVQPQSKEPVYNNESFSQDHPTKKRWFCCG
        M+S +++GRPLPKFG+WDVNNPAS+EGFTVIFNKAR+EKKTTGTAA+ V PQ  E +YNNE+F Q HP KKRWFCCG
Subjt:  MASQDNKGRPLPKFGDWDVNNPASSEGFTVIFNKARNEKKTTGTAANIVQPQSKEPVYNNESFSQDHPTKKRWFCCG

XP_022954832.1 RPM1-interacting protein 4-like [Cucurbita moschata]3.5e-2779.22Show/hide
Query:  MASQDNKGRPLPKFGDWDVNNPASSEGFTVIFNKARNEKKTTGTAANIVQPQSKEPVYNNESFSQDHPTKKRWFCCG
        MA QD KGRPLPKFG+WDVNNPAS+EGFTVIFNKAR+EKKTTG+ AN+V  QS EP YNNESF Q  P KKRWFCCG
Subjt:  MASQDNKGRPLPKFGDWDVNNPASSEGFTVIFNKARNEKKTTGTAANIVQPQSKEPVYNNESFSQDHPTKKRWFCCG

XP_038894676.1 protein NOI4 isoform X1 [Benincasa hispida]2.7e-2781.82Show/hide
Query:  MASQDNKGRPLPKFGDWDVNNPASSEGFTVIFNKARNEKKTTGTAANIVQPQSKEPVYNNESFSQDHPTKKRWFCCG
        MASQD KGRPLPKFG+WDVNNPAS+EGFTVIFNKARNEKKTTGTAAN V  Q  EPV+NNES+ Q  P KKRWFCCG
Subjt:  MASQDNKGRPLPKFGDWDVNNPASSEGFTVIFNKARNEKKTTGTAANIVQPQSKEPVYNNESFSQDHPTKKRWFCCG

TrEMBL top hitse value%identityAlignment
A0A0A0LRE5 AvrRpt-cleavage domain-containing protein2.2e-2780.52Show/hide
Query:  MASQDNKGRPLPKFGDWDVNNPASSEGFTVIFNKARNEKKTTGTAANIVQPQSKEPVYNNESFSQDHPTKKRWFCCG
        MASQD KGR LPKFGDWDVNNPAS+EGFTVIFNKARNEKKTTGTAAN+V  +  EPV+NNES+ Q  P KKRWFCCG
Subjt:  MASQDNKGRPLPKFGDWDVNNPASSEGFTVIFNKARNEKKTTGTAANIVQPQSKEPVYNNESFSQDHPTKKRWFCCG

A0A1S3AZ04 RPM1-interacting protein 4 isoform X16.4e-2777.92Show/hide
Query:  MASQDNKGRPLPKFGDWDVNNPASSEGFTVIFNKARNEKKTTGTAANIVQPQSKEPVYNNESFSQDHPTKKRWFCCG
        MASQD +GRPLPKFG+WDVNNPAS+EGFTVIFNKARNEKKTTG AAN+V  +  EPV+NNES+ Q  P KKRWFCCG
Subjt:  MASQDNKGRPLPKFGDWDVNNPASSEGFTVIFNKARNEKKTTGTAANIVQPQSKEPVYNNESFSQDHPTKKRWFCCG

A0A6J1C5Z3 uncharacterized protein LOC111008714 isoform X29.9e-2875.32Show/hide
Query:  MASQDNKGRPLPKFGDWDVNNPASSEGFTVIFNKARNEKKTTGTAANIVQPQSKEPVYNNESFSQDHPTKKRWFCCG
        M+S +++GRPLPKFG+WDVNNPAS+EGFTVIFNKAR+EKKTTGTAA+ V PQ  E +YNNE+F Q HP KKRWFCCG
Subjt:  MASQDNKGRPLPKFGDWDVNNPASSEGFTVIFNKARNEKKTTGTAANIVQPQSKEPVYNNESFSQDHPTKKRWFCCG

A0A6J1C6I4 uncharacterized protein LOC111008714 isoform X18.4e-2775.68Show/hide
Query:  QDNKGRPLPKFGDWDVNNPASSEGFTVIFNKARNEKKTTGTAANIVQPQSKEPVYNNESFSQDHPTKKRWFCCG
        + ++GRPLPKFG+WDVNNPAS+EGFTVIFNKAR+EKKTTGTAA+ V PQ  E +YNNE+F Q HP KKRWFCCG
Subjt:  QDNKGRPLPKFGDWDVNNPASSEGFTVIFNKARNEKKTTGTAANIVQPQSKEPVYNNESFSQDHPTKKRWFCCG

A0A6J1GRZ4 RPM1-interacting protein 4-like1.7e-2779.22Show/hide
Query:  MASQDNKGRPLPKFGDWDVNNPASSEGFTVIFNKARNEKKTTGTAANIVQPQSKEPVYNNESFSQDHPTKKRWFCCG
        MA QD KGRPLPKFG+WDVNNPAS+EGFTVIFNKAR+EKKTTG+ AN+V  QS EP YNNESF Q  P KKRWFCCG
Subjt:  MASQDNKGRPLPKFGDWDVNNPASSEGFTVIFNKARNEKKTTGTAANIVQPQSKEPVYNNESFSQDHPTKKRWFCCG

SwissProt top hitse value%identityAlignment
O22633 Protein NOI41.2e-1454.93Show/hide
Query:  NKGRPLPKFGDWDVNNPASSEGFTVIFNKARNEKKTTGTAANIVQPQSKEPVYNNESFSQDHPTKKRWFCC
        +KGRPLPKFG+WDVN+PAS+EGFTVIFNKAR+EKKT G   +    +S E    +       P  K+W CC
Subjt:  NKGRPLPKFGDWDVNNPASSEGFTVIFNKARNEKKTTGTAANIVQPQSKEPVYNNESFSQDHPTKKRWFCC

Q8GYN5 RPM1-interacting protein 46.0e-0642.42Show/hide
Query:  LPKFGDWDVNNPASSEGFTVIFNKARNEKKTTGTAANIVQPQSKEPVYNNESFSQDHPTKKRWFCC
        +PKFGDWD NNP+S++G+T IFNK R E+    + AN V   S+ P +     S  +P      CC
Subjt:  LPKFGDWDVNNPASSEGFTVIFNKARNEKKTTGTAANIVQPQSKEPVYNNESFSQDHPTKKRWFCC

Arabidopsis top hitse value%identityAlignment
AT2G04410.1 RPM1-interacting protein 4 (RIN4) family protein7.0e-1860.56Show/hide
Query:  NKGRPLPKFGDWDVNNPASSEGFTVIFNKARNEKKTTGTAANIVQPQSKEPVYNNESFSQDHPTKKRWFCC
        +KGRPLPKFG+WDVN+P+S+EGFTVIFNKARNEKK  G + +   P   EP YN      + P KK WFCC
Subjt:  NKGRPLPKFGDWDVNNPASSEGFTVIFNKARNEKKTTGTAANIVQPQSKEPVYNNESFSQDHPTKKRWFCC

AT3G48450.1 RPM1-interacting protein 4 (RIN4) family protein6.6e-1648.19Show/hide
Query:  NKGRPLPKFGDWDVNNPASSEGFTVIFNKARNEKKTTGTA-----ANIVQPQSKEPVYNNESFSQDHPT--------KKRWFC
        N+ RPLPKFG+WD  NP S+EGFTVIFNKAR++KKT  TA     + +  P+++EP  NN +   +H T        KK+W C
Subjt:  NKGRPLPKFGDWDVNNPASSEGFTVIFNKARNEKKTTGTA-----ANIVQPQSKEPVYNNESFSQDHPT--------KKRWFC

AT5G40645.1 RPM1-interacting protein 4 (RIN4) family protein1.6e-1456.16Show/hide
Query:  QDNKGRPLPKFGDWDVNNPASSEGFTVIFNKARNEKKTTGTAANIVQPQSKEPVYNNESFSQDHPTKKRWFCC
        +  + RPLPKFG+WDVN+PAS+EGFTVIF KAR++KKT  +     Q +      NN+  SQD PTKKR FCC
Subjt:  QDNKGRPLPKFGDWDVNNPASSEGFTVIFNKARNEKKTTGTAANIVQPQSKEPVYNNESFSQDHPTKKRWFCC

AT5G55850.3 RPM1-interacting protein 4 (RIN4) family protein8.6e-1654.93Show/hide
Query:  NKGRPLPKFGDWDVNNPASSEGFTVIFNKARNEKKTTGTAANIVQPQSKEPVYNNESFSQDHPTKKRWFCC
        +KGRPLPKFG+WDVN+PAS+EGFTVIFNKAR+EKKT G   +    +S E    +       P  K+W CC
Subjt:  NKGRPLPKFGDWDVNNPASSEGFTVIFNKARNEKKTTGTAANIVQPQSKEPVYNNESFSQDHPTKKRWFCC

AT5G63270.1 RPM1-interacting protein 4 (RIN4) family protein5.9e-1756.58Show/hide
Query:  DNKGRPLPKFGDWDVNNPASSEGFTVIFNKARNEKKT---TGTAAN-IVQPQ-SKEPVYNNESFSQDHPTKKRWFC
        +NKG+PLPKFG+WDVNNPAS+EGFTVIF+KA +EKKT   +G   N +V PQ ++    NN   SQ+   K +WFC
Subjt:  DNKGRPLPKFGDWDVNNPASSEGFTVIFNKARNEKKT---TGTAAN-IVQPQ-SKEPVYNNESFSQDHPTKKRWFC


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGTCGCAGGACAACAAGGGTCGCCCACTGCCAAAGTTTGGTGATTGGGATGTAAATAATCCTGCATCTTCAGAAGGATTTACAGTGATATTTAACAAGGCCAGAAA
TGAGAAGAAGACAACTGGAACTGCTGCCAATATAGTTCAACCACAAAGTAAAGAACCTGTCTATAACAATGAAAGCTTCTCTCAGGATCATCCAACGAAGAAGAGGTGGT
TTTGCTGTGGTTGA
mRNA sequenceShow/hide mRNA sequence
CATTCTCACAATTATATATTTTTTGCATTCTCCGTTTCTGGTCTCTTCGTATCCGATCCCCAGCCCTGCGTCCTGCATTCATGGCGTCGCAGGACAACAAGGGTCGCCCA
CTGCCAAAGTTTGGTGATTGGGATGTAAATAATCCTGCATCTTCAGAAGGATTTACAGTGATATTTAACAAGGCCAGAAATGAGAAGAAGACAACTGGAACTGCTGCCAA
TATAGTTCAACCACAAAGTAAAGAACCTGTCTATAACAATGAAAGCTTCTCTCAGGATCATCCAACGAAGAAGAGGTGGTTTTGCTGTGGTTGAAGACACAGTGGTTTCA
AGATTTTGAGTTTGTGTAATCTGTTGTGAAAGCCCATAAATTGTGAGAGCCATATCCAACCTCGAACCGCTGGTTCCCAGCAAAGTTGTCGCTCCAACAATGGCTCGATA
TTATTTCTCTTCACTTTTCACATTGGCTTTCATGATTTATTAACGTTATATAATTAACTTATATCACATGTTATTCTGTTTTAGTACAGGATGGAAAAGATAAATTACGA
CGATAACCAAAATC
Protein sequenceShow/hide protein sequence
MASQDNKGRPLPKFGDWDVNNPASSEGFTVIFNKARNEKKTTGTAANIVQPQSKEPVYNNESFSQDHPTKKRWFCCG