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Sed0002225 (gene) of Chayote v1 genome

Gene IDSed0002225
OrganismSechium edule (Chayote v1)
Descriptionzinc_ribbon_15 domain-containing protein
Genome locationLG03:4742779..4743317
RNA-Seq ExpressionSed0002225
SyntenySed0002225
Gene Ontology termsNA
InterPro domainsIPR031493 - Zinc-ribbon 15


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6578964.1 hypothetical protein SDJN03_23412, partial [Cucurbita argyrosperma subsp. sororia]2.3e-4373.68Show/hide
Query:  FFFVGNLGQQVRHILKSGAGRCITCNSPADLVEYEKVLKLYFVPVWRWPGKQPLMHCNNCDYFFPQS-SPPPVADQFPPPSSSAAALLRPLRCHSCHKGV
        FFFVG L QQVR +LKSGAGRC+ CNSPADLV YEKVLKL+FVPVWRWPGK+PLMHCNNC+ FFPQS SPPP++DQ  PP    A L R LRC SC+K V
Subjt:  FFFVGNLGQQVRHILKSGAGRCITCNSPADLVEYEKVLKLYFVPVWRWPGKQPLMHCNNCDYFFPQS-SPPPVADQFPPPSSSAAALLRPLRCHSCHKGV

Query:  EPGFRYCPFCGYSL
        EP F +CPFCG SL
Subjt:  EPGFRYCPFCGYSL

KAG6602097.1 hypothetical protein SDJN03_07330, partial [Cucurbita argyrosperma subsp. sororia]4.6e-4473.68Show/hide
Query:  FFFVGNLGQQVRHILKSGAGRCITCNSPADLVEYEKVLKLYFVPVWRWPGKQPLMHCNNCDYFFPQS-SPPPVADQFPPPSSSAAALLRPLRCHSCHKGV
        FF VG L QQVRH+LK+GAGRCI+CNSPADLV+YEKVLKL+FVPVWRWPGK+PLMHCNNC  FFP+S SP P++DQ PP    + ALLR LRCHSC+K V
Subjt:  FFFVGNLGQQVRHILKSGAGRCITCNSPADLVEYEKVLKLYFVPVWRWPGKQPLMHCNNCDYFFPQS-SPPPVADQFPPPSSSAAALLRPLRCHSCHKGV

Query:  EPGFRYCPFCGYSL
        EP F +CPFCG SL
Subjt:  EPGFRYCPFCGYSL

KAG7016486.1 hypothetical protein SDJN02_21595, partial [Cucurbita argyrosperma subsp. argyrosperma]1.8e-4374.56Show/hide
Query:  FFFVGNLGQQVRHILKSGAGRCITCNSPADLVEYEKVLKLYFVPVWRWPGKQPLMHCNNCDYFFPQS-SPPPVADQFPPPSSSAAALLRPLRCHSCHKGV
        FFFVG L QQVR +LKSGAGRCI CNSPADLV YEKVLKL+FVPVWRWPGK+PLMHCNNC+ FFPQS SPPP++DQ  PP    A L R LRC SC+K V
Subjt:  FFFVGNLGQQVRHILKSGAGRCITCNSPADLVEYEKVLKLYFVPVWRWPGKQPLMHCNNCDYFFPQS-SPPPVADQFPPPSSSAAALLRPLRCHSCHKGV

Query:  EPGFRYCPFCGYSL
        EP F +CPFCG SL
Subjt:  EPGFRYCPFCGYSL

XP_022962458.1 uncharacterized protein LOC111462885 [Cucurbita moschata]2.9e-4676.32Show/hide
Query:  FFFVGNLGQQVRHILKSGAGRCITCNSPADLVEYEKVLKLYFVPVWRWPGKQPLMHCNNCDYFFPQS-SPPPVADQFPPPSSSAAALLRPLRCHSCHKGV
        FFFVG L QQVRH+LK+GAGRCI+CNSPADLV+YEKVLKL+FVPVWRWPGK+PLMHCNNC  FFP+S SPPP++DQ PP    +AALLR LRCHSC+K V
Subjt:  FFFVGNLGQQVRHILKSGAGRCITCNSPADLVEYEKVLKLYFVPVWRWPGKQPLMHCNNCDYFFPQS-SPPPVADQFPPPSSSAAALLRPLRCHSCHKGV

Query:  EPGFRYCPFCGYSL
        EP F +CPFCG SL
Subjt:  EPGFRYCPFCGYSL

XP_023541925.1 uncharacterized protein LOC111801919 [Cucurbita pepo subsp. pepo]6.5e-4675.44Show/hide
Query:  FFFVGNLGQQVRHILKSGAGRCITCNSPADLVEYEKVLKLYFVPVWRWPGKQPLMHCNNCDYFFPQS-SPPPVADQFPPPSSSAAALLRPLRCHSCHKGV
        FFFVG L QQVRH+LK+GAGRCI+CNSPADLV+YEKVLKL+FVPVWRWPGK+PLMHCNNC  FFP+S SPPP++DQ PP    +AALLR LRCHSC+K V
Subjt:  FFFVGNLGQQVRHILKSGAGRCITCNSPADLVEYEKVLKLYFVPVWRWPGKQPLMHCNNCDYFFPQS-SPPPVADQFPPPSSSAAALLRPLRCHSCHKGV

Query:  EPGFRYCPFCGYSL
        EP F +CPFCG S+
Subjt:  EPGFRYCPFCGYSL

TrEMBL top hitse value%identityAlignment
A0A0A0KDD6 zinc_ribbon_15 domain-containing protein1.4e-4171.93Show/hide
Query:  FFFVGNLGQQVRHILKSGAGRCITCNSPADLVEYEKVLKLYFVPVWRWPGKQPLMHCNNCDYFFPQS-SPPPVADQFPPPSSSAAALLRPLRCHSCHKGV
        FFFVG L QQVR +LKSGA RCI CNSPADLV+YEKVLKL+FVPVWRWPGK+PLMHCNNC  FFPQS SPP  +DQ     S++A LLR LRC SC+K V
Subjt:  FFFVGNLGQQVRHILKSGAGRCITCNSPADLVEYEKVLKLYFVPVWRWPGKQPLMHCNNCDYFFPQS-SPPPVADQFPPPSSSAAALLRPLRCHSCHKGV

Query:  EPGFRYCPFCGYSL
        EP F +CP+CG SL
Subjt:  EPGFRYCPFCGYSL

A0A6J1CIA7 uncharacterized protein LOC1110118762.1e-4271.93Show/hide
Query:  FFFVGNLGQQVRHILKSGAGRCITCNSPADLVEYEKVLKLYFVPVWRWPGKQPLMHCNNCDYFFPQS-SPPPVADQFPPPSSSAAALLRPLRCHSCHKGV
        FFF G L QQVR +LKSGAGRCI CNSPADLV+YEKVLKL+F PVWRWPGK+PLMHCNNC  FFPQS SPPP++DQ PP   + AAL + LRC SC++ V
Subjt:  FFFVGNLGQQVRHILKSGAGRCITCNSPADLVEYEKVLKLYFVPVWRWPGKQPLMHCNNCDYFFPQS-SPPPVADQFPPPSSSAAALLRPLRCHSCHKGV

Query:  EPGFRYCPFCGYSL
        EP F +CPFCG SL
Subjt:  EPGFRYCPFCGYSL

A0A6J1FFV9 uncharacterized protein LOC1114451044.7e-4272.81Show/hide
Query:  FFFVGNLGQQVRHILKSGAGRCITCNSPADLVEYEKVLKLYFVPVWRWPGKQPLMHCNNCDYFFPQS-SPPPVADQFPPPSSSAAALLRPLRCHSCHKGV
        FFFVG L QQVR +LKS AGRCI CNSPADLV YEKVLKL+FVPVWRWPGK+PLMHCNNC+ FFP S SPPP++DQ  PP    AA  R LRC SC+K V
Subjt:  FFFVGNLGQQVRHILKSGAGRCITCNSPADLVEYEKVLKLYFVPVWRWPGKQPLMHCNNCDYFFPQS-SPPPVADQFPPPSSSAAALLRPLRCHSCHKGV

Query:  EPGFRYCPFCGYSL
        EP F +CPFCG SL
Subjt:  EPGFRYCPFCGYSL

A0A6J1HEV4 uncharacterized protein LOC1114628851.4e-4676.32Show/hide
Query:  FFFVGNLGQQVRHILKSGAGRCITCNSPADLVEYEKVLKLYFVPVWRWPGKQPLMHCNNCDYFFPQS-SPPPVADQFPPPSSSAAALLRPLRCHSCHKGV
        FFFVG L QQVRH+LK+GAGRCI+CNSPADLV+YEKVLKL+FVPVWRWPGK+PLMHCNNC  FFP+S SPPP++DQ PP    +AALLR LRCHSC+K V
Subjt:  FFFVGNLGQQVRHILKSGAGRCITCNSPADLVEYEKVLKLYFVPVWRWPGKQPLMHCNNCDYFFPQS-SPPPVADQFPPPSSSAAALLRPLRCHSCHKGV

Query:  EPGFRYCPFCGYSL
        EP F +CPFCG SL
Subjt:  EPGFRYCPFCGYSL

A0A6J1JRI4 uncharacterized protein LOC1114891571.5e-4373.68Show/hide
Query:  FFFVGNLGQQVRHILKSGAGRCITCNSPADLVEYEKVLKLYFVPVWRWPGKQPLMHCNNCDYFFPQS-SPPPVADQFPPPSSSAAALLRPLRCHSCHKGV
        FFFVG L QQVR +LKS AGRCI CNSPADLV YEKVLKL+FVPVWRWPGK+PLMHCNNC+ FFP+S SPPP++DQ  PP    AAL R LRC SC+K V
Subjt:  FFFVGNLGQQVRHILKSGAGRCITCNSPADLVEYEKVLKLYFVPVWRWPGKQPLMHCNNCDYFFPQS-SPPPVADQFPPPSSSAAALLRPLRCHSCHKGV

Query:  EPGFRYCPFCGYSL
        EP F +CPFCG+SL
Subjt:  EPGFRYCPFCGYSL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G44414.1 unknown protein1.2e-3762.28Show/hide
Query:  FFFVGNLGQQVRHILKSGAGRCITCNSPADLVEYEKVLKLYFVPVWRWPGKQPLMHCNNCDYFFPQS-SPPPVADQFPPPSSSAAALLRPLRCHSCHKGV
        FFFVG LGQQVR +LKSGAG CI C S ADLVEY+KV+KL+FVPVWRWPGK PL+HC +CD FFPQS SPPPV+                  C  C + V
Subjt:  FFFVGNLGQQVRHILKSGAGRCITCNSPADLVEYEKVLKLYFVPVWRWPGKQPLMHCNNCDYFFPQS-SPPPVADQFPPPSSSAAALLRPLRCHSCHKGV

Query:  EPGFRYCPFCGYSL
        EP FR+CPFCG SL
Subjt:  EPGFRYCPFCGYSL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTCTTCTTCGTCGGAAACTTAGGGCAACAAGTTCGCCATATCCTGAAATCCGGCGCCGGCCGATGCATAACCTGCAACTCGCCGGCCGATCTCGTAGAATACGAGAA
AGTTCTGAAGCTCTACTTTGTTCCGGTGTGGCGGTGGCCGGGAAAACAGCCATTGATGCACTGCAACAACTGTGACTACTTTTTCCCCCAGTCCTCACCGCCGCCTGTTG
CTGATCAATTTCCGCCGCCGTCGTCGTCGGCGGCGGCTCTTTTGAGGCCCCTTCGTTGCCATTCCTGTCACAAAGGAGTGGAGCCCGGTTTCAGATACTGCCCTTTCTGC
GGTTATTCTCTGTGA
mRNA sequenceShow/hide mRNA sequence
CTCATTTATATAAACCGATTATAATAAACCGAAACATCGAGAGTCTCCTTCAACCAACCGATCGAACCGCATCTGCCCTCCAAATAAACAGAGCGATTCGCCTAACAAAT
TCGAAAAATGTTCTTCTTCGTCGGAAACTTAGGGCAACAAGTTCGCCATATCCTGAAATCCGGCGCCGGCCGATGCATAACCTGCAACTCGCCGGCCGATCTCGTAGAAT
ACGAGAAAGTTCTGAAGCTCTACTTTGTTCCGGTGTGGCGGTGGCCGGGAAAACAGCCATTGATGCACTGCAACAACTGTGACTACTTTTTCCCCCAGTCCTCACCGCCG
CCTGTTGCTGATCAATTTCCGCCGCCGTCGTCGTCGGCGGCGGCTCTTTTGAGGCCCCTTCGTTGCCATTCCTGTCACAAAGGAGTGGAGCCCGGTTTCAGATACTGCCC
TTTCTGCGGTTATTCTCTGTGAATTTTACCAGTTTTATGAGTTCGAAAATCTCAATAGTAAATAGTGGTAGTTAGAGAAAACTGGATATACTTTTTCCC
Protein sequenceShow/hide protein sequence
MFFFVGNLGQQVRHILKSGAGRCITCNSPADLVEYEKVLKLYFVPVWRWPGKQPLMHCNNCDYFFPQSSPPPVADQFPPPSSSAAALLRPLRCHSCHKGVEPGFRYCPFC
GYSL