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Sed0002314 (gene) of Chayote v1 genome

Gene IDSed0002314
OrganismSechium edule (Chayote v1)
Descriptionmediator of RNA polymerase II transcription subunit 15a
Genome locationLG10:35169724..35174249
RNA-Seq ExpressionSed0002314
SyntenySed0002314
Gene Ontology termsGO:0045893 - positive regulation of transcription, DNA-templated (biological process)
GO:0005634 - nucleus (cellular component)
GO:0003713 - transcription coactivator activity (molecular function)
GO:0031490 - chromatin DNA binding (molecular function)
InterPro domainsIPR036529 - Coactivator CBP, KIX domain superfamily
IPR036546 - Mediator complex subunit 15, KIX domain
IPR044661 - Mediator of RNA polymerase II transcription subunit 15a/b/c-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6571702.1 Mediator of RNA polymerase II transcription subunit 15a, partial [Cucurbita argyrosperma subsp. sororia]8.4e-3878.18Show/hide
Query:  MDMSDWRLTQGGEPGVESGDWRSQLQPDLRQQTVNKIMETLKSHLPVSGHEGLSELKKIAERFEEKLYTAATSQSDYLRKISLKMLTMEIKN-PHVENSL
        MD ++WR TQGGEPG+E+GDWRSQLQPD RQ+ VNKIMETLK HLPVSGHEGLSELKKIA RFEEK+YTAATSQSDYLRKISLKMLTME K+   +  SL
Subjt:  MDMSDWRLTQGGEPGVESGDWRSQLQPDLRQQTVNKIMETLKSHLPVSGHEGLSELKKIAERFEEKLYTAATSQSDYLRKISLKMLTMEIKN-PHVENSL

Query:  TSNSMVPNSK
         SN MVP++K
Subjt:  TSNSMVPNSK

XP_022963528.1 mediator of RNA polymerase II transcription subunit 15a-like isoform X1 [Cucurbita moschata]8.4e-3878.18Show/hide
Query:  MDMSDWRLTQGGEPGVESGDWRSQLQPDLRQQTVNKIMETLKSHLPVSGHEGLSELKKIAERFEEKLYTAATSQSDYLRKISLKMLTMEIKN-PHVENSL
        MD ++WR TQGGEPG+E+GDWRSQLQPD RQ+ VNKIMETLK HLPVSGHEGLSELKKIA RFEEK+YTAATSQSDYLRKISLKMLTME K+   +  SL
Subjt:  MDMSDWRLTQGGEPGVESGDWRSQLQPDLRQQTVNKIMETLKSHLPVSGHEGLSELKKIAERFEEKLYTAATSQSDYLRKISLKMLTMEIKN-PHVENSL

Query:  TSNSMVPNSK
         SN MVP++K
Subjt:  TSNSMVPNSK

XP_023553730.1 mediator of RNA polymerase II transcription subunit 15a-like [Cucurbita pepo subsp. pepo]8.4e-3878.18Show/hide
Query:  MDMSDWRLTQGGEPGVESGDWRSQLQPDLRQQTVNKIMETLKSHLPVSGHEGLSELKKIAERFEEKLYTAATSQSDYLRKISLKMLTMEIKN-PHVENSL
        MD ++WR TQGGEPG+E+GDWRSQLQPD RQ+ VNKIMETLK HLPVSGHEGLSELKKIA RFEEK+YTAATSQSDYLRKISLKMLTME K+   +  SL
Subjt:  MDMSDWRLTQGGEPGVESGDWRSQLQPDLRQQTVNKIMETLKSHLPVSGHEGLSELKKIAERFEEKLYTAATSQSDYLRKISLKMLTMEIKN-PHVENSL

Query:  TSNSMVPNSK
         SN MVP++K
Subjt:  TSNSMVPNSK

XP_038887614.1 mediator of RNA polymerase II transcription subunit 15a-like [Benincasa hispida]8.4e-3877.27Show/hide
Query:  MDMSDWRLTQGGEPGVESGDWRSQLQPDLRQQTVNKIMETLKSHLPVSGHEGLSELKKIAERFEEKLYTAATSQSDYLRKISLKMLTMEIKN-PHVENSL
        MD ++WR TQG EPG+E+GDWRSQLQPD RQ+ VNKIMETLK HLPVSG EGLSEL+KIA RFEEK+YTAATSQSDYLRKISLKMLTME K+ PH+  SL
Subjt:  MDMSDWRLTQGGEPGVESGDWRSQLQPDLRQQTVNKIMETLKSHLPVSGHEGLSELKKIAERFEEKLYTAATSQSDYLRKISLKMLTMEIKN-PHVENSL

Query:  TSNSMVPNSK
         SN MVP++K
Subjt:  TSNSMVPNSK

XP_038887807.1 mediator of RNA polymerase II transcription subunit 15a-like [Benincasa hispida]6.4e-3877.27Show/hide
Query:  MDMSDWRLTQGGEPGVESGDWRSQLQPDLRQQTVNKIMETLKSHLPVSGHEGLSELKKIAERFEEKLYTAATSQSDYLRKISLKMLTMEIKN-PHVENSL
        MD ++WR TQG EPG+E+GDWRSQLQPD RQ+ VNKIMETLK HLPVSG EGLSEL+KIA RFEEK+YTAATSQSDYLRKISLKMLTME K+ PH+  SL
Subjt:  MDMSDWRLTQGGEPGVESGDWRSQLQPDLRQQTVNKIMETLKSHLPVSGHEGLSELKKIAERFEEKLYTAATSQSDYLRKISLKMLTMEIKN-PHVENSL

Query:  TSNSMVPNSK
         SN MVP++K
Subjt:  TSNSMVPNSK

TrEMBL top hitse value%identityAlignment
A0A1S3C0H1 mediator of RNA polymerase II transcription subunit 15a1.7e-3675.45Show/hide
Query:  MDMSDWRLTQGGEPGVESGDWRSQLQPDLRQQTVNKIMETLKSHLPVSGHEGLSELKKIAERFEEKLYTAATSQSDYLRKISLKMLTMEIK-NPHVENSL
        MD ++WR TQGGEPG+E+GDWRSQLQPD R + VNKIMETLK HLPVSG EGLSEL+KIA RFEEK++TAATSQSDYLRKISLKMLTME K  P + N L
Subjt:  MDMSDWRLTQGGEPGVESGDWRSQLQPDLRQQTVNKIMETLKSHLPVSGHEGLSELKKIAERFEEKLYTAATSQSDYLRKISLKMLTMEIK-NPHVENSL

Query:  TSNSMVPNSK
         SN MVP++K
Subjt:  TSNSMVPNSK

A0A5D3C6P8 Mediator of RNA polymerase II transcription subunit 15a1.7e-3675.45Show/hide
Query:  MDMSDWRLTQGGEPGVESGDWRSQLQPDLRQQTVNKIMETLKSHLPVSGHEGLSELKKIAERFEEKLYTAATSQSDYLRKISLKMLTMEIK-NPHVENSL
        MD ++WR TQGGEPG+E+GDWRSQLQPD R + VNKIMETLK HLPVSG EGLSEL+KIA RFEEK++TAATSQSDYLRKISLKMLTME K  P + N L
Subjt:  MDMSDWRLTQGGEPGVESGDWRSQLQPDLRQQTVNKIMETLKSHLPVSGHEGLSELKKIAERFEEKLYTAATSQSDYLRKISLKMLTMEIK-NPHVENSL

Query:  TSNSMVPNSK
         SN MVP++K
Subjt:  TSNSMVPNSK

A0A6J1EI34 mediator of RNA polymerase II transcription subunit 15a-like isoform X15.0e-3676.15Show/hide
Query:  MDMSDWRLTQGGEPGVESGDWRSQLQPDLRQQTVNKIMETLKSHLPVSGHEGLSELKKIAERFEEKLYTAATSQSDYLRKISLKMLTMEIKNPHVENSLT
        MD S+WR  QGGE GV++GDWRSQLQPD R + VNKIMETLK HLPVSGHEGLSEL+KIA RFEEK+YTAATSQSDYLRKISLKMLTME K+     +L 
Subjt:  MDMSDWRLTQGGEPGVESGDWRSQLQPDLRQQTVNKIMETLKSHLPVSGHEGLSELKKIAERFEEKLYTAATSQSDYLRKISLKMLTMEIKNPHVENSLT

Query:  SNSMVPNSK
        SNSMVP +K
Subjt:  SNSMVPNSK

A0A6J1HI15 mediator of RNA polymerase II transcription subunit 15a-like isoform X14.1e-3878.18Show/hide
Query:  MDMSDWRLTQGGEPGVESGDWRSQLQPDLRQQTVNKIMETLKSHLPVSGHEGLSELKKIAERFEEKLYTAATSQSDYLRKISLKMLTMEIKN-PHVENSL
        MD ++WR TQGGEPG+E+GDWRSQLQPD RQ+ VNKIMETLK HLPVSGHEGLSELKKIA RFEEK+YTAATSQSDYLRKISLKMLTME K+   +  SL
Subjt:  MDMSDWRLTQGGEPGVESGDWRSQLQPDLRQQTVNKIMETLKSHLPVSGHEGLSELKKIAERFEEKLYTAATSQSDYLRKISLKMLTMEIKN-PHVENSL

Query:  TSNSMVPNSK
         SN MVP++K
Subjt:  TSNSMVPNSK

A0A6J1HR60 mediator of RNA polymerase II transcription subunit 15a-like isoform X15.3e-3878.18Show/hide
Query:  MDMSDWRLTQGGEPGVESGDWRSQLQPDLRQQTVNKIMETLKSHLPVSGHEGLSELKKIAERFEEKLYTAATSQSDYLRKISLKMLTMEIKN-PHVENSL
        MD ++WR TQGGEPG+E GDWRSQLQPD RQ+ VNKIMETLK HLPVSGHEGLSELKKIA RFEEK+YTAATSQSDYLRKISLKMLTME K+   +  SL
Subjt:  MDMSDWRLTQGGEPGVESGDWRSQLQPDLRQQTVNKIMETLKSHLPVSGHEGLSELKKIAERFEEKLYTAATSQSDYLRKISLKMLTMEIKN-PHVENSL

Query:  TSNSMVPNSK
         SN MVP++K
Subjt:  TSNSMVPNSK

SwissProt top hitse value%identityAlignment
F4I171 Mediator of RNA polymerase II transcription subunit 15a1.8e-2757.01Show/hide
Query:  MDMSDWRLT-QGGEPGVESGDWRSQLQPDLRQQTVNKIMETLKSHLPVSGHEGLSELKKIAERFEEKLYTAATSQSDYLRKISLKMLTMEIKNPHVENSL
        MD ++WR +   GEP +++GDWR+QL PD RQ+ VNKIMETLK HLP SG EG++EL++IA RFEEK+++ A +Q+DYLRKIS+KMLTME K+   +N+ 
Subjt:  MDMSDWRLT-QGGEPGVESGDWRSQLQPDLRQQTVNKIMETLKSHLPVSGHEGLSELKKIAERFEEKLYTAATSQSDYLRKISLKMLTMEIKNPHVENSL

Query:  TSNSMVP
         S++ +P
Subjt:  TSNSMVP

Arabidopsis top hitse value%identityAlignment
AT1G15780.1 unknown protein1.3e-2857.01Show/hide
Query:  MDMSDWRLT-QGGEPGVESGDWRSQLQPDLRQQTVNKIMETLKSHLPVSGHEGLSELKKIAERFEEKLYTAATSQSDYLRKISLKMLTMEIKNPHVENSL
        MD ++WR +   GEP +++GDWR+QL PD RQ+ VNKIMETLK HLP SG EG++EL++IA RFEEK+++ A +Q+DYLRKIS+KMLTME K+   +N+ 
Subjt:  MDMSDWRLT-QGGEPGVESGDWRSQLQPDLRQQTVNKIMETLKSHLPVSGHEGLSELKKIAERFEEKLYTAATSQSDYLRKISLKMLTMEIKNPHVENSL

Query:  TSNSMVP
         S++ +P
Subjt:  TSNSMVP

AT1G15790.1 unknown protein5.6e-1647.19Show/hide
Query:  SGDWRSQLQPDLRQQTVNKIMETLKSHLPVSGHEGLSELKKIAERFEEKLYTAATSQSDYLRKISLKMLTMEIKNPHVENSLTSNSMVP
        +GDWR+Q     R + VNKIMET    LP    EG +EL+KIA RFEEKL+  A++Q++YLR+I +KML ME K+ +   S +++   P
Subjt:  SGDWRSQLQPDLRQQTVNKIMETLKSHLPVSGHEGLSELKKIAERFEEKLYTAATSQSDYLRKISLKMLTMEIKNPHVENSLTSNSMVP

AT1G15790.2 unknown protein5.6e-1647.19Show/hide
Query:  SGDWRSQLQPDLRQQTVNKIMETLKSHLPVSGHEGLSELKKIAERFEEKLYTAATSQSDYLRKISLKMLTMEIKNPHVENSLTSNSMVP
        +GDWR+Q     R + VNKIMET    LP    EG +EL+KIA RFEEKL+  A++Q++YLR+I +KML ME K+ +   S +++   P
Subjt:  SGDWRSQLQPDLRQQTVNKIMETLKSHLPVSGHEGLSELKKIAERFEEKLYTAATSQSDYLRKISLKMLTMEIKNPHVENSLTSNSMVP

AT2G10440.1 unknown protein1.0e-0438.24Show/hide
Query:  QGGEPGVESG--DWRSQLQPDLRQQTVNKIMETLKSHLPVSGHEGLSELKKIAERFEEKLYTAATSQS
        QGG     +   DWRSQ +P+LRQ+ ++KI+E  K       HE   ++  IA +FEE  Y+ AT ++
Subjt:  QGGEPGVESG--DWRSQLQPDLRQQTVNKIMETLKSHLPVSGHEGLSELKKIAERFEEKLYTAATSQS

AT2G10440.2 unknown protein1.3e-0739.02Show/hide
Query:  QGGEPGVESG--DWRSQLQPDLRQQTVNKIMETLKSHLPVS-------GHEGLSELKKIAERFEEKLYTAATSQSDYLRKIS
        QGG     +   DWRSQ +P+LRQ+ ++KI+ +L  +  V         HE   ++  IA +FEE  Y+ AT ++DYLRK+S
Subjt:  QGGEPGVESG--DWRSQLQPDLRQQTVNKIMETLKSHLPVS-------GHEGLSELKKIAERFEEKLYTAATSQSDYLRKIS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATATGAGCGATTGGAGACTCACTCAAGGTGGAGAACCTGGAGTTGAATCCGGCGATTGGAGGTCTCAATTGCAGCCCGATCTTCGACAACAAACTGTTAACAAGAT
AATGGAGACATTGAAGAGTCACCTTCCTGTTTCTGGTCACGAGGGATTGAGTGAGCTGAAAAAGATTGCCGAAAGGTTTGAAGAGAAGTTGTACACTGCCGCTACCAGTC
AGTCAGATTATTTGAGGAAAATATCTTTGAAGATGCTTACTATGGAAATCAAGAACCCTCACGTGGAAAATTCATTAACGTCCAATTCTATGGTGCCTAACAGTAAAGCC
TCTGGATTCTAG
mRNA sequenceShow/hide mRNA sequence
GGGACAGTTAGAAGTTCGATATATATTCCGACCGATCAACAAGTTGTAGATGGTTTCTCTCTTTTAAGTCATTTCGTGACGAACTTGGCCTCGCTCTCTACTCGCCGCGC
TCGAGGAGGGATGTCAAGATAGAGCCCTAGTCCCTCCTCTCTCTATTTCTTTGTATTCCTTCATTATACAACTTTAATCTTTGTTAAAGTACTATGCTATCTTTTTCTCT
CATAGTGTATATCGTGTACAAAGGAGGTCCACTCCTTTTGGCTCTTTGTTTCAATAAAATCCAAATTTATCCTCAAAATGCTTTCTCTTCATCTTCCATTTCTTCGCTCT
CGATTCAAATCCTTCGATTATTACCTTTTTCTTTTCAAAATTTCATCCTTAATTTCCGCCATGAAGATTGTTATTGTGTTTTTTGTTTTACATAATTTTTTCTTGTAGGT
TGTTTCCAAGCTTTTTTTGAATGGATATGAGCGATTGGAGACTCACTCAAGGTGGAGAACCTGGAGTTGAATCCGGCGATTGGAGGTCTCAATTGCAGCCCGATCTTCGA
CAACAAACTGTTAACAAGATAATGGAGACATTGAAGAGTCACCTTCCTGTTTCTGGTCACGAGGGATTGAGTGAGCTGAAAAAGATTGCCGAAAGGTTTGAAGAGAAGTT
GTACACTGCCGCTACCAGTCAGTCAGATTATTTGAGGAAAATATCTTTGAAGATGCTTACTATGGAAATCAAGAACCCTCACGTGGAAAATTCATTAACGTCCAATTCTA
TGGTGCCTAACAGTAAAGCCTCTGGATTCTAGTATGGACCCATTCCACGGTGACTAGGTTGAGGAGCTGCAACGATCATGAATAGAACGTCATTTTCTCCCGTGCATTGT
CGTGTTGTTTATTTTACGAATTATATATTGTTGGACTTTAGCATGTACTCTTTTAAACTCCTGAGATCCCGTAACTGTTTTAGAATTTGAACTCTTAGTATGCTTTTATG
GATGCTTTCATGAATTTACAAAACTCTTTATG
Protein sequenceShow/hide protein sequence
MDMSDWRLTQGGEPGVESGDWRSQLQPDLRQQTVNKIMETLKSHLPVSGHEGLSELKKIAERFEEKLYTAATSQSDYLRKISLKMLTMEIKNPHVENSLTSNSMVPNSKA
SGF