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Sed0002375 (gene) of Chayote v1 genome

Gene IDSed0002375
OrganismSechium edule (Chayote v1)
DescriptionRNase H domain-containing protein
Genome locationLG07:10498766..10499191
RNA-Seq ExpressionSed0002375
SyntenySed0002375
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_016684339.1 uncharacterized protein LOC107902718 [Gossypium hirsutum]3.1e-1336.04Show/hide
Query:  VQEVELGEALALKEGLRWAMELGFKHIVAESDAARVVHMVDGCAEDRSELKLITDDIHCLAKRLEWCSFSWCGRSANLVAHILAKEALNVDSETVWIEEV
        V  V + EALA+  GL++A++LGF +++ ESD+  VV+ +   +ED SE +  T D   LA++ + C F +  R  N   H++A E +  + +  W+E+V
Subjt:  VQEVELGEALALKEGLRWAMELGFKHIVAESDAARVVHMVDGCAEDRSELKLITDDIHCLAKRLEWCSFSWCGRSANLVAHILAKEALNVDSETVWIEEV

Query:  PALAIGVYESD
        P  A+ V +SD
Subjt:  PALAIGVYESD

XP_023914985.1 cytochrome P450 CYP82D47-like [Quercus suber]1.5e-1235.54Show/hide
Query:  MASLVKPLQAVQEVELGEALALKEGLRWAMELGFKHIVAESDAARVVHMVDGCAEDRSELKLITDDIHCLAKRLEWCSFSWCGRSANLVAHILAKEALNV
        +A+L + ++ VQE E+ E LA++  +R+A+E  F  ++ ESD+  VV  +   A+    +  I +D+  LAK L+ C F    R AN +AH L + A+ V
Subjt:  MASLVKPLQAVQEVELGEALALKEGLRWAMELGFKHIVAESDAARVVHMVDGCAEDRSELKLITDDIHCLAKRLEWCSFSWCGRSANLVAHILAKEALNV

Query:  DSETVWIEEVPALAIGVYESD
        D+   W+EE+P     V  SD
Subjt:  DSETVWIEEVPALAIGVYESD

XP_023920513.1 uncharacterized protein LOC112032047 [Quercus suber]4.0e-1342.34Show/hide
Query:  MASLVKPLQAVQEVELGEALALKEGLRWAMELGFKHIVAESDAARVVHMVDGCAEDRSELKLITDDIHCLAKRLEWCSFSWCGRSANLVAHILAKEALNV
        MA+L      VQ+ E  E LA ++ L +A+++G   ++ E D   V+  V     D S L  + +DIHCL   L WCS S   RSAN VAH LA+ A NV
Subjt:  MASLVKPLQAVQEVELGEALALKEGLRWAMELGFKHIVAESDAARVVHMVDGCAEDRSELKLITDDIHCLAKRLEWCSFSWCGRSANLVAHILAKEALNV

Query:  DSETVWIEEVP
          E VWIE+ P
Subjt:  DSETVWIEEVP

XP_023928427.1 uncharacterized protein LOC112039753 [Quercus suber]2.0e-1235.54Show/hide
Query:  MASLVKPLQAVQEVELGEALALKEGLRWAMELGFKHIVAESDAARVVHMVDGCAEDRSELKLITDDIHCLAKRLEWCSFSWCGRSANLVAHILAKEALNV
        + +L + ++ VQEVE+ E LA++  +R+A+E  F  ++ ESD+  VV  +   A+    ++ I +D+  LAK ++ C F    R AN VAH LA  A++V
Subjt:  MASLVKPLQAVQEVELGEALALKEGLRWAMELGFKHIVAESDAARVVHMVDGCAEDRSELKLITDDIHCLAKRLEWCSFSWCGRSANLVAHILAKEALNV

Query:  DSETVWIEEVPALAIGVYESD
        D+   W+EE+P     V   D
Subjt:  DSETVWIEEVPALAIGVYESD

XP_030924618.1 uncharacterized protein LOC115951582 [Quercus lobata]1.5e-1234.71Show/hide
Query:  MASLVKPLQAVQEVELGEALALKEGLRWAMELGFKHIVAESDAARVVHMVDGCAEDRSELKLITDDIHCLAKRLEWCSFSWCGRSANLVAHILAKEALNV
        +A+L + ++ VQ+ E+  ALA++  +R+A+E  F  ++ ESD+  VV  +   AE    +  I DD+  L+K ++ C F    R A  VAH +A+ A++V
Subjt:  MASLVKPLQAVQEVELGEALALKEGLRWAMELGFKHIVAESDAARVVHMVDGCAEDRSELKLITDDIHCLAKRLEWCSFSWCGRSANLVAHILAKEALNV

Query:  DSETVWIEEVPALAIGVYESD
        D+E  W+EE+P     V   D
Subjt:  DSETVWIEEVPALAIGVYESD

TrEMBL top hitse value%identityAlignment
A0A0D2QQ75 RNase H domain-containing protein1.1e-1133.33Show/hide
Query:  VQEVELGEALALKEGLRWAMELGFKHIVAESDAARVVHMVDGCAEDRSELKLITDDIHCLAKRLEWCSFSWCGRSANLVAHILAKEALNVDSETVWIEEV
        V  V + EAL +  GL++A++L F +++ ESD+  VV+ +   +ED SE +    D+  LA++ + C F +  R  N  AH++A E +  + ++ W+E+ 
Subjt:  VQEVELGEALALKEGLRWAMELGFKHIVAESDAARVVHMVDGCAEDRSELKLITDDIHCLAKRLEWCSFSWCGRSANLVAHILAKEALNVDSETVWIEEV

Query:  PALAIGVYESD
        P  A+ V +SD
Subjt:  PALAIGVYESD

A0A1U8J822 uncharacterized protein LOC1079027181.5e-1336.04Show/hide
Query:  VQEVELGEALALKEGLRWAMELGFKHIVAESDAARVVHMVDGCAEDRSELKLITDDIHCLAKRLEWCSFSWCGRSANLVAHILAKEALNVDSETVWIEEV
        V  V + EALA+  GL++A++LGF +++ ESD+  VV+ +   +ED SE +  T D   LA++ + C F +  R  N   H++A E +  + +  W+E+V
Subjt:  VQEVELGEALALKEGLRWAMELGFKHIVAESDAARVVHMVDGCAEDRSELKLITDDIHCLAKRLEWCSFSWCGRSANLVAHILAKEALNVDSETVWIEEV

Query:  PALAIGVYESD
        P  A+ V +SD
Subjt:  PALAIGVYESD

A0A7J8QTV4 RNase H domain-containing protein1.3e-1234.91Show/hide
Query:  EALALKEGLRWAMELGFKHIVAESDAARVVHMVDGCAEDRSELKLITDDIHCLAKRLEWCSFSWCGRSANLVAHILAKEALNVDSETVWIEEVPALAIGV
        ++L +  GL++A++LGF +++ ESD+  VV+ +   +ED SE +L T D+  LA++ + C F +  R  N  AH++A E +  + +  W+E+ P  A+ V
Subjt:  EALALKEGLRWAMELGFKHIVAESDAARVVHMVDGCAEDRSELKLITDDIHCLAKRLEWCSFSWCGRSANLVAHILAKEALNVDSETVWIEEVPALAIGV

Query:  YESDLQ
         +SD Q
Subjt:  YESDLQ

A0A7J9D462 Uncharacterized protein1.1e-1133.33Show/hide
Query:  VQEVELGEALALKEGLRWAMELGFKHIVAESDAARVVHMVDGCAEDRSELKLITDDIHCLAKRLEWCSFSWCGRSANLVAHILAKEALNVDSETVWIEEV
        V  V + EA+A+  GL++A+++GF  ++ ESD+  VV+ +   +ED SE +  T D+  LA++   C F +  R  N  AH L  E +  + ++ W+E+ 
Subjt:  VQEVELGEALALKEGLRWAMELGFKHIVAESDAARVVHMVDGCAEDRSELKLITDDIHCLAKRLEWCSFSWCGRSANLVAHILAKEALNVDSETVWIEEV

Query:  PALAIGVYESD
        P   + V +SD
Subjt:  PALAIGVYESD

A0A7N2LMP2 Uncharacterized protein8.1e-1241.53Show/hide
Query:  MASLVKPLQAVQEVELGEALALKEGLRWAMELGFKHIVAESDAARVVHMVDGCAEDRSELKLITDDIHCLAKRLEWCSFSWCGRSANLVAHILAKEALNV
        MA+L     AV++ E  E LA ++ L +A++ GF  IV E D A V+ M+     D S L LI +DI CLA      S++   RSAN VAH LA+ A  +
Subjt:  MASLVKPLQAVQEVELGEALALKEGLRWAMELGFKHIVAESDAARVVHMVDGCAEDRSELKLITDDIHCLAKRLEWCSFSWCGRSANLVAHILAKEALNV

Query:  DSETVWIEEVPALAIGVY
        D+E VW+EE P  A+  +
Subjt:  DSETVWIEEVPALAIGVY

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCTCCTTGGTTAAACCGTTGCAAGCTGTTCAAGAAGTGGAGTTAGGAGAAGCTCTAGCTTTAAAGGAAGGTCTTCGCTGGGCTATGGAGTTGGGGTTTAAGCATAT
TGTGGCTGAATCTGATGCTGCTCGGGTTGTTCATATGGTGGATGGTTGTGCGGAGGATCGATCAGAGCTGAAATTAATTACAGATGACATTCACTGTTTGGCTAAGAGGC
TGGAGTGGTGTTCCTTTTCTTGGTGTGGGAGGAGTGCAAACTTGGTGGCTCACATTTTAGCAAAAGAAGCCCTCAATGTAGATTCTGAAACTGTTTGGATTGAAGAAGTT
CCTGCACTTGCAATTGGTGTTTATGAAAGTGACTTGCAGAGAATACAAGAGTTGGTTATTGTTTCTCCTACTGCTAGTGTTTCTGAATTACAATAG
mRNA sequenceShow/hide mRNA sequence
ATGGCCTCCTTGGTTAAACCGTTGCAAGCTGTTCAAGAAGTGGAGTTAGGAGAAGCTCTAGCTTTAAAGGAAGGTCTTCGCTGGGCTATGGAGTTGGGGTTTAAGCATAT
TGTGGCTGAATCTGATGCTGCTCGGGTTGTTCATATGGTGGATGGTTGTGCGGAGGATCGATCAGAGCTGAAATTAATTACAGATGACATTCACTGTTTGGCTAAGAGGC
TGGAGTGGTGTTCCTTTTCTTGGTGTGGGAGGAGTGCAAACTTGGTGGCTCACATTTTAGCAAAAGAAGCCCTCAATGTAGATTCTGAAACTGTTTGGATTGAAGAAGTT
CCTGCACTTGCAATTGGTGTTTATGAAAGTGACTTGCAGAGAATACAAGAGTTGGTTATTGTTTCTCCTACTGCTAGTGTTTCTGAATTACAATAG
Protein sequenceShow/hide protein sequence
MASLVKPLQAVQEVELGEALALKEGLRWAMELGFKHIVAESDAARVVHMVDGCAEDRSELKLITDDIHCLAKRLEWCSFSWCGRSANLVAHILAKEALNVDSETVWIEEV
PALAIGVYESDLQRIQELVIVSPTASVSELQ