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Sed0002376 (gene) of Chayote v1 genome

Gene IDSed0002376
OrganismSechium edule (Chayote v1)
DescriptionDNA-directed RNA polymerase subunit 10-like protein
Genome locationLG04:27916..28512
RNA-Seq ExpressionSed0002376
SyntenySed0002376
Gene Ontology termsGO:0006360 - transcription by RNA polymerase I (biological process)
GO:0006366 - transcription by RNA polymerase II (biological process)
GO:0042797 - tRNA transcription by RNA polymerase III (biological process)
GO:0005665 - RNA polymerase II, core complex (cellular component)
GO:0005666 - RNA polymerase III complex (cellular component)
GO:0005736 - RNA polymerase I complex (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0003899 - DNA-directed 5'-3' RNA polymerase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR000268 - DNA-directed RNA polymerase, subunit N/Rpb10
IPR020789 - RNA polymerases, subunit N, zinc binding site
IPR023580 - RNA polymerase subunit RPB10


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004138685.1 DNA-directed RNA polymerases I, II, and III subunit RPABC5 [Cucumis sativus]7.6e-2378.87Show/hide
Query:  MIIPVRCFTCGKVIGNKWDNYTLIVTLSF-----LDALGLVRYCCRRMLMTHVDLIEKLLNYNTLDKSDAS
        MIIPVRCFTCGKVIGNKWD+Y  ++   +     LDALGLVRYCCRRMLMTHVDLIEKLLNYNTLDKSD S
Subjt:  MIIPVRCFTCGKVIGNKWDNYTLIVTLSF-----LDALGLVRYCCRRMLMTHVDLIEKLLNYNTLDKSDAS
XP_006483895.1 DNA-directed RNA polymerase subunit 10-like protein [Citrus sinensis]9.9e-2378.87Show/hide
Query:  MIIPVRCFTCGKVIGNKWDNYTLIVTLSF-----LDALGLVRYCCRRMLMTHVDLIEKLLNYNTLDKSDAS
        MIIPVRCFTCGKVIGNKWD Y  ++   +     LDALGLVRYCCRRMLMTHVDLIEKLLNYNTLDKSD S
Subjt:  MIIPVRCFTCGKVIGNKWDNYTLIVTLSF-----LDALGLVRYCCRRMLMTHVDLIEKLLNYNTLDKSDAS
XP_008373233.1 DNA-directed RNA polymerase subunit 10-like protein [Malus domestica]9.9e-2378.87Show/hide
Query:  MIIPVRCFTCGKVIGNKWDNYTLIVTLSF-----LDALGLVRYCCRRMLMTHVDLIEKLLNYNTLDKSDAS
        MIIPVRCFTCGKVIGNKWD Y  ++   +     LDALGLVRYCCRRMLMTHVDLIEKLLNYNTL+KSDAS
Subjt:  MIIPVRCFTCGKVIGNKWDNYTLIVTLSF-----LDALGLVRYCCRRMLMTHVDLIEKLLNYNTLDKSDAS
XP_010696273.1 PREDICTED: DNA-directed RNA polymerases I, II, and III subunit RPABC5 [Beta vulgaris subsp. vulgaris]9.9e-2378.87Show/hide
Query:  MIIPVRCFTCGKVIGNKWDNYTLIVTLSF-----LDALGLVRYCCRRMLMTHVDLIEKLLNYNTLDKSDAS
        MIIPVRCFTCGKVIGNKWD Y  ++   +     LDALGLVRYCCRRMLMTHVDLIEKLLNYNTLDKSD S
Subjt:  MIIPVRCFTCGKVIGNKWDNYTLIVTLSF-----LDALGLVRYCCRRMLMTHVDLIEKLLNYNTLDKSDAS
XP_023536875.1 DNA-directed RNA polymerases I, II, and III subunit RPABC5 [Cucurbita pepo subsp. pepo]9.9e-2378.87Show/hide
Query:  MIIPVRCFTCGKVIGNKWDNYTLIVTLSF-----LDALGLVRYCCRRMLMTHVDLIEKLLNYNTLDKSDAS
        MIIPVRCFTCGKVIGNKWD Y  ++   +     LDALGLVRYCCRRMLMTHVDLIEKLLNYNTLDKSD S
Subjt:  MIIPVRCFTCGKVIGNKWDNYTLIVTLSF-----LDALGLVRYCCRRMLMTHVDLIEKLLNYNTLDKSDAS
TrEMBL top hitse value%identityAlignment
A0A0A0LPW4 Uncharacterized protein3.7e-2378.87Show/hide
Query:  MIIPVRCFTCGKVIGNKWDNYTLIVTLSF-----LDALGLVRYCCRRMLMTHVDLIEKLLNYNTLDKSDAS
        MIIPVRCFTCGKVIGNKWD+Y  ++   +     LDALGLVRYCCRRMLMTHVDLIEKLLNYNTLDKSD S
Subjt:  MIIPVRCFTCGKVIGNKWDNYTLIVTLSF-----LDALGLVRYCCRRMLMTHVDLIEKLLNYNTLDKSDAS
A0A1S3C3L9 DNA-directed RNA polymerases I, II, and III subunit RPABC53.7e-2378.87Show/hide
Query:  MIIPVRCFTCGKVIGNKWDNYTLIVTLSF-----LDALGLVRYCCRRMLMTHVDLIEKLLNYNTLDKSDAS
        MIIPVRCFTCGKVIGNKWD+Y  ++   +     LDALGLVRYCCRRMLMTHVDLIEKLLNYNTLDKSD S
Subjt:  MIIPVRCFTCGKVIGNKWDNYTLIVTLSF-----LDALGLVRYCCRRMLMTHVDLIEKLLNYNTLDKSDAS
A0A6J1BRM3 DNA-directed RNA polymerases I, II, and III subunit RPABC53.7e-2378.87Show/hide
Query:  MIIPVRCFTCGKVIGNKWDNYTLIVTLSF-----LDALGLVRYCCRRMLMTHVDLIEKLLNYNTLDKSDAS
        MIIPVRCFTCGKVIGNKWD+Y  ++   +     LDALGLVRYCCRRMLMTHVDLIEKLLNYNTLDKSD S
Subjt:  MIIPVRCFTCGKVIGNKWDNYTLIVTLSF-----LDALGLVRYCCRRMLMTHVDLIEKLLNYNTLDKSDAS
A0A6J1GGE0 DNA-directed RNA polymerases I, II, and III subunit RPABC53.7e-2378.87Show/hide
Query:  MIIPVRCFTCGKVIGNKWDNYTLIVTLSF-----LDALGLVRYCCRRMLMTHVDLIEKLLNYNTLDKSDAS
        MIIPVRCFTCGKVIGNKWD+Y  ++   +     LDALGLVRYCCRRMLMTHVDLIEKLLNYNTLDKSD S
Subjt:  MIIPVRCFTCGKVIGNKWDNYTLIVTLSF-----LDALGLVRYCCRRMLMTHVDLIEKLLNYNTLDKSDAS
A0A6J1KRF4 DNA-directed RNA polymerases I, II, and III subunit RPABC53.7e-2378.87Show/hide
Query:  MIIPVRCFTCGKVIGNKWDNYTLIVTLSF-----LDALGLVRYCCRRMLMTHVDLIEKLLNYNTLDKSDAS
        MIIPVRCFTCGKVIGNKWD+Y  ++   +     LDALGLVRYCCRRMLMTHVDLIEKLLNYNTLDKSD S
Subjt:  MIIPVRCFTCGKVIGNKWDNYTLIVTLSF-----LDALGLVRYCCRRMLMTHVDLIEKLLNYNTLDKSDAS
SwissProt top hitse value%identityAlignment
Q39290 DNA-directed RNA polymerases I, II, and III subunit RPABC51.4e-2477.46Show/hide
Query:  MIIPVRCFTCGKVIGNKWDNYTLIVTLSF-----LDALGLVRYCCRRMLMTHVDLIEKLLNYNTLDKSDAS
        MIIPVRCFTCGKVIGNKWD Y  ++ L +     LDAL LVRYCCRRMLMTHVDLIEKLLNYNTL+KSD S
Subjt:  MIIPVRCFTCGKVIGNKWDNYTLIVTLSF-----LDALGLVRYCCRRMLMTHVDLIEKLLNYNTLDKSDAS
Q55AB6 DNA-directed RNA polymerases I, II, and III subunit rpabc51.4e-1970.77Show/hide
Query:  MIIPVRCFTCGKVIGNKWDNYTLIVTLSF-----LDALGLVRYCCRRMLMTHVDLIEKLLNYNTL
        MIIPVRCFTCGKVIGNKWD Y  ++ + +     LDAL L RYCCRRML+THVDLIEKLLNY  L
Subjt:  MIIPVRCFTCGKVIGNKWDNYTLIVTLSF-----LDALGLVRYCCRRMLMTHVDLIEKLLNYNTL
Q8LFJ6 DNA-directed RNA polymerases II, IV and V subunit 101.4e-2477.46Show/hide
Query:  MIIPVRCFTCGKVIGNKWDNYTLIVTLSF-----LDALGLVRYCCRRMLMTHVDLIEKLLNYNTLDKSDAS
        MIIPVRCFTCGKVIGNKWD Y  ++ L +     LDAL LVRYCCRRMLMTHVDLIEKLLNYNTL+KSD S
Subjt:  MIIPVRCFTCGKVIGNKWDNYTLIVTLSF-----LDALGLVRYCCRRMLMTHVDLIEKLLNYNTLDKSDAS
Q9SYA6 DNA-directed RNA polymerase subunit 10-like protein1.9e-2475.36Show/hide
Query:  MIIPVRCFTCGKVIGNKWDNYTLIVTLSF-----LDALGLVRYCCRRMLMTHVDLIEKLLNYNTLDKSD
        MI+PVRCFTCGKVIGNKWD Y  ++   +     LDALGLVRYCCRRMLMTHVDLIEKLLNYNT++KSD
Subjt:  MIIPVRCFTCGKVIGNKWDNYTLIVTLSF-----LDALGLVRYCCRRMLMTHVDLIEKLLNYNTLDKSD
Q9VC49 DNA-directed RNA polymerases I, II, and III subunit RPABC51.4e-1967.16Show/hide
Query:  MIIPVRCFTCGKVIGNKWDNYTLIVTLSF-----LDALGLVRYCCRRMLMTHVDLIEKLLNYNTLDK
        MIIP+RCFTCGKVIGNKW++Y  ++   +     LDALGL RYCCRRML+ HVDLIEKLLNY  L+K
Subjt:  MIIPVRCFTCGKVIGNKWDNYTLIVTLSF-----LDALGLVRYCCRRMLMTHVDLIEKLLNYNTLDK
Arabidopsis top hitse value%identityAlignment
AT1G11475.1 RNA polymerases N / 8 kDa subunit1.0e-2577.46Show/hide
Query:  MIIPVRCFTCGKVIGNKWDNYTLIVTLSF-----LDALGLVRYCCRRMLMTHVDLIEKLLNYNTLDKSDAS
        MIIPVRCFTCGKVIGNKWD Y  ++ L +     LDAL LVRYCCRRMLMTHVDLIEKLLNYNTL+KSD S
Subjt:  MIIPVRCFTCGKVIGNKWDNYTLIVTLSF-----LDALGLVRYCCRRMLMTHVDLIEKLLNYNTLDKSDAS
AT1G61700.1 RNA polymerases N / 8 kDa subunit1.3e-2575.36Show/hide
Query:  MIIPVRCFTCGKVIGNKWDNYTLIVTLSF-----LDALGLVRYCCRRMLMTHVDLIEKLLNYNTLDKSD
        MI+PVRCFTCGKVIGNKWD Y  ++   +     LDALGLVRYCCRRMLMTHVDLIEKLLNYNT++KSD
Subjt:  MIIPVRCFTCGKVIGNKWDNYTLIVTLSF-----LDALGLVRYCCRRMLMTHVDLIEKLLNYNTLDKSD

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATCATCCCAGTGCGTTGCTTTACTTGCGGAAAGGTGATTGGAAACAAATGGGATAATTACACCTTGATCGTAACCCTTTCTTTCTTGGATGCACTGGGCTTGGTTCG
CTACTGCTGTAGGCGAATGCTCATGACTCACGTTGACCTTATTGAAAAGCTACTTAATTACAATACTCTTGATAAGTCTGATGCCAGTTAG
mRNA sequenceShow/hide mRNA sequence
ATGATCATCCCAGTGCGTTGCTTTACTTGCGGAAAGGTGATTGGAAACAAATGGGATAATTACACCTTGATCGTAACCCTTTCTTTCTTGGATGCACTGGGCTTGGTTCG
CTACTGCTGTAGGCGAATGCTCATGACTCACGTTGACCTTATTGAAAAGCTACTTAATTACAATACTCTTGATAAGTCTGATGCCAGTTAG
Protein sequenceShow/hide protein sequence
MIIPVRCFTCGKVIGNKWDNYTLIVTLSFLDALGLVRYCCRRMLMTHVDLIEKLLNYNTLDKSDAS