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Sed0002431 (gene) of Chayote v1 genome

Gene IDSed0002431
OrganismSechium edule (Chayote v1)
DescriptionLINE-1 retrotransposable element ORF2 protein
Genome locationLG09:29470418..29470918
RNA-Seq ExpressionSed0002431
SyntenySed0002431
Gene Ontology termsGO:0009987 - cellular process (biological process)
GO:0110165 - cellular anatomical structure (cellular component)
GO:0005488 - binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0035247.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]5.6e-2233.95Show/hide
Query:  MRVTPIMTLIDRFLLTDDMINKFDCAKARRLERVTSDHYPICLPLSKERWGPTPFRFMNTWLDHRSFTPLLEKWWLDNAICDWPGHGFIQKLKAFKLIVK
        +R+ P  + +DRFLL+    N F    +R +ER+ SDH+PI L   + +WGP PFR  N+ L  + F      WW ++    +PG+ FIQ LK+   ++K
Subjt:  MRVTPIMTLIDRFLLTDDMINKFDCAKARRLERVTSDHYPICLPLSKERWGPTPFRFMNTWLDHRSFTPLLEKWWLDNAICDWPGHGFIQKLKAFKLIVK

Query:  EWNHRTFSHHKAFCLAFKEELDSIDNEEELANLTTNELHRRLEIKAEIMELTSREDALRRQR
        EW H   + + A      EE+DSID  E   N++T    +R+ +K+E++ + + +  +  QR
Subjt:  EWNHRTFSHHKAFCLAFKEELDSIDNEEELANLTTNELHRRLEIKAEIMELTSREDALRRQR

RVW19678.1 Structural maintenance of chromosomes protein 3, partial [Vitis vinifera]1.4e-2037.04Show/hide
Query:  MRVTPIMTLIDRFLLTDDMINKFDCAKARRLERVTSDHYPICLPLSKERWGPTPFRFMNTWLDHRSFTPLLEKWWLDNAICDWPGHGFIQKLKAFKLIVK
        M+V PI   +DRFL + +  + F       L R TSDH PICL  +   WGPTPFRF N WL H  F      WW +  +  W GH F++KLK  K  +K
Subjt:  MRVTPIMTLIDRFLLTDDMINKFDCAKARRLERVTSDHYPICLPLSKERWGPTPFRFMNTWLDHRSFTPLLEKWWLDNAICDWPGHGFIQKLKAFKLIVK

Query:  EWNHRTFSHHKAFCLAFKEELDSIDNEEELANLTTNELHRRLEIKAEIMELTSREDALRRQR
        EWN R F   +        +L  ID  E+  NL    +  R+  + E+ +L  +E+   RQ+
Subjt:  EWNHRTFSHHKAFCLAFKEELDSIDNEEELANLTTNELHRRLEIKAEIMELTSREDALRRQR

RVW51134.1 SWI/SNF complex subunit SWI3C [Vitis vinifera]1.8e-2037.04Show/hide
Query:  MRVTPIMTLIDRFLLTDDMINKFDCAKARRLERVTSDHYPICLPLSKERWGPTPFRFMNTWLDHRSFTPLLEKWWLDNAICDWPGHGFIQKLKAFKLIVK
        M+V PI   +DRFL + +  + F       L R TSDH PICL  +   WGPTPFRF N WL H  F      WW + ++  W GH F++KLK  K  +K
Subjt:  MRVTPIMTLIDRFLLTDDMINKFDCAKARRLERVTSDHYPICLPLSKERWGPTPFRFMNTWLDHRSFTPLLEKWWLDNAICDWPGHGFIQKLKAFKLIVK

Query:  EWNHRTFSHHKAFCLAFKEELDSIDNEEELANLTTNELHRRLEIKAEIMELTSREDALRRQR
        EWN R F   +        +L  ID  E+  NL    +  R+  + E+ +L  +E+   RQ+
Subjt:  EWNHRTFSHHKAFCLAFKEELDSIDNEEELANLTTNELHRRLEIKAEIMELTSREDALRRQR

RVX12042.1 Splicing factor 3A subunit 2 [Vitis vinifera]1.4e-2037.04Show/hide
Query:  MRVTPIMTLIDRFLLTDDMINKFDCAKARRLERVTSDHYPICLPLSKERWGPTPFRFMNTWLDHRSFTPLLEKWWLDNAICDWPGHGFIQKLKAFKLIVK
        M+V PI   +DRFL + +  + F       L R TSDH PICL  +   WGPTPFRF N WL H  F      WW +  +  W GH F++KLK  K  +K
Subjt:  MRVTPIMTLIDRFLLTDDMINKFDCAKARRLERVTSDHYPICLPLSKERWGPTPFRFMNTWLDHRSFTPLLEKWWLDNAICDWPGHGFIQKLKAFKLIVK

Query:  EWNHRTFSHHKAFCLAFKEELDSIDNEEELANLTTNELHRRLEIKAEIMELTSREDALRRQR
        EWN R F   +        +L  ID  E+  NL    +  R+  + E+ +L  +E+   RQ+
Subjt:  EWNHRTFSHHKAFCLAFKEELDSIDNEEELANLTTNELHRRLEIKAEIMELTSREDALRRQR

XP_022158956.1 uncharacterized protein LOC111025405 [Momordica charantia]4.9e-2639.38Show/hide
Query:  TLIDRFLLTDDMINKFDCAKARRLERVTSDHYPICLPLSKERWGPTPFRFMNTWLDHRSFTPLLEKWWLDNAICDWPGHGFIQKLKAFKLIVKEWNHRTF
        +LID FLLT+  I+K     A+R+ R TSDH+PI L   +  WG TPFRF N WL H++F P LE WW +  +  WPGHG + KLK+ K  +K W     
Subjt:  TLIDRFLLTDDMINKFDCAKARRLERVTSDHYPICLPLSKERWGPTPFRFMNTWLDHRSFTPLLEKWWLDNAICDWPGHGFIQKLKAFKLIVKEWNHRTF

Query:  SHHKAFCLAFKEEL----DSIDNEEELANLTTNELHRRLEIKAEIMELTSREDALRRQRC
        + H     + KE+L    +S+D+ E    +T ++   R++ K +++ + ++E+A  RQRC
Subjt:  SHHKAFCLAFKEEL----DSIDNEEELANLTTNELHRRLEIKAEIMELTSREDALRRQRC

TrEMBL top hitse value%identityAlignment
A0A438JSU9 Splicing factor 3A subunit 26.6e-2137.04Show/hide
Query:  MRVTPIMTLIDRFLLTDDMINKFDCAKARRLERVTSDHYPICLPLSKERWGPTPFRFMNTWLDHRSFTPLLEKWWLDNAICDWPGHGFIQKLKAFKLIVK
        M+V PI   +DRFL + +  + F       L R TSDH PICL  +   WGPTPFRF N WL H  F      WW +  +  W GH F++KLK  K  +K
Subjt:  MRVTPIMTLIDRFLLTDDMINKFDCAKARRLERVTSDHYPICLPLSKERWGPTPFRFMNTWLDHRSFTPLLEKWWLDNAICDWPGHGFIQKLKAFKLIVK

Query:  EWNHRTFSHHKAFCLAFKEELDSIDNEEELANLTTNELHRRLEIKAEIMELTSREDALRRQR
        EWN R F   +        +L  ID  E+  NL    +  R+  + E+ +L  +E+   RQ+
Subjt:  EWNHRTFSHHKAFCLAFKEELDSIDNEEELANLTTNELHRRLEIKAEIMELTSREDALRRQR

A0A5D3DFM9 LINE-1 retrotransposable element ORF2 protein2.7e-2233.95Show/hide
Query:  MRVTPIMTLIDRFLLTDDMINKFDCAKARRLERVTSDHYPICLPLSKERWGPTPFRFMNTWLDHRSFTPLLEKWWLDNAICDWPGHGFIQKLKAFKLIVK
        +R+ P  + +DRFLL+    N F    +R +ER+ SDH+PI L   + +WGP PFR  N+ L  + F      WW ++    +PG+ FIQ LK+   ++K
Subjt:  MRVTPIMTLIDRFLLTDDMINKFDCAKARRLERVTSDHYPICLPLSKERWGPTPFRFMNTWLDHRSFTPLLEKWWLDNAICDWPGHGFIQKLKAFKLIVK

Query:  EWNHRTFSHHKAFCLAFKEELDSIDNEEELANLTTNELHRRLEIKAEIMELTSREDALRRQR
        EW H   + + A      EE+DSID  E   N++T    +R+ +K+E++ + + +  +  QR
Subjt:  EWNHRTFSHHKAFCLAFKEELDSIDNEEELANLTTNELHRRLEIKAEIMELTSREDALRRQR

A0A6J1E2G6 uncharacterized protein LOC1110254052.4e-2639.38Show/hide
Query:  TLIDRFLLTDDMINKFDCAKARRLERVTSDHYPICLPLSKERWGPTPFRFMNTWLDHRSFTPLLEKWWLDNAICDWPGHGFIQKLKAFKLIVKEWNHRTF
        +LID FLLT+  I+K     A+R+ R TSDH+PI L   +  WG TPFRF N WL H++F P LE WW +  +  WPGHG + KLK+ K  +K W     
Subjt:  TLIDRFLLTDDMINKFDCAKARRLERVTSDHYPICLPLSKERWGPTPFRFMNTWLDHRSFTPLLEKWWLDNAICDWPGHGFIQKLKAFKLIVKEWNHRTF

Query:  SHHKAFCLAFKEEL----DSIDNEEELANLTTNELHRRLEIKAEIMELTSREDALRRQRC
        + H     + KE+L    +S+D+ E    +T ++   R++ K +++ + ++E+A  RQRC
Subjt:  SHHKAFCLAFKEEL----DSIDNEEELANLTTNELHRRLEIKAEIMELTSREDALRRQRC

A0A803QEA6 Uncharacterized protein3.9e-2135.48Show/hide
Query:  RVTPIMTLIDRFLLTDDMINKFDCAKARRLERVTSDHYPICLPLSKERWGPTPFRFMNTWLDHRSFTPLLEKWWLDNAICDWPGHGFIQKLKAFKLIVKE
        R +P+ + +DRFL T++    F   +   L R+ SDH P+ +  +  +WGP PFRF N WLDH+SF+   E+WW +     WPG  F++KLK  +  VKE
Subjt:  RVTPIMTLIDRFLLTDDMINKFDCAKARRLERVTSDHYPICLPLSKERWGPTPFRFMNTWLDHRSFTPLLEKWWLDNAICDWPGHGFIQKLKAFKLIVKE

Query:  WNHRTFSHHKAFCLAFKEELDSIDNEEELANLTTNELHRRLEIKAEIMELTSRED
        W+  TF  ++A  +A +  L  +D  E  +    + L  R ++K E   L   E+
Subjt:  WNHRTFSHHKAFCLAFKEELDSIDNEEELANLTTNELHRRLEIKAEIMELTSRED

A0A803QQM3 Uncharacterized protein5.1e-2134.19Show/hide
Query:  RVTPIMTLIDRFLLTDDMINKFDCAKARRLERVTSDHYPICLPLSKERWGPTPFRFMNTWLDHRSFTPLLEKWWLDNAICDWPGHGFIQKLKAFKLIVKE
        R +P+ + +DRFL +++    +   +   L R+ SDH P+ +  +  +WGP PFRF N WL+H+SF+   E WW +     WPG  F++KLK  +  VKE
Subjt:  RVTPIMTLIDRFLLTDDMINKFDCAKARRLERVTSDHYPICLPLSKERWGPTPFRFMNTWLDHRSFTPLLEKWWLDNAICDWPGHGFIQKLKAFKLIVKE

Query:  WNHRTFSHHKAFCLAFKEELDSIDNEEELANLTTNELHRRLEIKAEIMELTSRED
        W+  TF  +KA  +A +  L  +D  E  ++   + L  R ++K E  +L   E+
Subjt:  WNHRTFSHHKAFCLAFKEELDSIDNEEELANLTTNELHRRLEIKAEIMELTSRED

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCGAGTTACTCCGATCATGACCCTGATTGACAGATTTCTGCTCACCGATGATATGATAAACAAATTTGATTGTGCCAAGGCTCGCAGGCTGGAGAGGGTCACATCTGA
CCACTATCCCATTTGCCTTCCTCTTAGTAAAGAAAGATGGGGCCCGACCCCTTTTAGATTTATGAACACATGGTTGGATCATCGCTCTTTTACCCCCCTGTTGGAGAAAT
GGTGGTTGGATAATGCTATTTGTGATTGGCCTGGACATGGATTCATCCAAAAGCTCAAAGCTTTTAAGTTGATTGTTAAGGAATGGAATCACAGAACTTTTAGTCATCAT
AAGGCTTTTTGCCTTGCTTTCAAAGAAGAGCTTGACTCCATTGACAACGAAGAAGAATTGGCTAATTTAACCACAAATGAATTGCACAGAAGGCTTGAAATCAAGGCTGA
GATTATGGAATTGACTTCTAGGGAAGATGCTCTCCGGCGGCAAAGGTGCACAGCGCAGTGA
mRNA sequenceShow/hide mRNA sequence
ATGCGAGTTACTCCGATCATGACCCTGATTGACAGATTTCTGCTCACCGATGATATGATAAACAAATTTGATTGTGCCAAGGCTCGCAGGCTGGAGAGGGTCACATCTGA
CCACTATCCCATTTGCCTTCCTCTTAGTAAAGAAAGATGGGGCCCGACCCCTTTTAGATTTATGAACACATGGTTGGATCATCGCTCTTTTACCCCCCTGTTGGAGAAAT
GGTGGTTGGATAATGCTATTTGTGATTGGCCTGGACATGGATTCATCCAAAAGCTCAAAGCTTTTAAGTTGATTGTTAAGGAATGGAATCACAGAACTTTTAGTCATCAT
AAGGCTTTTTGCCTTGCTTTCAAAGAAGAGCTTGACTCCATTGACAACGAAGAAGAATTGGCTAATTTAACCACAAATGAATTGCACAGAAGGCTTGAAATCAAGGCTGA
GATTATGGAATTGACTTCTAGGGAAGATGCTCTCCGGCGGCAAAGGTGCACAGCGCAGTGA
Protein sequenceShow/hide protein sequence
MRVTPIMTLIDRFLLTDDMINKFDCAKARRLERVTSDHYPICLPLSKERWGPTPFRFMNTWLDHRSFTPLLEKWWLDNAICDWPGHGFIQKLKAFKLIVKEWNHRTFSHH
KAFCLAFKEELDSIDNEEELANLTTNELHRRLEIKAEIMELTSREDALRRQRCTAQ