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Sed0002454 (gene) of Chayote v1 genome

Gene IDSed0002454
OrganismSechium edule (Chayote v1)
DescriptionRNase H domain-containing protein
Genome locationLG06:2894795..2895244
RNA-Seq ExpressionSed0002454
SyntenySed0002454
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_023887146.1 uncharacterized protein LOC111999255 [Quercus suber]1.4e-1640.77Show/hide
Query:  MGEVVRNDRGEVMVAVAKPIQQVLQVEVGEALAIRDGIQWAMELGFRRLEVETDAEIVVKKLANNVIDRSDLGAVLMDIQELATNLECCIFSWCNRRANS
        +G ++RND G VM A    I     VE+ E LA R  + +A ELGF  + VE D+EIV+K L+ N    S +G ++ D++ LA++L    F+   R+ N 
Subjt:  MGEVVRNDRGEVMVAVAKPIQQVLQVEVGEALAIRDGIQWAMELGFRRLEVETDAEIVVKKLANNVIDRSDLGAVLMDIQELATNLECCIFSWCNRRANS

Query:  VAHGLARRALEYEDFRCWIEDLPAAAYACY
        VAHGLAR A  +  F+ W+ED+P A    Y
Subjt:  VAHGLARRALEYEDFRCWIEDLPAAAYACY

XP_023889222.1 LOW QUALITY PROTEIN: uncharacterized protein LOC112001275 [Quercus suber]2.0e-1540.8Show/hide
Query:  MGEVVRNDRGEVMVAVAKPIQQVLQVEVGEALAIRDGIQWAMELGFRRLEVETDAEIVVKKLANNVIDRSDLGAVLMDIQELATNLECCIFSWCNRRANS
        +G ++RND G VM A    I     VE+ E LA R  + +A ELGF  + VE D+EIV+K L+ N    S +G ++ D++ LA++L    F+   R+ N 
Subjt:  MGEVVRNDRGEVMVAVAKPIQQVLQVEVGEALAIRDGIQWAMELGFRRLEVETDAEIVVKKLANNVIDRSDLGAVLMDIQELATNLECCIFSWCNRRANS

Query:  VAHGLARRALEYEDFRCWIEDLPAA
        VAHGLAR A  +  F+ W+E +P A
Subjt:  VAHGLARRALEYEDFRCWIEDLPAA

XP_023918538.1 uncharacterized protein LOC112030088 [Quercus suber]5.3e-1633.58Show/hide
Query:  MGEVVRNDRGEVMVAVAKPIQQVLQVEVGEALAIRDGIQWAMELGFRRLEVETDAEIVVKKLANNVIDRSDLGAVLMDIQELATNLECCIFSWCNRRANS
        +G ++RNDRG VM  + + I     VE+ E LA R  + +A ELGF ++ +E D+EI ++ + ++    +  G ++ DI+ L+++  C IF    R+ N 
Subjt:  MGEVVRNDRGEVMVAVAKPIQQVLQVEVGEALAIRDGIQWAMELGFRRLEVETDAEIVVKKLANNVIDRSDLGAVLMDIQELATNLECCIFSWCNRRANS

Query:  VAHGLARRALEYEDFRCWIEDLPAAAYACYERDKLSV
        VAH LAR A  +  F  W+E++P +++A Y  + +++
Subjt:  VAHGLARRALEYEDFRCWIEDLPAAAYACYERDKLSV

XP_023920779.1 uncharacterized protein LOC112032247 [Quercus suber]2.0e-1541.73Show/hide
Query:  MGEVVRNDRGEVMVAVAKPIQQVLQVEVGEALAIRDGIQWAMELGFRRLEVETDAEIVVKKLANNVIDRSDLGAVLMDIQELATNLECCIFSWCNRRANS
        +G V+RND GEVM A++     V    V E LA R  +++A E GF  L VE D   V+K LA + +DRS LG ++ DI+ LA N     FS+  R AN+
Subjt:  MGEVVRNDRGEVMVAVAKPIQQVLQVEVGEALAIRDGIQWAMELGFRRLEVETDAEIVVKKLANNVIDRSDLGAVLMDIQELATNLECCIFSWCNRRANS

Query:  VAHGLARRALEYEDFRCWIED---LPAAAYACYERDKLS
        VAHGLAR A    +   W+ED    P     CY+  +L+
Subjt:  VAHGLARRALEYEDFRCWIED---LPAAAYACYERDKLS

XP_030934661.1 uncharacterized protein LOC115960098 [Quercus lobata]1.3e-1738.46Show/hide
Query:  MGEVVRNDRGEVMVAVAKPIQQVLQVEVGEALAIRDGIQWAMELGFRRLEVETDAEIVVKKLANNVIDRSDLGAVLMDIQELATNLECCIFSWCNRRANS
        +G ++RND G VM A  + I     VE+ E LA R  + +A +LGF ++ VE D+EI++K L++N +  S  G +L DI+ ++++L   +F+   R+ N 
Subjt:  MGEVVRNDRGEVMVAVAKPIQQVLQVEVGEALAIRDGIQWAMELGFRRLEVETDAEIVVKKLANNVIDRSDLGAVLMDIQELATNLECCIFSWCNRRANS

Query:  VAHGLARRALEYEDFRCWIEDLPAAAYACY
        VAHGLAR A  + +F+ W+ED+P      Y
Subjt:  VAHGLARRALEYEDFRCWIEDLPAAAYACY

TrEMBL top hitse value%identityAlignment
A0A2N9FY90 RNase H domain-containing protein9.8e-1635.34Show/hide
Query:  MGEVVRNDRGEVMVAVAKPIQQVLQVEVGEALAIRDGIQWAMELGFRRLEVETDAEIVVKKLANNVIDRSDLGAVLMDIQELATNLECCIFSWCNRRANS
        +G ++RN+ G  M+A+++ I       V EALA+R  +  A+E+GF+ + +E D+E+VV++ +      S  G ++ D+Q+LA  ++ C+FS   R+AN 
Subjt:  MGEVVRNDRGEVMVAVAKPIQQVLQVEVGEALAIRDGIQWAMELGFRRLEVETDAEIVVKKLANNVIDRSDLGAVLMDIQELATNLECCIFSWCNRRANS

Query:  VAHGLARRALEYEDFRCWIEDLPAAAYACYERD
        VAH LARRA    D+  W+E +P   ++  + D
Subjt:  VAHGLARRALEYEDFRCWIEDLPAAAYACYERD

A0A3B6MST5 RNase H domain-containing protein2.0e-1336.59Show/hide
Query:  MGEVVRNDRGEVMVAVAKPIQQVLQVEVGEALAIRDGIQWAMELGFRRLEVETDAEIVVKKLANNVIDRSDLGAVLMDIQELATNLECCIFSWCNRRANS
        +G V+RN  G V+ A  + + Q +  E+ EA+A+R  +++A E GF+ + V +D E +V K+ N  +DRS +GA+  DI+  A+    C+F+  NR  N 
Subjt:  MGEVVRNDRGEVMVAVAKPIQQVLQVEVGEALAIRDGIQWAMELGFRRLEVETDAEIVVKKLANNVIDRSDLGAVLMDIQELATNLECCIFSWCNRRANS

Query:  VAHGLARRALEYEDFRCWIEDLP
         AH LAR + E++   CW   +P
Subjt:  VAHGLARRALEYEDFRCWIEDLP

A0A3B6PTX4 RNase H domain-containing protein1.9e-1437.4Show/hide
Query:  MGEVVRNDRGEVMVAVAKPIQQVLQVEVGEALAIRDGIQWAMELGFRRLEVETDAEIVVKKLANNVIDRSDLGAVLMDIQELATNLECCIFSWCNRRANS
        +G V+RN  G V+ A  + + Q +  E+ EA+A+R  +++A E GF+ + V +D E +V K+ N  +DRS +GA+  DI+  A+N   C+F+  NR  N 
Subjt:  MGEVVRNDRGEVMVAVAKPIQQVLQVEVGEALAIRDGIQWAMELGFRRLEVETDAEIVVKKLANNVIDRSDLGAVLMDIQELATNLECCIFSWCNRRANS

Query:  VAHGLARRALEYEDFRCWIEDLP
         AH LAR + E++   CW   +P
Subjt:  VAHGLARRALEYEDFRCWIEDLP

A0A7J8WZ51 RNase H domain-containing protein1.6e-1336.8Show/hide
Query:  GEVVRNDRGEVMVAVAKPIQQVLQVEVGEALAIRDGIQWAMELGFRRLEVETDAEIVVKKLANNVIDRSDLGAVLMDIQELATNLECCIFSWCNRRANSV
        G ++RN++GEVM +       +L V + EA+A   G+ +A E+GF  +EVE DA+IV++K+      R+DL +V+ DI+   ++     F    R AN V
Subjt:  GEVVRNDRGEVMVAVAKPIQQVLQVEVGEALAIRDGIQWAMELGFRRLEVETDAEIVVKKLANNVIDRSDLGAVLMDIQELATNLECCIFSWCNRRANSV

Query:  AHGLARRALEYEDFRCWIEDLPAAA
        AH +A+      +   WIED+PA A
Subjt:  AHGLARRALEYEDFRCWIEDLPAAA

A0A7J9L182 Uncharacterized protein2.0e-1336.8Show/hide
Query:  GEVVRNDRGEVMVAVAKPIQQVLQVEVGEALAIRDGIQWAMELGFRRLEVETDAEIVVKKLANNVIDRSDLGAVLMDIQELATNLECCIFSWCNRRANSV
        G ++RN++GEVM +       +L V + EA+A   G+ +A E+GF  +EVE DA+IV++K+      R+DL +V+ DI+   ++     F    R AN V
Subjt:  GEVVRNDRGEVMVAVAKPIQQVLQVEVGEALAIRDGIQWAMELGFRRLEVETDAEIVVKKLANNVIDRSDLGAVLMDIQELATNLECCIFSWCNRRANSV

Query:  AHGLARRALEYEDFRCWIEDLPAAA
        +H +AR      +   WIED+PA A
Subjt:  AHGLARRALEYEDFRCWIEDLPAAA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGAGAGGTCGTTCGGAATGATCGCGGAGAAGTTATGGTTGCAGTGGCGAAGCCTATACAACAGGTGCTCCAAGTTGAAGTTGGAGAAGCTTTAGCCATTCGTGATGG
GATACAATGGGCTATGGAGCTAGGATTTCGAAGACTAGAGGTGGAAACTGATGCCGAAATTGTGGTTAAAAAACTTGCAAATAATGTAATCGACCGCTCAGACTTAGGTG
CGGTGTTGATGGATATTCAAGAACTTGCAACCAACCTTGAATGTTGCATTTTCTCTTGGTGTAATCGTCGAGCAAACTCTGTGGCACATGGCCTTGCGAGAAGAGCATTG
GAGTACGAAGATTTTCGATGCTGGATTGAAGACCTTCCAGCAGCTGCTTATGCTTGTTACGAAAGAGACAAACTCTCGGTGGCTATTCAACAGCCACTAATTTCAACTTT
ATCTAATTAG
mRNA sequenceShow/hide mRNA sequence
ATGGGAGAGGTCGTTCGGAATGATCGCGGAGAAGTTATGGTTGCAGTGGCGAAGCCTATACAACAGGTGCTCCAAGTTGAAGTTGGAGAAGCTTTAGCCATTCGTGATGG
GATACAATGGGCTATGGAGCTAGGATTTCGAAGACTAGAGGTGGAAACTGATGCCGAAATTGTGGTTAAAAAACTTGCAAATAATGTAATCGACCGCTCAGACTTAGGTG
CGGTGTTGATGGATATTCAAGAACTTGCAACCAACCTTGAATGTTGCATTTTCTCTTGGTGTAATCGTCGAGCAAACTCTGTGGCACATGGCCTTGCGAGAAGAGCATTG
GAGTACGAAGATTTTCGATGCTGGATTGAAGACCTTCCAGCAGCTGCTTATGCTTGTTACGAAAGAGACAAACTCTCGGTGGCTATTCAACAGCCACTAATTTCAACTTT
ATCTAATTAG
Protein sequenceShow/hide protein sequence
MGEVVRNDRGEVMVAVAKPIQQVLQVEVGEALAIRDGIQWAMELGFRRLEVETDAEIVVKKLANNVIDRSDLGAVLMDIQELATNLECCIFSWCNRRANSVAHGLARRAL
EYEDFRCWIEDLPAAAYACYERDKLSVAIQQPLISTLSN