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Sed0002494 (gene) of Chayote v1 genome

Gene IDSed0002494
OrganismSechium edule (Chayote v1)
Descriptionauxin-responsive protein SAUR24-like
Genome locationLG05:44244194..44244772
RNA-Seq ExpressionSed0002494
SyntenySed0002494
Gene Ontology termsGO:0009733 - response to auxin (biological process)
InterPro domainsIPR003676 - Small auxin-up RNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008457626.1 PREDICTED: auxin-responsive protein SAUR24-like [Cucumis melo]6.8e-3888.3Show/hide
Query:  MGFRLPSSLIPQAKQLLRRSS---PAVPKGHVAVYVGEFQRKRFVIPISYLNHLSFQQLLRRAEDEFGFHHPDGGLTIPCREDAFLDLTSRLQS
        MGFRLPSSLIPQAKQLLRRSS    AVPKGHVAVYVGEFQRKRFVIPISYLNHLSFQQLL RAE+EFGF HP+GGLTIPC EDAF+DLTSRLQ+
Subjt:  MGFRLPSSLIPQAKQLLRRSS---PAVPKGHVAVYVGEFQRKRFVIPISYLNHLSFQQLLRRAEDEFGFHHPDGGLTIPCREDAFLDLTSRLQS

XP_022944378.1 auxin-responsive protein SAUR24-like [Cucurbita moschata]2.3e-3888.42Show/hide
Query:  MGFRLPSSLIPQAKQLLRRSS---PAVPKGHVAVYVGEFQRKRFVIPISYLNHLSFQQLLRRAEDEFGFHHPDGGLTIPCREDAFLDLTSRLQSS
        MGFRLPSSLIPQAKQLL+RSS    AVPKGHVAVYVGEFQRKRFVIPISYLNHLSFQQLL RAE+EFGF HP+GGLTIPC EDAF+DLTSRLQSS
Subjt:  MGFRLPSSLIPQAKQLLRRSS---PAVPKGHVAVYVGEFQRKRFVIPISYLNHLSFQQLLRRAEDEFGFHHPDGGLTIPCREDAFLDLTSRLQSS

XP_022947579.1 auxin-responsive protein SAUR24-like [Cucurbita moschata]8.9e-3887.37Show/hide
Query:  MGFRLPSSLIPQAKQLLRRSS---PAVPKGHVAVYVGEFQRKRFVIPISYLNHLSFQQLLRRAEDEFGFHHPDGGLTIPCREDAFLDLTSRLQSS
        MGFRLPSSLIPQAKQLLRRSS    AVPKGHVAVYVGEF+RKRFVIPISYLNH SFQQLL RAE+EFGF HP+GGLTIPC EDAF+DLTSRLQSS
Subjt:  MGFRLPSSLIPQAKQLLRRSS---PAVPKGHVAVYVGEFQRKRFVIPISYLNHLSFQQLLRRAEDEFGFHHPDGGLTIPCREDAFLDLTSRLQSS

XP_022986738.1 auxin-responsive protein SAUR24-like [Cucurbita maxima]4.0e-3887.37Show/hide
Query:  MGFRLPSSLIPQAKQLLRRSS---PAVPKGHVAVYVGEFQRKRFVIPISYLNHLSFQQLLRRAEDEFGFHHPDGGLTIPCREDAFLDLTSRLQSS
        MGFRLPSSLIPQAKQLL+RSS    AVPKGHVAVYVGEFQRKRFVIPI+YLNHLSFQQLL RAE+EFGF HP+GGLTIPC EDAF+DLTSRLQSS
Subjt:  MGFRLPSSLIPQAKQLLRRSS---PAVPKGHVAVYVGEFQRKRFVIPISYLNHLSFQQLLRRAEDEFGFHHPDGGLTIPCREDAFLDLTSRLQSS

XP_023512614.1 auxin-responsive protein SAUR24-like [Cucurbita pepo subsp. pepo]1.8e-3888.42Show/hide
Query:  MGFRLPSSLIPQAKQLLRRSS---PAVPKGHVAVYVGEFQRKRFVIPISYLNHLSFQQLLRRAEDEFGFHHPDGGLTIPCREDAFLDLTSRLQSS
        MGFRLPSSLIPQAKQLL+RSS    AVPKGHVAVYVGEFQRKRFVIPISYLNHLSFQQLL RAE+EFGF HP+GGLTIPC EDAF+DLTSRLQSS
Subjt:  MGFRLPSSLIPQAKQLLRRSS---PAVPKGHVAVYVGEFQRKRFVIPISYLNHLSFQQLLRRAEDEFGFHHPDGGLTIPCREDAFLDLTSRLQSS

TrEMBL top hitse value%identityAlignment
A0A1S3C5H8 auxin-responsive protein SAUR24-like3.3e-3888.3Show/hide
Query:  MGFRLPSSLIPQAKQLLRRSS---PAVPKGHVAVYVGEFQRKRFVIPISYLNHLSFQQLLRRAEDEFGFHHPDGGLTIPCREDAFLDLTSRLQS
        MGFRLPSSLIPQAKQLLRRSS    AVPKGHVAVYVGEFQRKRFVIPISYLNHLSFQQLL RAE+EFGF HP+GGLTIPC EDAF+DLTSRLQ+
Subjt:  MGFRLPSSLIPQAKQLLRRSS---PAVPKGHVAVYVGEFQRKRFVIPISYLNHLSFQQLLRRAEDEFGFHHPDGGLTIPCREDAFLDLTSRLQS

A0A5A7TUZ6 Auxin-responsive protein SAUR24-like3.3e-3888.3Show/hide
Query:  MGFRLPSSLIPQAKQLLRRSS---PAVPKGHVAVYVGEFQRKRFVIPISYLNHLSFQQLLRRAEDEFGFHHPDGGLTIPCREDAFLDLTSRLQS
        MGFRLPSSLIPQAKQLLRRSS    AVPKGHVAVYVGEFQRKRFVIPISYLNHLSFQQLL RAE+EFGF HP+GGLTIPC EDAF+DLTSRLQ+
Subjt:  MGFRLPSSLIPQAKQLLRRSS---PAVPKGHVAVYVGEFQRKRFVIPISYLNHLSFQQLLRRAEDEFGFHHPDGGLTIPCREDAFLDLTSRLQS

A0A6J1FY01 auxin-responsive protein SAUR24-like1.1e-3888.42Show/hide
Query:  MGFRLPSSLIPQAKQLLRRSS---PAVPKGHVAVYVGEFQRKRFVIPISYLNHLSFQQLLRRAEDEFGFHHPDGGLTIPCREDAFLDLTSRLQSS
        MGFRLPSSLIPQAKQLL+RSS    AVPKGHVAVYVGEFQRKRFVIPISYLNHLSFQQLL RAE+EFGF HP+GGLTIPC EDAF+DLTSRLQSS
Subjt:  MGFRLPSSLIPQAKQLLRRSS---PAVPKGHVAVYVGEFQRKRFVIPISYLNHLSFQQLLRRAEDEFGFHHPDGGLTIPCREDAFLDLTSRLQSS

A0A6J1G776 auxin-responsive protein SAUR24-like4.3e-3887.37Show/hide
Query:  MGFRLPSSLIPQAKQLLRRSS---PAVPKGHVAVYVGEFQRKRFVIPISYLNHLSFQQLLRRAEDEFGFHHPDGGLTIPCREDAFLDLTSRLQSS
        MGFRLPSSLIPQAKQLLRRSS    AVPKGHVAVYVGEF+RKRFVIPISYLNH SFQQLL RAE+EFGF HP+GGLTIPC EDAF+DLTSRLQSS
Subjt:  MGFRLPSSLIPQAKQLLRRSS---PAVPKGHVAVYVGEFQRKRFVIPISYLNHLSFQQLLRRAEDEFGFHHPDGGLTIPCREDAFLDLTSRLQSS

A0A6J1JHE8 auxin-responsive protein SAUR24-like1.9e-3887.37Show/hide
Query:  MGFRLPSSLIPQAKQLLRRSS---PAVPKGHVAVYVGEFQRKRFVIPISYLNHLSFQQLLRRAEDEFGFHHPDGGLTIPCREDAFLDLTSRLQSS
        MGFRLPSSLIPQAKQLL+RSS    AVPKGHVAVYVGEFQRKRFVIPI+YLNHLSFQQLL RAE+EFGF HP+GGLTIPC EDAF+DLTSRLQSS
Subjt:  MGFRLPSSLIPQAKQLLRRSS---PAVPKGHVAVYVGEFQRKRFVIPISYLNHLSFQQLLRRAEDEFGFHHPDGGLTIPCREDAFLDLTSRLQSS

SwissProt top hitse value%identityAlignment
Q9FJF6 Auxin-responsive protein SAUR231.9e-2262.5Show/hide
Query:  AKQLLRRSSPAV---PKGHVAVYVGEFQRKRFVIPISYLNHLSFQQLLRRAEDEFGFHHPDGGLTIPCREDAFLDLTSRL
        AK++L RS+ AV   PKG +AVYVGE Q+KR+++P+SYLN  SFQ LL ++E+EFGF HP GGLTIPC ED F+++TSRL
Subjt:  AKQLLRRSSPAV---PKGHVAVYVGEFQRKRFVIPISYLNHLSFQQLLRRAEDEFGFHHPDGGLTIPCREDAFLDLTSRL

Q9FJF7 Auxin-responsive protein SAUR229.9e-2464.2Show/hide
Query:  AKQLLRRSSPAV---PKGHVAVYVGEFQRKRFVIPISYLNHLSFQQLLRRAEDEFGFHHPDGGLTIPCREDAFLDLTSRLQ
        AK++L RS+ AV   PKG +AVYVGE Q+KR+++P+SYLN  SFQ LL ++EDEFGF HP GGLTIPC ED F+++TSRLQ
Subjt:  AKQLLRRSSPAV---PKGHVAVYVGEFQRKRFVIPISYLNHLSFQQLLRRAEDEFGFHHPDGGLTIPCREDAFLDLTSRLQ

Q9FJF9 Auxin-responsive protein SAUR211.4e-2258.14Show/hide
Query:  LPSSLIPQAKQLLRRSSPAVPKGHVAVYVGEFQRKRFVIPISYLNHLSFQQLLRRAEDEFGFHHPDGGLTIPCREDAFLDLTSRLQ
        L  SL+   K L R ++ A PKG +AVYVGE Q+KR+++P+SYL+  SFQ LL ++E+EFGF HP GGLTIPC ED F+++TSRLQ
Subjt:  LPSSLIPQAKQLLRRSSPAVPKGHVAVYVGEFQRKRFVIPISYLNHLSFQQLLRRAEDEFGFHHPDGGLTIPCREDAFLDLTSRLQ

Q9FJG0 Auxin-responsive protein SAUR202.5e-2261.73Show/hide
Query:  AKQLLRRS---SPAVPKGHVAVYVGEFQRKRFVIPISYLNHLSFQQLLRRAEDEFGFHHPDGGLTIPCREDAFLDLTSRLQ
        AK++L RS   + A PKG +AVYVGE Q+KR+++PISYLN  SFQ LL ++E+EFGF HP GGLTIPC ED F+++TSR Q
Subjt:  AKQLLRRS---SPAVPKGHVAVYVGEFQRKRFVIPISYLNHLSFQQLLRRAEDEFGFHHPDGGLTIPCREDAFLDLTSRLQ

Q9FK62 Auxin-responsive protein SAUR241.1e-2261.73Show/hide
Query:  AKQLLRRSS---PAVPKGHVAVYVGEFQRKRFVIPISYLNHLSFQQLLRRAEDEFGFHHPDGGLTIPCREDAFLDLTSRLQ
        AK++L RS+    A PKG +AVYVGE Q+KR+++P+SYLN  SFQ LL ++E+EFGF HP GGLTIPC ED F+++TSRLQ
Subjt:  AKQLLRRSS---PAVPKGHVAVYVGEFQRKRFVIPISYLNHLSFQQLLRRAEDEFGFHHPDGGLTIPCREDAFLDLTSRLQ

Arabidopsis top hitse value%identityAlignment
AT2G21210.1 SAUR-like auxin-responsive protein family1.2e-2456.52Show/hide
Query:  SSLIPQAKQLLR-----RSSPAVPKGHVAVYVGE-FQRKRFVIPISYLNHLSFQQLLRRAEDEFGFHHPDGGLTIPCREDAFLDLTSRLQSS
        S ++  +KQLL+      ++ A+PKGH+AVYVGE  Q++RFV+P++YL+H  FQ+LLR+AE+EFGF HP GGLTIPC E  F+DL SRL +S
Subjt:  SSLIPQAKQLLR-----RSSPAVPKGHVAVYVGE-FQRKRFVIPISYLNHLSFQQLLRRAEDEFGFHHPDGGLTIPCREDAFLDLTSRLQSS

AT4G34810.1 SAUR-like auxin-responsive protein family4.6e-2470.67Show/hide
Query:  SSPAVPKGHVAVYVG---EFQRKRFVIPISYLNHLSFQQLLRRAEDEFGFHHPDGGLTIPCREDAFLDL-TSRLQ
        SS  VPKGHVAVYVG   E ++KRFV+PIS+LNH SF++ L RAE+EFGF+HP GGLTIPCRE+ FLDL  SRLQ
Subjt:  SSPAVPKGHVAVYVG---EFQRKRFVIPISYLNHLSFQQLLRRAEDEFGFHHPDGGLTIPCREDAFLDL-TSRLQ

AT5G18030.1 SAUR-like auxin-responsive protein family1.0e-2358.14Show/hide
Query:  LPSSLIPQAKQLLRRSSPAVPKGHVAVYVGEFQRKRFVIPISYLNHLSFQQLLRRAEDEFGFHHPDGGLTIPCREDAFLDLTSRLQ
        L  SL+   K L R ++ A PKG +AVYVGE Q+KR+++P+SYL+  SFQ LL ++E+EFGF HP GGLTIPC ED F+++TSRLQ
Subjt:  LPSSLIPQAKQLLRRSSPAVPKGHVAVYVGEFQRKRFVIPISYLNHLSFQQLLRRAEDEFGFHHPDGGLTIPCREDAFLDLTSRLQ

AT5G18050.1 SAUR-like auxin-responsive protein family7.1e-2564.2Show/hide
Query:  AKQLLRRSSPAV---PKGHVAVYVGEFQRKRFVIPISYLNHLSFQQLLRRAEDEFGFHHPDGGLTIPCREDAFLDLTSRLQ
        AK++L RS+ AV   PKG +AVYVGE Q+KR+++P+SYLN  SFQ LL ++EDEFGF HP GGLTIPC ED F+++TSRLQ
Subjt:  AKQLLRRSSPAV---PKGHVAVYVGEFQRKRFVIPISYLNHLSFQQLLRRAEDEFGFHHPDGGLTIPCREDAFLDLTSRLQ

AT5G18080.1 SAUR-like auxin-responsive protein family7.8e-2461.73Show/hide
Query:  AKQLLRRSS---PAVPKGHVAVYVGEFQRKRFVIPISYLNHLSFQQLLRRAEDEFGFHHPDGGLTIPCREDAFLDLTSRLQ
        AK++L RS+    A PKG +AVYVGE Q+KR+++P+SYLN  SFQ LL ++E+EFGF HP GGLTIPC ED F+++TSRLQ
Subjt:  AKQLLRRSS---PAVPKGHVAVYVGEFQRKRFVIPISYLNHLSFQQLLRRAEDEFGFHHPDGGLTIPCREDAFLDLTSRLQ


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGGTTCCGTCTTCCATCGTCGTTGATCCCTCAGGCCAAGCAATTGCTGAGAAGAAGCTCGCCGGCCGTGCCGAAAGGCCACGTCGCCGTCTACGTCGGCGAGTTCCA
GAGGAAGCGATTCGTGATTCCGATCTCCTACCTCAACCATCTCTCCTTTCAACAGCTTCTCCGGCGAGCCGAGGACGAGTTCGGATTTCATCATCCCGACGGCGGTTTGA
CCATTCCCTGCCGAGAAGATGCGTTTCTCGATCTCACTTCTCGATTGCAGTCCTCTTAA
mRNA sequenceShow/hide mRNA sequence
ATTCTTCCACTTTTTCTTCGATAAATTCGAAGCTACATTTCGCCATTTCCATTTCCTTTCTCTCCTGAACCATGGGGTTCCGTCTTCCATCGTCGTTGATCCCTCAGGCC
AAGCAATTGCTGAGAAGAAGCTCGCCGGCCGTGCCGAAAGGCCACGTCGCCGTCTACGTCGGCGAGTTCCAGAGGAAGCGATTCGTGATTCCGATCTCCTACCTCAACCA
TCTCTCCTTTCAACAGCTTCTCCGGCGAGCCGAGGACGAGTTCGGATTTCATCATCCCGACGGCGGTTTGACCATTCCCTGCCGAGAAGATGCGTTTCTCGATCTCACTT
CTCGATTGCAGTCCTCTTAATTTCCTTCATTTTTCCCTCTTTTTTCTGTGTTGGTGCTGATTTTTGCGTTCTGACCTAGGTTGGAATGTTGATGGAACCCAATTACTCTG
CCCTTTGGGGGTGTAATGAGCGGTGTTTCGAATCCTCATGTTTTCACCAAAAGTGTTCATCATAATGCAAATACAACTTTTTCTACATCGCTTTCTTGTTTAATTTATGC
TCTGATCAACCAATTTCGATTTTATTCGC
Protein sequenceShow/hide protein sequence
MGFRLPSSLIPQAKQLLRRSSPAVPKGHVAVYVGEFQRKRFVIPISYLNHLSFQQLLRRAEDEFGFHHPDGGLTIPCREDAFLDLTSRLQSS