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Sed0002495 (gene) of Chayote v1 genome

Gene IDSed0002495
OrganismSechium edule (Chayote v1)
DescriptionSWIM-type domain-containing protein
Genome locationLG10:9018439..9027605
RNA-Seq ExpressionSed0002495
SyntenySed0002495
Gene Ontology termsGO:0005488 - binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_014495097.1 uncharacterized protein LOC106757029 [Vigna radiata var. radiata]1.4e-3245.71Show/hide
Query:  MNTIKNVDEGAYSWLFAIPPQLWCKHAFSSFPKCDITLNNMCEAFNSTILEARDKPIIGMIELIIFYLMRRFQANKQKMKNVKGKICPRVQKKLEENKKE
        M  +K ++  AY+WL AIP + WCKHAFS++P+CD+ +NN+ E+FNSTIL ARDKPII M+E I  Y+M RF   ++K     G + P+ +K+L+   ++
Subjt:  MNTIKNVDEGAYSWLFAIPPQLWCKHAFSSFPKCDITLNNMCEAFNSTILEARDKPIIGMIELIIFYLMRRFQANKQKMKNVKGKICPRVQKKLEENKKE

Query:  SGSWFSTWFGDEKFEVSKG-SNEAYIVDLAKITCSCCYWE
        SG+W   W G  KFEV+ G + E ++VD++  +CSC +W+
Subjt:  SGSWFSTWFGDEKFEVSKG-SNEAYIVDLAKITCSCCYWE
XP_017419721.1 PREDICTED: uncharacterized protein LOC108329871 [Vigna angularis]6.2e-3348.57Show/hide
Query:  MNTIKNVDEGAYSWLFAIPPQLWCKHAFSSFPKCDITLNNMCEAFNSTILEARDKPIIGMIELIIFYLMRRFQANKQKMKNVKGKICPRVQKKLEENKKE
        M  +  V+  AY+WL AIP   WCKHAFSS+P+CD+ LNN+ E+FNSTIL ARDKPII M+E I  Y+MRRF + ++K K   G + P+ + +L+   ++
Subjt:  MNTIKNVDEGAYSWLFAIPPQLWCKHAFSSFPKCDITLNNMCEAFNSTILEARDKPIIGMIELIIFYLMRRFQANKQKMKNVKGKICPRVQKKLEENKKE

Query:  SGSWFSTWFGDEKFEVSKG-SNEAYIVDLAKITCSCCYWE
        SG+W  TW G  KFEV+ G + + ++VDL+  +CSC +W+
Subjt:  SGSWFSTWFGDEKFEVSKG-SNEAYIVDLAKITCSCCYWE
XP_027905892.1 uncharacterized protein LOC114165477 [Vigna unguiculata]7.3e-3447.86Show/hide
Query:  MNTIKNVDEGAYSWLFAIPPQLWCKHAFSSFPKCDITLNNMCEAFNSTILEARDKPIIGMIELIIFYLMRRFQANKQKMKNVKGKICPRVQKKLEENKKE
        M  ++N++  AY+WL AIP   WCKHAFS +P+CD+ +NN+ E+FNSTIL ARDKPII M+E I  Y M RF   ++K+    G + P+ QK+L+   ++
Subjt:  MNTIKNVDEGAYSWLFAIPPQLWCKHAFSSFPKCDITLNNMCEAFNSTILEARDKPIIGMIELIIFYLMRRFQANKQKMKNVKGKICPRVQKKLEENKKE

Query:  SGSWFSTWFGDEKFEVSKG-SNEAYIVDLAKITCSCCYWE
        SG+W   W G  KFEV++G + E ++VDL+K TC+C +W+
Subjt:  SGSWFSTWFGDEKFEVSKG-SNEAYIVDLAKITCSCCYWE
XP_027935630.1 uncharacterized protein LOC114190789 [Vigna unguiculata]1.4e-3245.71Show/hide
Query:  MNTIKNVDEGAYSWLFAIPPQLWCKHAFSSFPKCDITLNNMCEAFNSTILEARDKPIIGMIELIIFYLMRRFQANKQKMKNVKGKICPRVQKKLEENKKE
        M  +K +++ A++WL  IP + WCKHAFSS+PKCD+ +NN+ E+FNSTIL ARDKPI+ M+E I  YLM RF   ++K+   +G + P+ + +L    + 
Subjt:  MNTIKNVDEGAYSWLFAIPPQLWCKHAFSSFPKCDITLNNMCEAFNSTILEARDKPIIGMIELIIFYLMRRFQANKQKMKNVKGKICPRVQKKLEENKKE

Query:  SGSWFSTWFGDEKFEVSKG-SNEAYIVDLAKITCSCCYWE
        SG+W   W G +KFEV++G + E ++VDL +++C+C +WE
Subjt:  SGSWFSTWFGDEKFEVSKG-SNEAYIVDLAKITCSCCYWE
XP_027939944.1 uncharacterized protein LOC114194090 [Vigna unguiculata]6.2e-3348.57Show/hide
Query:  MNTIKNVDEGAYSWLFAIPPQLWCKHAFSSFPKCDITLNNMCEAFNSTILEARDKPIIGMIELIIFYLMRRFQANKQKMKNVKGKICPRVQKKLEENKKE
        M  +K ++  AY WL AIP Q WCKHAFS +P+CD+ +NN+ E+FNSTIL ARDKPI+ M+E I  YLM RF   ++K     G + P+  K+L+   ++
Subjt:  MNTIKNVDEGAYSWLFAIPPQLWCKHAFSSFPKCDITLNNMCEAFNSTILEARDKPIIGMIELIIFYLMRRFQANKQKMKNVKGKICPRVQKKLEENKKE

Query:  SGSWFSTWFGDEKFEVSKG-SNEAYIVDLAKITCSCCYWE
        SG+W + W GD  FEV++G + E ++VDLA   CSC +WE
Subjt:  SGSWFSTWFGDEKFEVSKG-SNEAYIVDLAKITCSCCYWE
TrEMBL top hitse value%identityAlignment
A0A1S3TFL2 uncharacterized protein LOC1067549916.6e-3345.71Show/hide
Query:  MNTIKNVDEGAYSWLFAIPPQLWCKHAFSSFPKCDITLNNMCEAFNSTILEARDKPIIGMIELIIFYLMRRFQANKQKMKNVKGKICPRVQKKLEENKKE
        M+ +KNV+  A++WL +IP ++WCKHAFS++ +CD+ +NN+ E+FNSTIL ARDKPII M+E I  Y+M RF + ++K+    G + P+ +K+L++  ++
Subjt:  MNTIKNVDEGAYSWLFAIPPQLWCKHAFSSFPKCDITLNNMCEAFNSTILEARDKPIIGMIELIIFYLMRRFQANKQKMKNVKGKICPRVQKKLEENKKE

Query:  SGSWFSTWFGDEKFEVSKG-SNEAYIVDLAKITCSCCYWE
        SG+W   W G  KFEV+ G + + +IVDL+  TC+C +W+
Subjt:  SGSWFSTWFGDEKFEVSKG-SNEAYIVDLAKITCSCCYWE
A0A1S3TMW4 uncharacterized protein LOC1067570296.6e-3345.71Show/hide
Query:  MNTIKNVDEGAYSWLFAIPPQLWCKHAFSSFPKCDITLNNMCEAFNSTILEARDKPIIGMIELIIFYLMRRFQANKQKMKNVKGKICPRVQKKLEENKKE
        M  +K ++  AY+WL AIP + WCKHAFS++P+CD+ +NN+ E+FNSTIL ARDKPII M+E I  Y+M RF   ++K     G + P+ +K+L+   ++
Subjt:  MNTIKNVDEGAYSWLFAIPPQLWCKHAFSSFPKCDITLNNMCEAFNSTILEARDKPIIGMIELIIFYLMRRFQANKQKMKNVKGKICPRVQKKLEENKKE

Query:  SGSWFSTWFGDEKFEVSKG-SNEAYIVDLAKITCSCCYWE
        SG+W   W G  KFEV+ G + E ++VD++  +CSC +W+
Subjt:  SGSWFSTWFGDEKFEVSKG-SNEAYIVDLAKITCSCCYWE
A0A1S3U0L5 uncharacterized protein LOC1067606513.3e-3244.29Show/hide
Query:  MNTIKNVDEGAYSWLFAIPPQLWCKHAFSSFPKCDITLNNMCEAFNSTILEARDKPIIGMIELIIFYLMRRFQANKQKMKNVKGKICPRVQKKLEENKKE
        M  +K ++  AY+WL A+P + WCKHAFS++P+CD+ +NN+ E+FNSTIL ARDKPII M+E I  Y+M RF   ++K     G + P+ +K+L+   ++
Subjt:  MNTIKNVDEGAYSWLFAIPPQLWCKHAFSSFPKCDITLNNMCEAFNSTILEARDKPIIGMIELIIFYLMRRFQANKQKMKNVKGKICPRVQKKLEENKKE

Query:  SGSWFSTWFGDEKFEVSKG-SNEAYIVDLAKITCSCCYWE
        SG+W   W G  KFEV+ G + + ++VD++  +CSC +W+
Subjt:  SGSWFSTWFGDEKFEVSKG-SNEAYIVDLAKITCSCCYWE
A0A1S3VGC9 uncharacterized protein LOC1067747484.3e-3244.29Show/hide
Query:  MNTIKNVDEGAYSWLFAIPPQLWCKHAFSSFPKCDITLNNMCEAFNSTILEARDKPIIGMIELIIFYLMRRFQANKQKMKNVKGKICPRVQKKLEENKKE
        M  +KN++  A++WL  IP + WCKHAFS++P+CD+ +NN+ E+FNSTIL ARDKPII M+E I  YLM+RF + ++K+ +  G + P+ +K+L++  ++
Subjt:  MNTIKNVDEGAYSWLFAIPPQLWCKHAFSSFPKCDITLNNMCEAFNSTILEARDKPIIGMIELIIFYLMRRFQANKQKMKNVKGKICPRVQKKLEENKKE

Query:  SGSWFSTWFGDEKFEVSKG-SNEAYIVDLAKITCSCCYWE
        SG+W   W G  +FE + G + + ++VDL+  TC+C  W+
Subjt:  SGSWFSTWFGDEKFEVSKG-SNEAYIVDLAKITCSCCYWE
A0A1S3VWV3 uncharacterized protein LOC1067791311.5e-3245Show/hide
Query:  MNTIKNVDEGAYSWLFAIPPQLWCKHAFSSFPKCDITLNNMCEAFNSTILEARDKPIIGMIELIIFYLMRRFQANKQKMKNVKGKICPRVQKKLEENKKE
        M  +KN++  A++WL  IP + WCKHAFS++P+CD+ +NN+ E+FNSTIL ARDKPII M+E I  YLM+RF + ++K+ +  G + P+ +K+L++  ++
Subjt:  MNTIKNVDEGAYSWLFAIPPQLWCKHAFSSFPKCDITLNNMCEAFNSTILEARDKPIIGMIELIIFYLMRRFQANKQKMKNVKGKICPRVQKKLEENKKE

Query:  SGSWFSTWFGDEKFEVSKG-SNEAYIVDLAKITCSCCYWE
        SG+W   W G  +FEV+ G + + ++VDL+  TC+C  W+
Subjt:  SGSWFSTWFGDEKFEVSKG-SNEAYIVDLAKITCSCCYWE
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAACACAATTAAAAATGTAGATGAAGGAGCTTATAGTTGGCTATTTGCAATCCCTCCTCAATTGTGGTGTAAGCATGCGTTTAGTAGCTTCCCTAAATGTGACATCAC
CTTGAACAACATGTGTGAAGCTTTCAATTCCACAATACTAGAAGCAAGAGATAAACCAATTATTGGGATGATTGAATTGATTATATTTTACCTCATGAGAAGATTCCAAG
CAAATAAACAAAAGATGAAGAATGTTAAAGGAAAAATATGTCCGAGGGTTCAGAAAAAATTGGAAGAGAATAAGAAAGAAAGTGGAAGTTGGTTTTCTACTTGGTTTGGA
GATGAAAAGTTTGAGGTTAGCAAAGGTAGTAACGAGGCATATATAGTGGACTTGGCTAAGATAACATGTTCTTGTTGTTATTGGGAGGGAGTTAACTGGACTCCCATGTG
A
mRNA sequenceShow/hide mRNA sequence
TTCACTCTCAAAATAGGGTCAAATATCCCAAGGCATTTTCACGATTTCTTCCTAATGTTTTGAGCAGAGATTGTGGAAGAAGAAGACGCTGGTAACCAAGTTGCGAGACA
GGATGGCTGAAGGAGGAGGAGCTGTGATCATGGGGCCCATCTTTCCAACTCTGATTTTTGTATTATGACTCTTTATGTTTTGTTTCCCACAGATGCATGTAGCGGGACAC
GAGCCCTAGGATGTTTTGTAAATGTTTTGTGGATTCCAGCATTTTGTATCTGAACAGGTTTTGAATGGTTTTTAGAAAATCTCTTATCAGAGTAAACTTTGGAAATGTAT
TTATCTTGGAACAGGTGCTTGGAAACAGGGACAGGTTCCAGGGAAATTGTCTAGTTTTTAAAGGGGTTATTTTGAATGTTTTGTTTTATTTGGAATCCGAAATCATGTCT
GTTTAAATGTCCTTTACTTTGAATGCATGCATTGGGGTAAGGGCCCATTTAGTGCCCCATTCGGGTCGGTCCCTTACACTAAAATGAAGAATGAGAATACTTTTCAATTA
AGAACTTTGGTTGATAAACATACTTGCACCCGATCATTTACGAATAGATGGGCAACTTCTAATTGGTTGGCTAATAAGCTAGTCAATAGAGTCAAAGAGCAACCTAACAT
AAAAGTGAACACAATTCACGAAAAAATTCAACGTAAGTATATTGTCAAGATATCAAGAAATAAGGCTTATAGAGCAAAGAGAAAAGCTATGGACATAATTGAAGGGAGTC
ATGCTAAACAATATGGAAAACTGTGGAACTACTGTGGTGAGCTATTACGATGTAATAACGGTAGTAGTGTTAAACTACGTGTGGTGCATTTGATTCTTTGGTAGTAGGTG
AAGAATGTCCAAGTCATCTACTGTGTTTGAAAGAATATACATATGTTTTGATGCAATGAAAAAAGGCTTCTTGGCAGAGTGTACGCCATTTATTGGATTGGATGGATGTC
ATTTAAAAGGGTCATATGGGGGCCAACTTTTATGTGCAGTGGCAAGGAATCCAAACAATCAAATATATCCTCTAGCATTTGCAGTGTTTGAGGTAGAATGCAATTCTTCG
TGGATGTGGTTTCTAAGTAATTTGTTGGTCGATATCGAAGATATAAATGAGCATAAATGGATCTTTATAAGTGATCGACAAAAGGGGTTGATCCAAACATTTGAGGAATT
ATTGCCAGGTGTAGAGCATCGATTTTGTGTCTGACACTTATACAACAATATGCGAAAAGTACCCAGGAAAACAACTAAAAGATTTTATGTGGAATGCTTCAAATGCTACC
ATGACAAGGATGGGTTAAGATAATGAACACAATTAAAAATGTAGATGAAGGAGCTTATAGTTGGCTATTTGCAATCCCTCCTCAATTGTGGTGTAAGCATGCGTTTAGTA
GCTTCCCTAAATGTGACATCACCTTGAACAACATGTGTGAAGCTTTCAATTCCACAATACTAGAAGCAAGAGATAAACCAATTATTGGGATGATTGAATTGATTATATTT
TACCTCATGAGAAGATTCCAAGCAAATAAACAAAAGATGAAGAATGTTAAAGGAAAAATATGTCCGAGGGTTCAGAAAAAATTGGAAGAGAATAAGAAAGAAAGTGGAAG
TTGGTTTTCTACTTGGTTTGGAGATGAAAAGTTTGAGGTTAGCAAAGGTAGTAACGAGGCATATATAGTGGACTTGGCTAAGATAACATGTTCTTGTTGTTATTGGGAGG
GAGTTAACTGGACTCCCATGTGAGCATGCTATTAGTTCCATATTCTACAATTTTAGTTTAGTTGAAGATTATGTGGATGATTGCTACTCCATAGCCACGTACGAAAAAGT
TTATGCTCCCATGATCCATCCCATAAATGGTGAAAACTTATGGTCACACAAGGATTATAACACAATTATCCCTCCAATTAAAAGAAGACAACCTGGACGATCGAAGAAAT
TGCGACGAAGAGAGCCAGATGAGAAAATATCACATACTAAATTGAGCAGACAAAATATTTCTATGACATGCTCTATTTGCCAAAAAATTGGGCATAACAAGAGAAGTTGG
AAAAGAAAGGGCACTTTAATGCAAAGTGGTGGAGGACAAACATCTAAAAAATTGACAACCCCAAGCTGAGGCCAAAGTCAAAGTATACAAATTAGAGACTCACAAGAATT
AGGCAGTGGACAAATTCATTTATTGTTTGAAAAACTTGCTTGTCTTCCATCAAAAGCTTCAGCTGGGATTTCGATGAATAATATGTCAGATAGGAAGAGGGAGAAACTGC
CAATAAGAGGAAAATTAAAGAAGAAAGTTAACAGTCTTCCTTTGTTGTCCAAAACTTGTTATCAGTTTTGGACAACAACCAAAGAAAAAATTTCATCCCCAGTGATCCAA
AAACCATGAACAAGCAGTCAAAGAAATGATAGATTGCTCCACTTGTTCATTTTTTTTTGTAAAAAATAGGCATAATGATTTTTTGTGTTTATAAGCTCAGATTAGAATGT
GTGCATGAACTAAAATGATTGAGTT
Protein sequenceShow/hide protein sequence
MNTIKNVDEGAYSWLFAIPPQLWCKHAFSSFPKCDITLNNMCEAFNSTILEARDKPIIGMIELIIFYLMRRFQANKQKMKNVKGKICPRVQKKLEENKKESGSWFSTWFG
DEKFEVSKGSNEAYIVDLAKITCSCCYWEGVNWTPM