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Sed0002509 (gene) of Chayote v1 genome

Gene IDSed0002509
OrganismSechium edule (Chayote v1)
DescriptionRING-type domain-containing protein
Genome locationLG13:10830371..10834631
RNA-Seq ExpressionSed0002509
SyntenySed0002509
Gene Ontology termsGO:0016740 - transferase activity (molecular function)
InterPro domainsIPR001841 - Zinc finger, RING-type
IPR013083 - Zinc finger, RING/FYVE/PHD-type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6577374.1 RING-H2 finger protein ATL8, partial [Cucurbita argyrosperma subsp. sororia]3.8e-2653.54Show/hide
Query:  MPIIVIFGFLLTIIVLISFFGLCIYICFQCYNHEFIDAHRISREN--------RQTATIVDVEELNRKTQMAMEKLMKPSIDYDCAEDDKVRLKLSECVI
        M IIVIFG  L I+V+++FF LC+YICFQCYNH F +   I  E+        R T+  VD  E+NR  Q+AMEKL KPS +YD  +D++    LS+C I
Subjt:  MPIIVIFGFLLTIIVLISFFGLCIYICFQCYNHEFIDAHRISREN--------RQTATIVDVEELNRKTQMAMEKLMKPSIDYDCAEDDKVRLKLSECVI

Query:  CLEEFGDKVSCRVFPNCKHMFHMQCIL
        CLEEF +   CRVFPNCKHMFH  CI+
Subjt:  CLEEFGDKVSCRVFPNCKHMFHMQCIL

KAG6600728.1 putative RING-H2 finger protein ATL19, partial [Cucurbita argyrosperma subsp. sororia]4.1e-2855.04Show/hide
Query:  MPIIVIFGFLLTIIVLISFFGLCIYICFQCYNHEFIDAHRISREN--------RQTATIVDVEELNRKTQMAMEKLMKPSIDYDCAEDD--KVRLKLSEC
        MPIIV+FGF+LT++VL SFF LCIYICFQC+   FI A +  R+N           A  V+ EELN +T   MEKL  P +DY C E+D      +L+EC
Subjt:  MPIIVIFGFLLTIIVLISFFGLCIYICFQCYNHEFIDAHRISREN--------RQTATIVDVEELNRKTQMAMEKLMKPSIDYDCAEDD--KVRLKLSEC

Query:  VICLEEFGDKVSCRVFPNCKHMFHMQCIL
         ICLE FG++VSCRVFPNCKHMFH  CI+
Subjt:  VICLEEFGDKVSCRVFPNCKHMFHMQCIL

KAG7031368.1 RING-H2 finger protein ATL52, partial [Cucurbita argyrosperma subsp. argyrosperma]4.1e-2855.04Show/hide
Query:  MPIIVIFGFLLTIIVLISFFGLCIYICFQCYNHEFIDAHRISREN--------RQTATIVDVEELNRKTQMAMEKLMKPSIDYDCAEDD--KVRLKLSEC
        MPIIV+FGF+LT++VL SFF LCIYICFQC+   FI A +  R+N           A  V+ EELN +T   MEKL  P +DY C E+D      +L+EC
Subjt:  MPIIVIFGFLLTIIVLISFFGLCIYICFQCYNHEFIDAHRISREN--------RQTATIVDVEELNRKTQMAMEKLMKPSIDYDCAEDD--KVRLKLSEC

Query:  VICLEEFGDKVSCRVFPNCKHMFHMQCIL
         ICLE FG++VSCRVFPNCKHMFH  CI+
Subjt:  VICLEEFGDKVSCRVFPNCKHMFHMQCIL

XP_011652743.1 uncharacterized protein LOC105435076 [Cucumis sativus]2.5e-1760.27Show/hide
Query:  TATIVDVEELNRKTQMAMEKLMKPSIDYDCAEDDKVRLKLSECVICLEEFGDKVSCRVFPNCKHMFHMQCILD
        T  + D EE NR+ QMAMEKL KPS  Y+C E+D+    LSEC ICLE+ G++VSCRVFPNCKH+FH  CI++
Subjt:  TATIVDVEELNRKTQMAMEKLMKPSIDYDCAEDDKVRLKLSECVICLEEFGDKVSCRVFPNCKHMFHMQCILD

XP_023545744.1 RING-H2 finger protein ATL52-like [Cucurbita pepo subsp. pepo]4.4e-1449.41Show/hide
Query:  DAHRISRENRQTATIVDVEELNRKTQMAMEKLMKPSIDYDCAEDD--KVRLKLSECVICLEEFGDKVSCRVFPNCKHMFHMQCIL
        + H ++         V+ EELN +   AMEKL  P +DY C E+D      +L+EC ICLE FG++VSCRVFPNCKHMFH  CI+
Subjt:  DAHRISRENRQTATIVDVEELNRKTQMAMEKLMKPSIDYDCAEDD--KVRLKLSECVICLEEFGDKVSCRVFPNCKHMFHMQCIL

TrEMBL top hitse value%identityAlignment
A0A0A0L7Y8 RING-type domain-containing protein8.6e-1663.08Show/hide
Query:  ELNRKTQMAMEKLMKPSIDYDCAEDDKVRLKLSECVICLEEFGDKVSCRVFPNCKHMFHMQCILD
        E NR+ QMAMEKL KPS  Y+C E+D+    LSEC ICLE+ G++VSCRVFPNCKH+FH  CI++
Subjt:  ELNRKTQMAMEKLMKPSIDYDCAEDDKVRLKLSECVICLEEFGDKVSCRVFPNCKHMFHMQCILD

A0A5D2TCP0 RING-type E3 ubiquitin transferase3.6e-0635.23Show/hide
Query:  HEFIDAHRISRENRQTATIVDVEELNRKTQMAMEKLMKPSIDYDCA--EDDKVRLKLSECVICLEEFGDKVSCRVFPNCKHMFHMQCI
        H   D H+       ++ +V      + +Q  ++K ++P         E++K+ L+ SECVICLEEF     CRV PNCKH +H  CI
Subjt:  HEFIDAHRISRENRQTATIVDVEELNRKTQMAMEKLMKPSIDYDCA--EDDKVRLKLSECVICLEEFGDKVSCRVFPNCKHMFHMQCI

A0A5N5I0S3 RING-H2 finger protein ATL64-like1.2e-0433.04Show/hide
Query:  GFLLTIIVLISFFGLCIYICFQCYNHEFIDAHRISRENRQTATIVDVEELNRKTQMAMEKL-MKPSIDYDCAEDDKVRLKLSECVICLEEFGDKVSCRVF
        G  + I V++ F G+ + +      H  I     +R N Q   +V    +    +M+ E+L M P  DY  AE+        +C +CLE F     CR+ 
Subjt:  GFLLTIIVLISFFGLCIYICFQCYNHEFIDAHRISRENRQTATIVDVEELNRKTQMAMEKL-MKPSIDYDCAEDDKVRLKLSECVICLEEFGDKVSCRVF

Query:  PNCKHMFHMQCI
        PNCKH FH QCI
Subjt:  PNCKHMFHMQCI

A0A7J8VQV2 RING-type E3 ubiquitin transferase (Fragment)1.4e-0534.52Show/hide
Query:  DAHRISRENRQTATIVDVEELNRKTQMAMEKLMKPSIDYDCA--EDDKVRLKLSECVICLEEFGDKVSCRVFPNCKHMFHMQCI
        D H+  +    ++ +V      + +Q  ++K ++P         E++K+  + SECVICLEEF     CRV PNCKH +H  CI
Subjt:  DAHRISRENRQTATIVDVEELNRKTQMAMEKLMKPSIDYDCA--EDDKVRLKLSECVICLEEFGDKVSCRVFPNCKHMFHMQCI

A0A7J9IC66 RING-type domain-containing protein2.8e-0656.14Show/hide
Query:  QMAMEKLMKPSIDYDCAEDDKVRLKLSECVICLEEFGDKVSCRVFPNCKHMFHMQCI
        Q A+EKL+ P I Y     DK  LK SEC ICL+++    SCRVFP+CKHMFH+ CI
Subjt:  QMAMEKLMKPSIDYDCAEDDKVRLKLSECVICLEEFGDKVSCRVFPNCKHMFHMQCI

SwissProt top hitse value%identityAlignment
P93823 RING-H2 finger protein ATL19.5e-0429.75Show/hide
Query:  IVIFGFLLTIIVLISFFGLCIYICFQCYNHEFIDAHRISR--ENRQTATIVDVEELNR----KTQMAMEKLMKPSIDYDCAEDDKVRLKLSECVICLEEF
        I + G L T  +L+S++   I++   C N   ID  R  R   ++    I    E+NR        A+        D    E+D+ +    EC +CL EF
Subjt:  IVIFGFLLTIIVLISFFGLCIYICFQCYNHEFIDAHRISR--ENRQTATIVDVEELNR----KTQMAMEKLMKPSIDYDCAEDDKVRLKLSECVICLEEF

Query:  GDKVSCRVFPNCKHMFHMQCI
         +    R+ PNC H+FH+ CI
Subjt:  GDKVSCRVFPNCKHMFHMQCI

Q8LF65 RING-H2 finger protein ATL171.1e-0463.33Show/hide
Query:  ECVICLEEFGDKVSCRVFPNCKHMFHMQCI
        EC +CL EF D  S RV PNCKH FH+ CI
Subjt:  ECVICLEEFGDKVSCRVFPNCKHMFHMQCI

Q8W571 RING-H2 finger protein ATL323.3e-0439.58Show/hide
Query:  PSIDYDCAEDDKVRLKLSECVICLEEFGDKVSCRVFPNCKHMFHMQCI
        P   Y   ++ K+  K  EC ICL E  D  + R+ P C H+FH+ CI
Subjt:  PSIDYDCAEDDKVRLKLSECVICLEEFGDKVSCRVFPNCKHMFHMQCI

Q9LSW9 RING-H2 finger protein ATL164.3e-0425.78Show/hide
Query:  IVIFGFLLTIIVLISFFGLCIYICFQCYNHEFIDAHRISRENR--QTATIVDVEELNRK----TQMAMEKLMKPSIDYDCAE-------DDKVRLKLSEC
        + + G L T  +L+S++   I  C   +  + +    +SR  R  Q   +V   EL  +    + +    + K    YD  +       +++   +  EC
Subjt:  IVIFGFLLTIIVLISFFGLCIYICFQCYNHEFIDAHRISRENR--QTATIVDVEELNRK----TQMAMEKLMKPSIDYDCAE-------DDKVRLKLSEC

Query:  VICLEEFGDKVSCRVFPNCKHMFHMQCI
         +CL EF D+   R+ PNC H+FH+ CI
Subjt:  VICLEEFGDKVSCRVFPNCKHMFHMQCI

Arabidopsis top hitse value%identityAlignment
AT1G04360.1 RING/U-box superfamily protein6.7e-0529.75Show/hide
Query:  IVIFGFLLTIIVLISFFGLCIYICFQCYNHEFIDAHRISR--ENRQTATIVDVEELNR----KTQMAMEKLMKPSIDYDCAEDDKVRLKLSECVICLEEF
        I + G L T  +L+S++   I++   C N   ID  R  R   ++    I    E+NR        A+        D    E+D+ +    EC +CL EF
Subjt:  IVIFGFLLTIIVLISFFGLCIYICFQCYNHEFIDAHRISR--ENRQTATIVDVEELNR----KTQMAMEKLMKPSIDYDCAEDDKVRLKLSECVICLEEF

Query:  GDKVSCRVFPNCKHMFHMQCI
         +    R+ PNC H+FH+ CI
Subjt:  GDKVSCRVFPNCKHMFHMQCI

AT3G16720.1 TOXICOS EN LEVADURA 24.4e-0424.17Show/hide
Query:  GFLLTIIVLISFFGLCIYICFQCYNHEFI------DAHRISRENRQTATIVDVEELNRKTQMAMEKLMKPSIDYDC---AEDDKVRLKLSECVICLEEFG
        G ++   ++I FF + + +    Y   ++         R SR  R T      +     T +   + + P++          D+      EC +CL EF 
Subjt:  GFLLTIIVLISFFGLCIYICFQCYNHEFI------DAHRISRENRQTATIVDVEELNRKTQMAMEKLMKPSIDYDC---AEDDKVRLKLSECVICLEEFG

Query:  DKVSCRVFPNCKHMFHMQCI
        +  + RV PNC+H FH+ CI
Subjt:  DKVSCRVFPNCKHMFHMQCI

AT4G15975.1 RING/U-box superfamily protein8.0e-0663.33Show/hide
Query:  ECVICLEEFGDKVSCRVFPNCKHMFHMQCI
        EC +CL EF D  S RV PNCKH FH+ CI
Subjt:  ECVICLEEFGDKVSCRVFPNCKHMFHMQCI

AT4G40070.1 RING/U-box superfamily protein2.3e-0539.58Show/hide
Query:  PSIDYDCAEDDKVRLKLSECVICLEEFGDKVSCRVFPNCKHMFHMQCI
        P   Y   ++ K+  K  EC ICL E  D  + R+ P C H+FH+ CI
Subjt:  PSIDYDCAEDDKVRLKLSECVICLEEFGDKVSCRVFPNCKHMFHMQCI

AT5G43420.1 RING/U-box superfamily protein3.0e-0525.78Show/hide
Query:  IVIFGFLLTIIVLISFFGLCIYICFQCYNHEFIDAHRISRENR--QTATIVDVEELNRK----TQMAMEKLMKPSIDYDCAE-------DDKVRLKLSEC
        + + G L T  +L+S++   I  C   +  + +    +SR  R  Q   +V   EL  +    + +    + K    YD  +       +++   +  EC
Subjt:  IVIFGFLLTIIVLISFFGLCIYICFQCYNHEFIDAHRISRENR--QTATIVDVEELNRK----TQMAMEKLMKPSIDYDCAE-------DDKVRLKLSEC

Query:  VICLEEFGDKVSCRVFPNCKHMFHMQCI
         +CL EF D+   R+ PNC H+FH+ CI
Subjt:  VICLEEFGDKVSCRVFPNCKHMFHMQCI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCTATAATCGTCATCTTTGGCTTCTTATTGACCATTATTGTGTTAATTTCCTTCTTCGGCTTGTGCATCTACATATGTTTCCAATGCTACAACCACGAATTTATAGA
TGCCCATCGAATAAGTCGTGAAAATAGACAAACGGCGACAATTGTGGATGTTGAGGAACTAAATCGCAAGACTCAAATGGCTATGGAAAAATTGATGAAGCCATCGATCG
ATTACGATTGTGCGGAGGATGATAAAGTTCGATTGAAGTTGAGTGAATGTGTGATATGTTTGGAGGAGTTTGGAGATAAAGTTTCATGTCGAGTTTTTCCTAATTGTAAG
CATATGTTCCATATGCAATGCATACTCGATTGTACTAATGAGTTTTTTTTAGTACAAGTATTAATAAATATTTATAATATAGATTTCAAAAAAGAAATTTATAATACAGT
TAAATCACTTCACAACAAACTTGAGACCAGCAAACAAGATTCCGAGGATGCAAAATCACCGAGACAGAAATAA
mRNA sequenceShow/hide mRNA sequence
ATGCCTATAATCGTCATCTTTGGCTTCTTATTGACCATTATTGTGTTAATTTCCTTCTTCGGCTTGTGCATCTACATATGTTTCCAATGCTACAACCACGAATTTATAGA
TGCCCATCGAATAAGTCGTGAAAATAGACAAACGGCGACAATTGTGGATGTTGAGGAACTAAATCGCAAGACTCAAATGGCTATGGAAAAATTGATGAAGCCATCGATCG
ATTACGATTGTGCGGAGGATGATAAAGTTCGATTGAAGTTGAGTGAATGTGTGATATGTTTGGAGGAGTTTGGAGATAAAGTTTCATGTCGAGTTTTTCCTAATTGTAAG
CATATGTTCCATATGCAATGCATACTCGATTGTACTAATGAGTTTTTTTTAGTACAAGTATTAATAAATATTTATAATATAGATTTCAAAAAAGAAATTTATAATACAGT
TAAATCACTTCACAACAAACTTGAGACCAGCAAACAAGATTCCGAGGATGCAAAATCACCGAGACAGAAATAA
Protein sequenceShow/hide protein sequence
MPIIVIFGFLLTIIVLISFFGLCIYICFQCYNHEFIDAHRISRENRQTATIVDVEELNRKTQMAMEKLMKPSIDYDCAEDDKVRLKLSECVICLEEFGDKVSCRVFPNCK
HMFHMQCILDCTNEFFLVQVLINIYNIDFKKEIYNTVKSLHNKLETSKQDSEDAKSPRQK