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Sed0002532 (gene) of Chayote v1 genome

Gene IDSed0002532
OrganismSechium edule (Chayote v1)
DescriptionReverse transcriptase, RNA-dependent DNA polymerase
Genome locationLG08:8062520..8063388
RNA-Seq ExpressionSed0002532
SyntenySed0002532
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0067279.1 uncharacterized protein E6C27_scaffold418G001000 [Cucumis melo var. makuwa]1.6e-2242.94Show/hide
Query:  TFRFSKPSFLNQVLNQTTSIKLDSSNFLLWKNLALPLLKSQKLLDFLTREYKCPPKNSFFYVPKQGAQVGSPTFSVGPSSSPFLVSSHMEPMGSLPSPLS
        T  F+ P  LNQ+LNQ T+IKLD  N+LLWK LALP+LKS KL   L  E  C PK                  +  P+ S  +V +  EP     S  +
Subjt:  TFRFSKPSFLNQVLNQTTSIKLDSSNFLLWKNLALPLLKSQKLLDFLTREYKCPPKNSFFYVPKQGAQVGSPTFSVGPSSSPFLVSSHMEPMGSLPSPLS

Query:  DINDFYVYDAHENWVLVDQLVLGWLYNCMTSEVATQVMGHETSHDLWTAIHELFGAQSCVEEDFLRHTFQ
         +    V   +E W+  D L+LGWLYN MT EV  Q+MG   + DLW A  +LFG QS  +EDFL  TFQ
Subjt:  DINDFYVYDAHENWVLVDQLVLGWLYNCMTSEVATQVMGHETSHDLWTAIHELFGAQSCVEEDFLRHTFQ

XP_016900937.1 PREDICTED: uncharacterized protein LOC107991116 [Cucumis melo]1.6e-2242.94Show/hide
Query:  TFRFSKPSFLNQVLNQTTSIKLDSSNFLLWKNLALPLLKSQKLLDFLTREYKCPPKNSFFYVPKQGAQVGSPTFSVGPSSSPFLVSSHMEPMGSLPSPLS
        T  F+ P  LNQ+LNQ T+IKLD  N+LLWK LALP+LKS KL   L  E  C PK                  +  P+ S  +V +  EP     S  +
Subjt:  TFRFSKPSFLNQVLNQTTSIKLDSSNFLLWKNLALPLLKSQKLLDFLTREYKCPPKNSFFYVPKQGAQVGSPTFSVGPSSSPFLVSSHMEPMGSLPSPLS

Query:  DINDFYVYDAHENWVLVDQLVLGWLYNCMTSEVATQVMGHETSHDLWTAIHELFGAQSCVEEDFLRHTFQ
         +    V   +E W+  D L+LGWLYN MT EV  Q+MG   + DLW A  +LFG QS  +EDFL  TFQ
Subjt:  DINDFYVYDAHENWVLVDQLVLGWLYNCMTSEVATQVMGHETSHDLWTAIHELFGAQSCVEEDFLRHTFQ

XP_022151683.1 uncharacterized protein LOC111019598 [Momordica charantia]6.2e-2747.31Show/hide
Query:  FSKPSFLNQVLNQTTSIKLDSSNFLLWKNLALPLLKSQKLLDFLTREYKCPPKNSFFYVPKQGAQVGSPTFSVGPSSSPFLVSSHMEPMGSLPSPLSDIN
        F+ P  LNQ+LNQ TSIK+D  NFLLW+NLALP+L+S KL D+LT +  CPP +    VP       +PT   G +SS            S P+    +N
Subjt:  FSKPSFLNQVLNQTTSIKLDSSNFLLWKNLALPLLKSQKLLDFLTREYKCPPKNSFFYVPKQGAQVGSPTFSVGPSSSPFLVSSHMEPMGSLPSPLSDIN

Query:  DFYVYDAHENWVLVDQLVLGWLYNCMTSEVATQVMGHETSHDLWTAIHELFGAQSCVEEDFLRHTFQ
          Y     E W++VD+L+LGWLYN M ++VA QVMG  TS +LWTA+ ELFG QS  E D+L+  FQ
Subjt:  DFYVYDAHENWVLVDQLVLGWLYNCMTSEVATQVMGHETSHDLWTAIHELFGAQSCVEEDFLRHTFQ

XP_031745012.1 uncharacterized protein LOC116405217 [Cucumis sativus]2.1e-2745.93Show/hide
Query:  SETFRFSKPSFLNQVLNQTTSIKLDSSNFLLWKNLALPLLKSQKLLDFLTREYKCPPKNSFFYVPKQGAQVGSPTFSVGPSSSPFLVSSHMEPMGSLPSP
        S T  FS P  LNQ+LNQ  S+KLD  N+LLW+ LALP+LKS KL   LT E +CPPK  F   P  GA   S T                         
Subjt:  SETFRFSKPSFLNQVLNQTTSIKLDSSNFLLWKNLALPLLKSQKLLDFLTREYKCPPKNSFFYVPKQGAQVGSPTFSVGPSSSPFLVSSHMEPMGSLPSP

Query:  LSDINDFYVYDAHENWVLVDQLVLGWLYNCMTSEVATQVMGHETSHDLWTAIHELFGAQSCVEEDFLRHTFQ
                V    + WV  D L+LGW+YN MT EVA Q+MG  T+ DLW AI +LFG Q   EEDFLRHTFQ
Subjt:  LSDINDFYVYDAHENWVLVDQLVLGWLYNCMTSEVATQVMGHETSHDLWTAIHELFGAQSCVEEDFLRHTFQ

XP_038902487.1 uncharacterized protein LOC120089143 [Benincasa hispida]3.2e-2345.86Show/hide
Query:  TSIKLDSSNFLLWKNLALPLLKSQKLLDFLTREYKCPPKNSFFYVPKQGAQVGSPTFSVGPSSSPFLVSSHMEPMG----SLPSPLSDINDFYVYDAHEN
        T+IKLD  N+LLW+NLALP+L+S +L   LT E  CPP+  F     Q      P    G       ++S     G    S  SP+  +N FY     E+
Subjt:  TSIKLDSSNFLLWKNLALPLLKSQKLLDFLTREYKCPPKNSFFYVPKQGAQVGSPTFSVGPSSSPFLVSSHMEPMG----SLPSPLSDINDFYVYDAHEN

Query:  WVLVDQLVLGWLYNCMTSEVATQVMGHETSHDLWTAIHELFGAQSCVEEDFLRHTFQ
          +VDQL+LGWLYN MT+EVA QVMG+E    LW AI ELFG QS   ED+LR  FQ
Subjt:  WVLVDQLVLGWLYNCMTSEVATQVMGHETSHDLWTAIHELFGAQSCVEEDFLRHTFQ

TrEMBL top hitse value%identityAlignment
A0A1S4DY80 uncharacterized protein LOC1079911167.6e-2342.94Show/hide
Query:  TFRFSKPSFLNQVLNQTTSIKLDSSNFLLWKNLALPLLKSQKLLDFLTREYKCPPKNSFFYVPKQGAQVGSPTFSVGPSSSPFLVSSHMEPMGSLPSPLS
        T  F+ P  LNQ+LNQ T+IKLD  N+LLWK LALP+LKS KL   L  E  C PK                  +  P+ S  +V +  EP     S  +
Subjt:  TFRFSKPSFLNQVLNQTTSIKLDSSNFLLWKNLALPLLKSQKLLDFLTREYKCPPKNSFFYVPKQGAQVGSPTFSVGPSSSPFLVSSHMEPMGSLPSPLS

Query:  DINDFYVYDAHENWVLVDQLVLGWLYNCMTSEVATQVMGHETSHDLWTAIHELFGAQSCVEEDFLRHTFQ
         +    V   +E W+  D L+LGWLYN MT EV  Q+MG   + DLW A  +LFG QS  +EDFL  TFQ
Subjt:  DINDFYVYDAHENWVLVDQLVLGWLYNCMTSEVATQVMGHETSHDLWTAIHELFGAQSCVEEDFLRHTFQ

A0A1S4E1U6 uncharacterized protein LOC107991581 isoform X11.3e-2243.71Show/hide
Query:  FSKPSFLNQVLNQTTSIKLDSSNFLLWKNLALPLLKSQKLLDFLTREYKCPPKNSFFYVPKQGAQVGSPTFSVGPSSSPFLVSSHMEPMGSLPSPLSDIN
        FS P  LNQ+LNQ T++KLD  N+LLWK LALP+LK  KL   LT E  CP                   F +  SSS   V+   E   +     S I 
Subjt:  FSKPSFLNQVLNQTTSIKLDSSNFLLWKNLALPLLKSQKLLDFLTREYKCPPKNSFFYVPKQGAQVGSPTFSVGPSSSPFLVSSHMEPMGSLPSPLSDIN

Query:  DFYVYDAHENWVLVDQLVLGWLYNCMTSEVATQVMGHETSHDLWTAIHELFGAQSCVEEDFLRHTFQ
           V    E WV  D L+LGWLYN MT +VA Q+MG     DLW A  + FG QS  EEDFLR   Q
Subjt:  DFYVYDAHENWVLVDQLVLGWLYNCMTSEVATQVMGHETSHDLWTAIHELFGAQSCVEEDFLRHTFQ

A0A1S4E1U9 uncharacterized protein LOC107991581 isoform X41.3e-2243.71Show/hide
Query:  FSKPSFLNQVLNQTTSIKLDSSNFLLWKNLALPLLKSQKLLDFLTREYKCPPKNSFFYVPKQGAQVGSPTFSVGPSSSPFLVSSHMEPMGSLPSPLSDIN
        FS P  LNQ+LNQ T++KLD  N+LLWK LALP+LK  KL   LT E  CP                   F +  SSS   V+   E   +     S I 
Subjt:  FSKPSFLNQVLNQTTSIKLDSSNFLLWKNLALPLLKSQKLLDFLTREYKCPPKNSFFYVPKQGAQVGSPTFSVGPSSSPFLVSSHMEPMGSLPSPLSDIN

Query:  DFYVYDAHENWVLVDQLVLGWLYNCMTSEVATQVMGHETSHDLWTAIHELFGAQSCVEEDFLRHTFQ
           V    E WV  D L+LGWLYN MT +VA Q+MG     DLW A  + FG QS  EEDFLR   Q
Subjt:  DFYVYDAHENWVLVDQLVLGWLYNCMTSEVATQVMGHETSHDLWTAIHELFGAQSCVEEDFLRHTFQ

A0A5A7VPY0 Uncharacterized protein7.6e-2342.94Show/hide
Query:  TFRFSKPSFLNQVLNQTTSIKLDSSNFLLWKNLALPLLKSQKLLDFLTREYKCPPKNSFFYVPKQGAQVGSPTFSVGPSSSPFLVSSHMEPMGSLPSPLS
        T  F+ P  LNQ+LNQ T+IKLD  N+LLWK LALP+LKS KL   L  E  C PK                  +  P+ S  +V +  EP     S  +
Subjt:  TFRFSKPSFLNQVLNQTTSIKLDSSNFLLWKNLALPLLKSQKLLDFLTREYKCPPKNSFFYVPKQGAQVGSPTFSVGPSSSPFLVSSHMEPMGSLPSPLS

Query:  DINDFYVYDAHENWVLVDQLVLGWLYNCMTSEVATQVMGHETSHDLWTAIHELFGAQSCVEEDFLRHTFQ
         +    V   +E W+  D L+LGWLYN MT EV  Q+MG   + DLW A  +LFG QS  +EDFL  TFQ
Subjt:  DINDFYVYDAHENWVLVDQLVLGWLYNCMTSEVATQVMGHETSHDLWTAIHELFGAQSCVEEDFLRHTFQ

A0A6J1DCW4 uncharacterized protein LOC1110195983.0e-2747.31Show/hide
Query:  FSKPSFLNQVLNQTTSIKLDSSNFLLWKNLALPLLKSQKLLDFLTREYKCPPKNSFFYVPKQGAQVGSPTFSVGPSSSPFLVSSHMEPMGSLPSPLSDIN
        F+ P  LNQ+LNQ TSIK+D  NFLLW+NLALP+L+S KL D+LT +  CPP +    VP       +PT   G +SS            S P+    +N
Subjt:  FSKPSFLNQVLNQTTSIKLDSSNFLLWKNLALPLLKSQKLLDFLTREYKCPPKNSFFYVPKQGAQVGSPTFSVGPSSSPFLVSSHMEPMGSLPSPLSDIN

Query:  DFYVYDAHENWVLVDQLVLGWLYNCMTSEVATQVMGHETSHDLWTAIHELFGAQSCVEEDFLRHTFQ
          Y     E W++VD+L+LGWLYN M ++VA QVMG  TS +LWTA+ ELFG QS  E D+L+  FQ
Subjt:  DFYVYDAHENWVLVDQLVLGWLYNCMTSEVATQVMGHETSHDLWTAIHELFGAQSCVEEDFLRHTFQ

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCAACGCCAATTTTTCAGAAACCTTTAGGTTTAGTAAACCTTCCTTCTTAAACCAGGTGCTCAATCAGACCACTAGCATCAAATTGGATAGTTCAAATTTTCTTCT
TTGGAAAAATCTAGCATTACCCCTTCTTAAATCTCAAAAACTCCTTGATTTTCTGACTAGGGAGTATAAATGTCCTCCCAAAAATTCCTTTTTTTATGTCCCAAAGCAGG
GGGCCCAGGTGGGCTCCCCCACTTTTTCTGTGGGCCCCTCCTCTTCCCCTTTTTTGGTATCTTCTCACATGGAACCAATGGGTTCCCTTCCCTCTCCTTTATCTGATATT
AATGATTTTTATGTTTATGATGCACATGAGAATTGGGTGCTGGTGGACCAACTTGTACTGGGATGGTTGTACAACTGTATGACGTCCGAGGTTGCAACTCAAGTGATGGG
TCATGAAACTTCTCACGACTTGTGGACCGCTATTCATGAGTTGTTTGGTGCTCAATCTTGTGTTGAAGAGGATTTCCTTCGTCATACTTTTCAGTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCCAACGCCAATTTTTCAGAAACCTTTAGGTTTAGTAAACCTTCCTTCTTAAACCAGGTGCTCAATCAGACCACTAGCATCAAATTGGATAGTTCAAATTTTCTTCT
TTGGAAAAATCTAGCATTACCCCTTCTTAAATCTCAAAAACTCCTTGATTTTCTGACTAGGGAGTATAAATGTCCTCCCAAAAATTCCTTTTTTTATGTCCCAAAGCAGG
GGGCCCAGGTGGGCTCCCCCACTTTTTCTGTGGGCCCCTCCTCTTCCCCTTTTTTGGTATCTTCTCACATGGAACCAATGGGTTCCCTTCCCTCTCCTTTATCTGATATT
AATGATTTTTATGTTTATGATGCACATGAGAATTGGGTGCTGGTGGACCAACTTGTACTGGGATGGTTGTACAACTGTATGACGTCCGAGGTTGCAACTCAAGTGATGGG
TCATGAAACTTCTCACGACTTGTGGACCGCTATTCATGAGTTGTTTGGTGCTCAATCTTGTGTTGAAGAGGATTTCCTTCGTCATACTTTTCAGTAA
Protein sequenceShow/hide protein sequence
MANANFSETFRFSKPSFLNQVLNQTTSIKLDSSNFLLWKNLALPLLKSQKLLDFLTREYKCPPKNSFFYVPKQGAQVGSPTFSVGPSSSPFLVSSHMEPMGSLPSPLSDI
NDFYVYDAHENWVLVDQLVLGWLYNCMTSEVATQVMGHETSHDLWTAIHELFGAQSCVEEDFLRHTFQ