CuGenDBv2

Gene ID	Sed0002542
Organism	Sechium edule (Chayote v1)
Description	Pre-mRNA cleavage factor Im 25 kDa subunit
Genome location	LG12:1024234..1030377
RNA-Seq Expression	Sed0002542
Synteny	Sed0002542
Gene Ontology terms	GO:0006364 - rRNA processing (biological process) GO:0006378 - mRNA polyadenylation (biological process) GO:0005829 - cytosol (cellular component) GO:0005849 - mRNA cleavage factor complex (cellular component) GO:0003729 - mRNA binding (molecular function)
InterPro domains	IPR015797 - NUDIX hydrolase-like domain superfamily IPR016706 - Cleavage/polyadenylation specificity factor subunit 5

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_004133873.1 pre-mRNA cleavage factor Im 25 kDa subunit 2 [Cucumis sativus]

1.7e-110

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Query:  MVTSPVVNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHKHPHILLLQIGNTFCKLPGGRLKPGENEIDGLKRKLTSKLG
        MVTSPVVNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHKHPHILLLQIGNTFCKLPGGRLKPGENEI+GLKRKLTSKLG
Subjt:  MVTSPVVNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHKHPHILLLQIGNTFCKLPGGRLKPGENEIDGLKRKLTSKLG

Query:  AHSPAHQPDWQIGECVAIWWRPNFETVMYPYCPPHITKPKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYGPVISTIPQQLSRFQFNMITT
        A+SP+ QPDWQIGECVAIWWRPNFETVMYPYCPPHITKPKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYGPVISTIPQQLSRFQFNMITT
Subjt:  AHSPAHQPDWQIGECVAIWWRPNFETVMYPYCPPHITKPKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYGPVISTIPQQLSRFQFNMITT

XP_021293201.1 pre-mRNA cleavage factor Im 25 kDa subunit 2 [Herrania umbratica]

1.6e-108

95.5

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Query:  MVTSPVVNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHKHPHILLLQIGNTFCKLPGGRLKPGENEIDGLKRKLTSKLG
        MVTSPVVNTYPLSSYTFGTKEPK+EKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEH HPHILLLQIGNTFCKLPGGRLKPGENEI+GLKRKLTSKLG
Subjt:  MVTSPVVNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHKHPHILLLQIGNTFCKLPGGRLKPGENEIDGLKRKLTSKLG

Query:  AHSPAHQPDWQIGECVAIWWRPNFETVMYPYCPPHITKPKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYGPVISTIPQQLSRFQFNMITT
        A+SPA  PDWQIGECVAIWWRPNFET+MYPYCPPHITKPKECKKLF+VHLSE+EYFAVPKNLKLLAVPLFELYDNVQRYGPVISTIPQQLSRFQFNMITT
Subjt:  AHSPAHQPDWQIGECVAIWWRPNFETVMYPYCPPHITKPKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYGPVISTIPQQLSRFQFNMITT

XP_022147484.1 pre-mRNA cleavage factor Im 25 kDa subunit 2 [Momordica charantia]

7.8e-111

98.5

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Query:  MVTSPVVNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHKHPHILLLQIGNTFCKLPGGRLKPGENEIDGLKRKLTSKLG
        MVTSPVVNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHKHPHILLLQIGNTFCKLPGGRLKPGENEI+GLKRKLTSKLG
Subjt:  MVTSPVVNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHKHPHILLLQIGNTFCKLPGGRLKPGENEIDGLKRKLTSKLG

Query:  AHSPAHQPDWQIGECVAIWWRPNFETVMYPYCPPHITKPKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYGPVISTIPQQLSRFQFNMITT
        A+SPA QPDWQIGECVAIWWRPNFETVMYPYCPPHITKPKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYGPVISTIPQQLSRFQFNMITT
Subjt:  AHSPAHQPDWQIGECVAIWWRPNFETVMYPYCPPHITKPKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYGPVISTIPQQLSRFQFNMITT

XP_022924789.1 pre-mRNA cleavage factor Im 25 kDa subunit 2 [Cucurbita moschata]

9.5e-109

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Query:  MVTSPVVNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHKHPHILLLQIGNTFCKLPGGRLKPGENEIDGLKRKLTSKLG
        MVTSPVVNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEH HPHILLLQIGNTFCKLPGGRLKPGENEI+GLKRKLTSKLG
Subjt:  MVTSPVVNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHKHPHILLLQIGNTFCKLPGGRLKPGENEIDGLKRKLTSKLG

Query:  AHSPAHQPDWQIGECVAIWWRPNFETVMYPYCPPHITKPKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYGPVISTIPQQLSRFQFNMITT
        A+SPA QPDWQIGECVA WWRPNFETVMYPYCPPHITK KECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYGPVISTIPQQLSRFQFNMITT
Subjt:  AHSPAHQPDWQIGECVAIWWRPNFETVMYPYCPPHITKPKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYGPVISTIPQQLSRFQFNMITT

XP_031259563.1 pre-mRNA cleavage factor Im 25 kDa subunit 2 [Pistacia vera]

7.3e-109

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Query:  MVTSPVVNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHKHPHILLLQIGNTFCKLPGGRLKPGENEIDGLKRKLTSKLG
        MVTSPVVNTYPLSSYTFGTKEPK+EKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEH HPHILLLQIGNTFCKLPGGRLKPGENEI+GLKRKLTSKLG
Subjt:  MVTSPVVNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHKHPHILLLQIGNTFCKLPGGRLKPGENEIDGLKRKLTSKLG

Query:  AHSPAHQPDWQIGECVAIWWRPNFETVMYPYCPPHITKPKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYGPVISTIPQQLSRFQFNMITT
        A+SPA  PDWQIGECVAIWWRPNFET+MYPYCPPHITKPKECKKLF+VHLSEREYFAVPKNLKLLAVPLFELYDNVQRYGPVISTIPQQLSRFQFNMITT
Subjt:  AHSPAHQPDWQIGECVAIWWRPNFETVMYPYCPPHITKPKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYGPVISTIPQQLSRFQFNMITT

TrEMBL top hits

e value

%identity

Alignment

A0A0A0L8Y2 Pre-mRNA cleavage factor Im 25 kDa subunit

8.4e-111

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Query:  MVTSPVVNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHKHPHILLLQIGNTFCKLPGGRLKPGENEIDGLKRKLTSKLG
        MVTSPVVNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHKHPHILLLQIGNTFCKLPGGRLKPGENEI+GLKRKLTSKLG
Subjt:  MVTSPVVNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHKHPHILLLQIGNTFCKLPGGRLKPGENEIDGLKRKLTSKLG

Query:  AHSPAHQPDWQIGECVAIWWRPNFETVMYPYCPPHITKPKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYGPVISTIPQQLSRFQFNMITT
        A+SP+ QPDWQIGECVAIWWRPNFETVMYPYCPPHITKPKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYGPVISTIPQQLSRFQFNMITT
Subjt:  AHSPAHQPDWQIGECVAIWWRPNFETVMYPYCPPHITKPKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYGPVISTIPQQLSRFQFNMITT

A0A5D3D0Y8 Pre-mRNA cleavage factor Im 25 kDa subunit

8.4e-111

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Query:  MVTSPVVNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHKHPHILLLQIGNTFCKLPGGRLKPGENEIDGLKRKLTSKLG
        MVTSPVVNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHKHPHILLLQIGNTFCKLPGGRLKPGENEI+GLKRKLTSKLG
Subjt:  MVTSPVVNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHKHPHILLLQIGNTFCKLPGGRLKPGENEIDGLKRKLTSKLG

Query:  AHSPAHQPDWQIGECVAIWWRPNFETVMYPYCPPHITKPKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYGPVISTIPQQLSRFQFNMITT
        A+SP+ QPDWQIGECVAIWWRPNFETVMYPYCPPHITKPKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYGPVISTIPQQLSRFQFNMITT
Subjt:  AHSPAHQPDWQIGECVAIWWRPNFETVMYPYCPPHITKPKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYGPVISTIPQQLSRFQFNMITT

A0A6J1D153 Pre-mRNA cleavage factor Im 25 kDa subunit

3.8e-111

98.5

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Query:  MVTSPVVNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHKHPHILLLQIGNTFCKLPGGRLKPGENEIDGLKRKLTSKLG
        MVTSPVVNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHKHPHILLLQIGNTFCKLPGGRLKPGENEI+GLKRKLTSKLG
Subjt:  MVTSPVVNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHKHPHILLLQIGNTFCKLPGGRLKPGENEIDGLKRKLTSKLG

Query:  AHSPAHQPDWQIGECVAIWWRPNFETVMYPYCPPHITKPKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYGPVISTIPQQLSRFQFNMITT
        A+SPA QPDWQIGECVAIWWRPNFETVMYPYCPPHITKPKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYGPVISTIPQQLSRFQFNMITT
Subjt:  AHSPAHQPDWQIGECVAIWWRPNFETVMYPYCPPHITKPKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYGPVISTIPQQLSRFQFNMITT

A0A6J1GGL6 Pre-mRNA cleavage factor Im 25 kDa subunit

3.8e-111

98.5

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Query:  MVTSPVVNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHKHPHILLLQIGNTFCKLPGGRLKPGENEIDGLKRKLTSKLG
        MVTSPVVNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHKHPHILLLQIGNTFCKLPGGRLKPGENEI+GLKRKLTSKLG
Subjt:  MVTSPVVNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHKHPHILLLQIGNTFCKLPGGRLKPGENEIDGLKRKLTSKLG

Query:  AHSPAHQPDWQIGECVAIWWRPNFETVMYPYCPPHITKPKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYGPVISTIPQQLSRFQFNMITT
        A+SPA QPDWQIGECVAIWWRPNFETVMYPYCPPHITKPKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYGPVISTIPQQLSRFQFNMITT
Subjt:  AHSPAHQPDWQIGECVAIWWRPNFETVMYPYCPPHITKPKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYGPVISTIPQQLSRFQFNMITT

A0A6J1IEE3 Pre-mRNA cleavage factor Im 25 kDa subunit

3.8e-111

98.5

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Query:  MVTSPVVNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHKHPHILLLQIGNTFCKLPGGRLKPGENEIDGLKRKLTSKLG
        MVTSPVVNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHKHPHILLLQIGNTFCKLPGGRLKPGENEI+GLKRKLTSKLG
Subjt:  MVTSPVVNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHKHPHILLLQIGNTFCKLPGGRLKPGENEIDGLKRKLTSKLG

Query:  AHSPAHQPDWQIGECVAIWWRPNFETVMYPYCPPHITKPKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYGPVISTIPQQLSRFQFNMITT
        A+SPA QPDWQIGECVAIWWRPNFETVMYPYCPPHITKPKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYGPVISTIPQQLSRFQFNMITT
Subjt:  AHSPAHQPDWQIGECVAIWWRPNFETVMYPYCPPHITKPKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYGPVISTIPQQLSRFQFNMITT

SwissProt top hits

e value

%identity

Alignment

O43809 Cleavage and polyadenylation specificity factor subunit 5

8.7e-65

61.38

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Query:  VNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHKHPHILLLQIGNTFCKLPGGRLKPGENEIDGLKRKLTSKLGAHSPAH
        +N YPL++YTFGTKEP  EKD+SVA R  RM+  + K GMR +VE +L+V EH+ PH+LLLQ+G TF KLPGG L PGE+E++GLKR +T  LG      
Subjt:  VNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHKHPHILLLQIGNTFCKLPGGRLKPGENEIDGLKRKLTSKLGAHSPAH

Query:  QPDWQIGECVAIWWRPNFETVMYPYCPPHITKPKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYGPVISTIPQQLSRFQF
        Q DW I +C+  WWRPNFE   YPY P HITKPKE KKLF+V L E+  FAVPKN KL+A PLFELYDN   YGP+IS++PQ LSRF F
Subjt:  QPDWQIGECVAIWWRPNFETVMYPYCPPHITKPKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYGPVISTIPQQLSRFQF

Q3ZCA2 Cleavage and polyadenylation specificity factor subunit 5

8.7e-65

61.38

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Query:  VNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHKHPHILLLQIGNTFCKLPGGRLKPGENEIDGLKRKLTSKLGAHSPAH
        +N YPL++YTFGTKEP  EKD+SVA R  RM+  + K GMR +VE +L+V EH+ PH+LLLQ+G TF KLPGG L PGE+E++GLKR +T  LG      
Subjt:  VNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHKHPHILLLQIGNTFCKLPGGRLKPGENEIDGLKRKLTSKLGAHSPAH

Query:  QPDWQIGECVAIWWRPNFETVMYPYCPPHITKPKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYGPVISTIPQQLSRFQF
        Q DW I +C+  WWRPNFE   YPY P HITKPKE KKLF+V L E+  FAVPKN KL+A PLFELYDN   YGP+IS++PQ LSRF F
Subjt:  QPDWQIGECVAIWWRPNFETVMYPYCPPHITKPKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYGPVISTIPQQLSRFQF

Q6DJE4 Cleavage and polyadenylation specificity factor subunit 5

3.9e-65

61.38

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Query:  VNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHKHPHILLLQIGNTFCKLPGGRLKPGENEIDGLKRKLTSKLGAHSPAH
        +N YPL++YTFGTKEP  EKD+SVA R  RM+  + K GMR +VE +L+V EH+ PH+LLLQ+G TF KLPGG L PGE+E++GLKR +T  LG      
Subjt:  VNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHKHPHILLLQIGNTFCKLPGGRLKPGENEIDGLKRKLTSKLGAHSPAH

Query:  QPDWQIGECVAIWWRPNFETVMYPYCPPHITKPKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYGPVISTIPQQLSRFQF
        Q DW I +C+  WWRPNFE   YPY P HITKPKE KKLF+V L E+  FAVPKN KL+A PLFELYDN   YGP+IS++PQ LSRF F
Subjt:  QPDWQIGECVAIWWRPNFETVMYPYCPPHITKPKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYGPVISTIPQQLSRFQF

Q7T3C6 Cleavage and polyadenylation specificity factor subunit 5

3.9e-65

61.38

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Query:  VNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHKHPHILLLQIGNTFCKLPGGRLKPGENEIDGLKRKLTSKLGAHSPAH
        +N YPL++YTFGTKEP  EKD+SVA R  RM+  + K GMR +VE +L+V EH+ PH+LLLQ+G TF KLPGG L PGE+E++GLKR +T  LG      
Subjt:  VNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHKHPHILLLQIGNTFCKLPGGRLKPGENEIDGLKRKLTSKLGAHSPAH

Query:  QPDWQIGECVAIWWRPNFETVMYPYCPPHITKPKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYGPVISTIPQQLSRFQF
        Q DW I +C+  WWRPNFE   YPY P HITKPKE KKLF+V L E+  FAVPKN KL+A PLFELYDN   YGP+IS++PQ LSRF F
Subjt:  QPDWQIGECVAIWWRPNFETVMYPYCPPHITKPKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYGPVISTIPQQLSRFQF

Q8GXS3 Pre-mRNA cleavage factor Im 25 kDa subunit 2

4.7e-103

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Query:  MVTSPVVNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHKHPHILLLQIGNTFCKLPGGRLKPGENEIDGLKRKLTSKLG
        M  S VVNTYPLS+Y+FGTKEPKLEKDTSVADRLARMK+NYMKEGMRTSVE ILLVQEH HPHILLLQIGNTFCKLPGGRLKPGENE DGLKRKLTSKLG
Subjt:  MVTSPVVNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHKHPHILLLQIGNTFCKLPGGRLKPGENEIDGLKRKLTSKLG

Query:  AHSPAHQPDWQIGECVAIWWRPNFETVMYPYCPPHITKPKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYGPVISTIPQQLSRFQFNMITT
         +S A  PDW +GECVA WWRPNFET+MYPYCPPHITKPKECK+L+IVHLSE+EYFAVPKNLKLLAVPLFELYDNVQRYGPVISTIPQQLSRF FNMI++
Subjt:  AHSPAHQPDWQIGECVAIWWRPNFETVMYPYCPPHITKPKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYGPVISTIPQQLSRFQFNMITT

Arabidopsis top hits

e value

%identity

Alignment

AT4G25550.1 Cleavage/polyadenylation specificity factor, 25kDa subunit

3.4e-104

Show/hide

Query:  MVTSPVVNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHKHPHILLLQIGNTFCKLPGGRLKPGENEIDGLKRKLTSKLG
        M  S VVNTYPLS+Y+FGTKEPKLEKDTSVADRLARMK+NYMKEGMRTSVE ILLVQEH HPHILLLQIGNTFCKLPGGRLKPGENE DGLKRKLTSKLG
Subjt:  MVTSPVVNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHKHPHILLLQIGNTFCKLPGGRLKPGENEIDGLKRKLTSKLG

Query:  AHSPAHQPDWQIGECVAIWWRPNFETVMYPYCPPHITKPKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYGPVISTIPQQLSRFQFNMITT
         +S A  PDW +GECVA WWRPNFET+MYPYCPPHITKPKECK+L+IVHLSE+EYFAVPKNLKLLAVPLFELYDNVQRYGPVISTIPQQLSRF FNMI++
Subjt:  AHSPAHQPDWQIGECVAIWWRPNFETVMYPYCPPHITKPKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYGPVISTIPQQLSRFQFNMITT

AT4G29820.1 homolog of CFIM-25

9.9e-64

56.48

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Query:  VVNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHKHPHILLLQIGNTFCKLPGGRLKPGENEIDGLKRKLTSKLGAHSPA
        +V+ YPLSSY FG+KE    KD  ++DR+ R+K NY   G+RT VEA+LLV+  KHPH+LLLQ  N+  KLPGGRL+PGE++I+GLKRKL SKL  +   
Subjt:  VVNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHKHPHILLLQIGNTFCKLPGGRLKPGENEIDGLKRKLTSKLGAHSPA

Query:  HQPDWQIGECVAIWWRPNFETVMYPYCPPHITKPKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYGPVISTIPQQLSRFQFNMI
            +++GEC+ +WWRPNFET+MYP+ PP+I  PKEC KLF+V L   + F VPKN KLLAVPL +L++N + YGP++S IP+ LS+F FNM+
Subjt:  HQPDWQIGECVAIWWRPNFETVMYPYCPPHITKPKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYGPVISTIPQQLSRFQFNMI

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGTGACGTCGCCGGTGGTGAACACCTATCCTCTGTCCAGCTACACCTTCGGCACTAAAGAACCGAAGCTCGAGAAGGACACCTCCGTCGCCGATCGTCTTGCTCGCAT
GAAAGTCAACTATATGAAGGAAGGCATGAGGACGAGTGTTGAAGCAATTCTGCTGGTGCAAGAACATAAGCATCCTCATATTCTACTTCTGCAAATTGGAAATACATTTT
GCAAGCTCCCTGGGGGCCGTTTGAAGCCGGGCGAGAATGAAATTGACGGTTTAAAGAGGAAACTGACGAGCAAACTGGGTGCACATTCTCCTGCCCACCAACCTGATTGG
CAGATTGGTGAATGTGTGGCTATTTGGTGGAGACCAAACTTCGAAACTGTCATGTATCCATATTGCCCGCCTCATATTACGAAACCTAAGGAATGCAAAAAGCTTTTCAT
TGTTCACTTGTCTGAAAGAGAGTACTTCGCAGTTCCTAAAAATTTGAAGCTACTTGCAGTTCCTTTGTTTGAACTCTATGACAATGTTCAGAGATATGGACCAGTTATAT
CGACGATCCCGCAGCAGCTTTCGAGGTTTCAGTTCAACATGATCACCACGACATGA

mRNA sequence

Show/hide mRNA sequence

GCCATATTTCACAAAAACTCTGAAGGGCCATTTAAGCAAATTCCATTTCAGACATTTTAACCCAAATAACCTGCAGCAGTGTTCACGATAGCAGATCATTTCCAAGGTTT
TTGTGTACTTCGATCTCCGCCGTGCTCGGCAGTTCTACAGTGACGGCAGCCATGGTGACGTCGCCGGTGGTGAACACCTATCCTCTGTCCAGCTACACCTTCGGCACTAA
AGAACCGAAGCTCGAGAAGGACACCTCCGTCGCCGATCGTCTTGCTCGCATGAAAGTCAACTATATGAAGGAAGGCATGAGGACGAGTGTTGAAGCAATTCTGCTGGTGC
AAGAACATAAGCATCCTCATATTCTACTTCTGCAAATTGGAAATACATTTTGCAAGCTCCCTGGGGGCCGTTTGAAGCCGGGCGAGAATGAAATTGACGGTTTAAAGAGG
AAACTGACGAGCAAACTGGGTGCACATTCTCCTGCCCACCAACCTGATTGGCAGATTGGTGAATGTGTGGCTATTTGGTGGAGACCAAACTTCGAAACTGTCATGTATCC
ATATTGCCCGCCTCATATTACGAAACCTAAGGAATGCAAAAAGCTTTTCATTGTTCACTTGTCTGAAAGAGAGTACTTCGCAGTTCCTAAAAATTTGAAGCTACTTGCAG
TTCCTTTGTTTGAACTCTATGACAATGTTCAGAGATATGGACCAGTTATATCGACGATCCCGCAGCAGCTTTCGAGGTTTCAGTTCAACATGATCACCACGACATGAGAT
CCCAAGGCATGAACTCGGAATTTATAGCTTGGACAAGCTCTCAATTTGCGATATTAAGGACATTATCAACCTTTTTTGAGTTAGGATAGCATGCTTATTATATAGACTTT
GTTGTTCTTGACATTTTCATCGATGAGTTTATAAGCCAGAACCTATGAACATTTATGTTACTTCTAACAAAGAAAATTGACTGATGTTTTGTGTAACGATTGAACTTTAT
GAAGGTTTTAGAGTGTGAAGTATGTATGTATGGTGCATCATTTGTAATAGTGGTTAAATTGTGGATACTCTCAGATTTTGTGGGTTCCAATTCAGAATCTTGGCCTTAGT
TTTCTGTTTTTCTGGTTTTGTGCAACCTTTGAAGTGTG

Protein sequence

Show/hide protein sequence

MVTSPVVNTYPLSSYTFGTKEPKLEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHKHPHILLLQIGNTFCKLPGGRLKPGENEIDGLKRKLTSKLGAHSPAHQPDW
QIGECVAIWWRPNFETVMYPYCPPHITKPKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYGPVISTIPQQLSRFQFNMITTT

Sed0002542 (gene) of Chayote v1 genome