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Sed0002564 (gene) of Chayote v1 genome

Gene IDSed0002564
OrganismSechium edule (Chayote v1)
DescriptionRING-type E3 ubiquitin transferase
Genome locationLG01:8175728..8176096
RNA-Seq ExpressionSed0002564
SyntenySed0002564
Gene Ontology termsGO:0016567 - protein ubiquitination (biological process)
GO:0016021 - integral component of membrane (cellular component)
GO:0016740 - transferase activity (molecular function)
InterPro domainsIPR001841 - Zinc finger, RING-type
IPR013083 - Zinc finger, RING/FYVE/PHD-type
IPR044289 - RING-H2 finger protein ATL67/ATL68/ATL70


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6583431.1 RING-H2 finger protein ATL5, partial [Cucurbita argyrosperma subsp. sororia]3.0e-1756.79Show/hide
Query:  EEGSMSVTTTAAYKDMMMTKKTTITTEETGDSVCAICIEGFKEEHICRVVDHCGHFFHKDCVDQWLAIKNCCPLCRCLVHV
        EE + S+ T  AYKD+  T+      E   D  CAICIEGF+EE IC V+D CGH FHK C+DQWL I++ CPLCRCLV V
Subjt:  EEGSMSVTTTAAYKDMMMTKKTTITTEETGDSVCAICIEGFKEEHICRVVDHCGHFFHKDCVDQWLAIKNCCPLCRCLVHV

KAG7019192.1 E3 ubiquitin-protein ligase ATL42, partial [Cucurbita argyrosperma subsp. argyrosperma]5.2e-1755.56Show/hide
Query:  EEGSMSVTTTAAYKDMMMTKKTTITTEETGDSVCAICIEGFKEEHICRVVDHCGHFFHKDCVDQWLAIKNCCPLCRCLVHV
        EE + S+ T  AYKD+  T+      E   D  CAICIEGF+EE +C V+D CGH FHK C+DQWL I++ CPLCRCLV V
Subjt:  EEGSMSVTTTAAYKDMMMTKKTTITTEETGDSVCAICIEGFKEEHICRVVDHCGHFFHKDCVDQWLAIKNCCPLCRCLVHV

XP_022964751.1 RING-H2 finger protein ATL64-like [Cucurbita moschata]3.3e-1653.09Show/hide
Query:  EEGSMSVTTTAAYKDMMMTKKTTITTEETGDSVCAICIEGFKEEHICRVVDHCGHFFHKDCVDQWLAIKNCCPLCRCLVHV
        EE + S+ T  AY+D+  T++  +      D  CAICIEGF+EE IC V+D CGH FHK C+DQWL I + CPLCRCL+ V
Subjt:  EEGSMSVTTTAAYKDMMMTKKTTITTEETGDSVCAICIEGFKEEHICRVVDHCGHFFHKDCVDQWLAIKNCCPLCRCLVHV

XP_022970384.1 RING-H2 finger protein ATL64-like [Cucurbita maxima]9.7e-1655.56Show/hide
Query:  EEGSMSVTTTAAYKDMMMTKKTTITTEETGDSVCAICIEGFKEEHICRVVDHCGHFFHKDCVDQWLAIKNCCPLCRCLVHV
        EE + S+ T  AY+D+  TK      E   D  CAICIEGF+EE IC VVD C H FHK C+D+WL I + CPLCRCLV V
Subjt:  EEGSMSVTTTAAYKDMMMTKKTTITTEETGDSVCAICIEGFKEEHICRVVDHCGHFFHKDCVDQWLAIKNCCPLCRCLVHV

XP_023520574.1 RING-H2 finger protein ATL64-like [Cucurbita pepo subsp. pepo]2.3e-1756.79Show/hide
Query:  EEGSMSVTTTAAYKDMMMTKKTTITTEETGDSVCAICIEGFKEEHICRVVDHCGHFFHKDCVDQWLAIKNCCPLCRCLVHV
        EE + S+ T  AYKD+  T+      E   D  CAICIEGF+E+ IC V+D CGH FHK C+DQWL IK+ CPLCRCLV V
Subjt:  EEGSMSVTTTAAYKDMMMTKKTTITTEETGDSVCAICIEGFKEEHICRVVDHCGHFFHKDCVDQWLAIKNCCPLCRCLVHV

TrEMBL top hitse value%identityAlignment
A0A5A7VMH1 RING-H2 finger protein ATL52-like1.7e-1343.43Show/hide
Query:  LELIVQTCLEFLDEEEGSMSVTTTAAYKD---MMMTKKTTITTEETGDS--VCAICIEGFKEEHICRVVDHCGHFFHKDCVDQWLAIKNCCPLCRCLVH
        ++L+ QT  E + + + +     T   ++    +MT    +   E G S   CAICIE F++E IC VV+ CGH FH+DC+DQWL I++ CPLCRCLVH
Subjt:  LELIVQTCLEFLDEEEGSMSVTTTAAYKD---MMMTKKTTITTEETGDS--VCAICIEGFKEEHICRVVDHCGHFFHKDCVDQWLAIKNCCPLCRCLVH

A0A5D3BE50 RING-type E3 ubiquitin transferase8.3e-1342.42Show/hide
Query:  LELIVQTCLEFLDEEEGSMSVTTTAAYKD---MMMTKKTTITTEETGDS--VCAICIEGFKEEHICRVVDHCGHFFHKDCVDQWLAIKNCCPLCRCLVH
        ++L+ QT  E + + + +     T   ++    +M     +   E G S   CAICIE F++E IC VV+ CGH FH+DC+DQWL I++ CPLCRCLVH
Subjt:  LELIVQTCLEFLDEEEGSMSVTTTAAYKD---MMMTKKTTITTEETGDS--VCAICIEGFKEEHICRVVDHCGHFFHKDCVDQWLAIKNCCPLCRCLVH

A0A6J1DYV0 E3 ubiquitin-protein ligase RING1-like9.8e-1460.32Show/hide
Query:  TKKTTITTEETGDS--VCAICIEGFKEEHICRVVDHCGHFFHKDCVDQWLAIKNCCPLCRCLV
        T    I  EE  DS   CAIC EGF+E+ +CRV++ CGHFFHKDCVDQWL ++  CPLCRC V
Subjt:  TKKTTITTEETGDS--VCAICIEGFKEEHICRVVDHCGHFFHKDCVDQWLAIKNCCPLCRCLV

A0A6J1HJU0 RING-type E3 ubiquitin transferase1.6e-1653.09Show/hide
Query:  EEGSMSVTTTAAYKDMMMTKKTTITTEETGDSVCAICIEGFKEEHICRVVDHCGHFFHKDCVDQWLAIKNCCPLCRCLVHV
        EE + S+ T  AY+D+  T++  +      D  CAICIEGF+EE IC V+D CGH FHK C+DQWL I + CPLCRCL+ V
Subjt:  EEGSMSVTTTAAYKDMMMTKKTTITTEETGDSVCAICIEGFKEEHICRVVDHCGHFFHKDCVDQWLAIKNCCPLCRCLVHV

A0A6J1I5C3 RING-type E3 ubiquitin transferase4.7e-1655.56Show/hide
Query:  EEGSMSVTTTAAYKDMMMTKKTTITTEETGDSVCAICIEGFKEEHICRVVDHCGHFFHKDCVDQWLAIKNCCPLCRCLVHV
        EE + S+ T  AY+D+  TK      E   D  CAICIEGF+EE IC VVD C H FHK C+D+WL I + CPLCRCLV V
Subjt:  EEGSMSVTTTAAYKDMMMTKKTTITTEETGDSVCAICIEGFKEEHICRVVDHCGHFFHKDCVDQWLAIKNCCPLCRCLVHV

SwissProt top hitse value%identityAlignment
Q8AWW4 E3 ubiquitin-protein ligase RNF1289.2e-0950Show/hide
Query:  GDSVCAICIEGFKEEHICRVVDHCGHFFHKDCVDQWLAIKNCCPLCRC
        GDS CA+CIE +K   + R++  C HFFHK+C+D WL     CP+C+C
Subjt:  GDSVCAICIEGFKEEHICRVVDHCGHFFHKDCVDQWLAIKNCCPLCRC

Q9M0C3 RING-H2 finger protein ATL143.2e-0943.64Show/hide
Query:  TEETGDSVCAICIEGFKEEHICRVVDHCGHFFHKDCVDQWLAIKNCCPLCRCLVH
        + E G   C +CI+GF++   CR +  CGH FH+ CVD WL   + CP+CR  V+
Subjt:  TEETGDSVCAICIEGFKEEHICRVVDHCGHFFHKDCVDQWLAIKNCCPLCRCLVH

Q9SJJ7 RING-H2 finger protein ATL579.2e-0953.49Show/hide
Query:  CAICIEGFKEEHICRVVDHCGHFFHKDCVDQWLAIKNCCPLCR
        C IC+  F+E    +V+ HCGH FH DCVD WL+    CPLCR
Subjt:  CAICIEGFKEEHICRVVDHCGHFFHKDCVDQWLAIKNCCPLCR

Q9SRM0 RING-H2 finger protein ATL662.0e-0841.07Show/hide
Query:  EETGDSVCAICIEGFKEEHICRVVDHCGHFFHKDCVDQWLAIKNCCPLCRCLVHVE
        EE  +  C IC+ GF+E    +V+  C H +H +CVD+WL  ++ CPLCR  + V+
Subjt:  EETGDSVCAICIEGFKEEHICRVVDHCGHFFHKDCVDQWLAIKNCCPLCRCLVHVE

Q9ZV51 RING-H2 finger protein ATL561.6e-0843.14Show/hide
Query:  DSVCAICIEGFKEEHICRVVDHCGHFFHKDCVDQWLAIKNCCPLCRCLVHV
        +S C +C +GF++   CR +  CGH FH+ CVD WL   + CP+CR  V +
Subjt:  DSVCAICIEGFKEEHICRVVDHCGHFFHKDCVDQWLAIKNCCPLCRCLVHV

Arabidopsis top hitse value%identityAlignment
AT2G18670.1 RING/U-box superfamily protein1.1e-0943.14Show/hide
Query:  DSVCAICIEGFKEEHICRVVDHCGHFFHKDCVDQWLAIKNCCPLCRCLVHV
        +S C +C +GF++   CR +  CGH FH+ CVD WL   + CP+CR  V +
Subjt:  DSVCAICIEGFKEEHICRVVDHCGHFFHKDCVDQWLAIKNCCPLCRCLVHV

AT2G27940.1 RING/U-box superfamily protein6.5e-1053.49Show/hide
Query:  CAICIEGFKEEHICRVVDHCGHFFHKDCVDQWLAIKNCCPLCR
        C IC+  F+E    +V+ HCGH FH DCVD WL+    CPLCR
Subjt:  CAICIEGFKEEHICRVVDHCGHFFHKDCVDQWLAIKNCCPLCR

AT3G11110.1 RING/U-box superfamily protein1.5e-0941.07Show/hide
Query:  EETGDSVCAICIEGFKEEHICRVVDHCGHFFHKDCVDQWLAIKNCCPLCRCLVHVE
        EE  +  C IC+ GF+E    +V+  C H +H +CVD+WL  ++ CPLCR  + V+
Subjt:  EETGDSVCAICIEGFKEEHICRVVDHCGHFFHKDCVDQWLAIKNCCPLCRCLVHVE

AT4G30370.1 RING/U-box superfamily protein2.2e-1043.64Show/hide
Query:  TEETGDSVCAICIEGFKEEHICRVVDHCGHFFHKDCVDQWLAIKNCCPLCRCLVH
        + E G   C +CI+GF++   CR +  CGH FH+ CVD WL   + CP+CR  V+
Subjt:  TEETGDSVCAICIEGFKEEHICRVVDHCGHFFHKDCVDQWLAIKNCCPLCRCLVH

AT5G37200.1 RING/U-box superfamily protein1.5e-0947.46Show/hide
Query:  ETGDSVCAICIEGFKEEH--ICRVVDHCGHFFHKDCVDQWLAIKNCCPLCRCLVHVERN
        E  D  C+ICIE F E H  I RV D C H FH+ C+ +WL ++N CPLCR + + E +
Subjt:  ETGDSVCAICIEGFKEEH--ICRVVDHCGHFFHKDCVDQWLAIKNCCPLCRCLVHVERN


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTTTTGCTTATATGGCTTTTGTGTGAACGTAATAGACTCAAAGAAATTATGTTAGAACTCATAGTACAAACTTGCCTTGAGTTTCTTGACGAAGAAGAAGGTTCGAT
GTCCGTCACCACGACGGCCGCATACAAAGACATGATGATGACAAAGAAGACGACGATAACCACGGAGGAAACTGGCGATTCCGTGTGTGCGATATGCATCGAGGGATTTA
AGGAGGAACATATTTGCAGAGTTGTTGACCATTGCGGCCATTTTTTTCATAAGGACTGTGTTGATCAGTGGCTCGCCATTAAAAACTGTTGTCCGTTGTGCCGTTGTTTG
GTTCATGTCGAGCGGAATGTTTTTTTACTAGATTTATAG
mRNA sequenceShow/hide mRNA sequence
ATGTTTTTGCTTATATGGCTTTTGTGTGAACGTAATAGACTCAAAGAAATTATGTTAGAACTCATAGTACAAACTTGCCTTGAGTTTCTTGACGAAGAAGAAGGTTCGAT
GTCCGTCACCACGACGGCCGCATACAAAGACATGATGATGACAAAGAAGACGACGATAACCACGGAGGAAACTGGCGATTCCGTGTGTGCGATATGCATCGAGGGATTTA
AGGAGGAACATATTTGCAGAGTTGTTGACCATTGCGGCCATTTTTTTCATAAGGACTGTGTTGATCAGTGGCTCGCCATTAAAAACTGTTGTCCGTTGTGCCGTTGTTTG
GTTCATGTCGAGCGGAATGTTTTTTTACTAGATTTATAG
Protein sequenceShow/hide protein sequence
MFLLIWLLCERNRLKEIMLELIVQTCLEFLDEEEGSMSVTTTAAYKDMMMTKKTTITTEETGDSVCAICIEGFKEEHICRVVDHCGHFFHKDCVDQWLAIKNCCPLCRCL
VHVERNVFLLDL