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Sed0002660 (gene) of Chayote v1 genome

Gene IDSed0002660
OrganismSechium edule (Chayote v1)
DescriptionRING-type domain-containing protein
Genome locationLG04:4468757..4469173
RNA-Seq ExpressionSed0002660
SyntenySed0002660
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001841 - Zinc finger, RING-type
IPR013083 - Zinc finger, RING/FYVE/PHD-type
IPR044249 - Probable E3 ubiquitin-protein ligase XERICO-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6601543.1 putative E3 ubiquitin-protein ligase XERICO, partial [Cucurbita argyrosperma subsp. sororia]3.3e-5279.72Show/hide
Query:  MGLSNFLPTAEGVLVLSVLVMNSVMSMPFLKNLVRSVMQMVS-----SSSEEEYDWESGRERRISNTQFKSLSQSFINGGTENENGSVSSCVAVMAECCV
        MGLSNF P+AEGVL+L VLVMN+VMSM FLKNLVRSV+QM+S     SSSEEE DWE+GRERRIS TQFKSL QSF NGGT  E GS S C  VMAECCV
Subjt:  MGLSNFLPTAEGVLVLSVLVMNSVMSMPFLKNLVRSVMQMVS-----SSSEEEYDWESGRERRISNTQFKSLSQSFINGGTENENGSVSSCVAVMAECCV

Query:  CLCGFEADEEVSELSCKHFFHKVCIFKWFDNNHITCPLCRSIE
        CLCGFEADEEVSELSCKHFFHK C+ KWFDN HITCPLCRSIE
Subjt:  CLCGFEADEEVSELSCKHFFHKVCIFKWFDNNHITCPLCRSIE

XP_022957080.1 probable E3 ubiquitin-protein ligase XERICO [Cucurbita moschata]3.3e-5279.72Show/hide
Query:  MGLSNFLPTAEGVLVLSVLVMNSVMSMPFLKNLVRSVMQMVS-----SSSEEEYDWESGRERRISNTQFKSLSQSFINGGTENENGSVSSCVAVMAECCV
        MGLSNF P+AEGVL+L VLVMN+VMSM FLKNLVRSV+QM+S     SSSEEE DWE+GRERRIS TQFKSL QSF NGGT  E GS S C  VMAECCV
Subjt:  MGLSNFLPTAEGVLVLSVLVMNSVMSMPFLKNLVRSVMQMVS-----SSSEEEYDWESGRERRISNTQFKSLSQSFINGGTENENGSVSSCVAVMAECCV

Query:  CLCGFEADEEVSELSCKHFFHKVCIFKWFDNNHITCPLCRSIE
        CLCGFEADEEVSELSCKHFFHK C+ KWFDN HITCPLCRSIE
Subjt:  CLCGFEADEEVSELSCKHFFHKVCIFKWFDNNHITCPLCRSIE

XP_022984317.1 probable E3 ubiquitin-protein ligase XERICO [Cucurbita maxima]1.5e-5279.02Show/hide
Query:  MGLSNFLPTAEGVLVLSVLVMNSVMSMPFLKNLVRSVMQMVS-----SSSEEEYDWESGRERRISNTQFKSLSQSFINGGTENENGSVSSCVAVMAECCV
        MGLSNF P+AEGVL+L VLVMN+VMSM FLKNLVRSV+QM+S     SSSEEE+DWE+GRERRIS TQFKSL QSF NGGT  E GS S C  +MAECCV
Subjt:  MGLSNFLPTAEGVLVLSVLVMNSVMSMPFLKNLVRSVMQMVS-----SSSEEEYDWESGRERRISNTQFKSLSQSFINGGTENENGSVSSCVAVMAECCV

Query:  CLCGFEADEEVSELSCKHFFHKVCIFKWFDNNHITCPLCRSIE
        CLCGFEADEEVSELSCKHFFHK C+ KWFDN HITCPLCRSIE
Subjt:  CLCGFEADEEVSELSCKHFFHKVCIFKWFDNNHITCPLCRSIE

XP_023523084.1 probable E3 ubiquitin-protein ligase XERICO [Cucurbita pepo subsp. pepo]3.3e-5279.02Show/hide
Query:  MGLSNFLPTAEGVLVLSVLVMNSVMSMPFLKNLVRSVMQMVS-----SSSEEEYDWESGRERRISNTQFKSLSQSFINGGTENENGSVSSCVAVMAECCV
        MGLSNF P+AEGVL+L VLVMN+VMSM FLKNLVRSV+QM+S     SSSEEE+DWE+GRERRIS TQFKSL QSF NGGT  E GS S C   MAECCV
Subjt:  MGLSNFLPTAEGVLVLSVLVMNSVMSMPFLKNLVRSVMQMVS-----SSSEEEYDWESGRERRISNTQFKSLSQSFINGGTENENGSVSSCVAVMAECCV

Query:  CLCGFEADEEVSELSCKHFFHKVCIFKWFDNNHITCPLCRSIE
        CLCGFEADEEVSELSCKHFFHK C+ KWFDN HITCPLCRSIE
Subjt:  CLCGFEADEEVSELSCKHFFHKVCIFKWFDNNHITCPLCRSIE

XP_038892017.1 probable E3 ubiquitin-protein ligase XERICO [Benincasa hispida]7.6e-4977.78Show/hide
Query:  MGLSNFLPTAEGVLVLSVLVMNSVMSMPFLKNLVRSVMQMVS-----SSSEEEYDWESGRERRISNTQFKSLSQSFINGGTENENGSVSSCVAVMAECCV
        MGLSNF P+AEGVL+L VLVMN+VMSM FLKN VRSV+QM+S     SSSEEEYDWE+GRERRIS TQFKSL QSF NG TE+   SVS C  VMAECCV
Subjt:  MGLSNFLPTAEGVLVLSVLVMNSVMSMPFLKNLVRSVMQMVS-----SSSEEEYDWESGRERRISNTQFKSLSQSFINGGTENENGSVSSCVAVMAECCV

Query:  CLCGFEADEEVSELSCKHFFHKVCIFKWFDNN-HITCPLCRSIE
        CLCGFEADEEVSELSCKH+FHK C+ KWFDNN H TCPLCRSIE
Subjt:  CLCGFEADEEVSELSCKHFFHKVCIFKWFDNN-HITCPLCRSIE

TrEMBL top hitse value%identityAlignment
A0A0A0KTI8 RING-type domain-containing protein5.3e-4876.22Show/hide
Query:  MGLSNFLPTAEGVLVLSVLVMNSVMSMPFLKNLVRSVMQMV-----SSSSEEEYDWESGRERRISNTQFKSLSQSFINGGTENENGSVSSCVAVMAECCV
        MGLSNF P+AEGVL+L VLVMN+VMSM FLKN VRSV+QM+     SSSSEEEYDWE+ RERRIS TQFK+L QSF NG TE E   VS C  VMAECCV
Subjt:  MGLSNFLPTAEGVLVLSVLVMNSVMSMPFLKNLVRSVMQMV-----SSSSEEEYDWESGRERRISNTQFKSLSQSFINGGTENENGSVSSCVAVMAECCV

Query:  CLCGFEADEEVSELSCKHFFHKVCIFKWFDNNHITCPLCRSIE
        CLC FEADEEVSELSCKHFFHK C+ KWFDN H TCPLCRSIE
Subjt:  CLCGFEADEEVSELSCKHFFHKVCIFKWFDNNHITCPLCRSIE

A0A5A7SYA9 Putative E3 ubiquitin-protein ligase XERICO2.4e-4876.22Show/hide
Query:  MGLSNFLPTAEGVLVLSVLVMNSVMSMPFLKNLVRSVMQMV-----SSSSEEEYDWESGRERRISNTQFKSLSQSFINGGTENENGSVSSCVAVMAECCV
        MGLSNF P+AEGVL+L VLVM++VMSM FLKN VRSV+QM+     SSSSEEEYDWE+GRERRIS TQFK+L QSF NG TE E   VS C  VMAECCV
Subjt:  MGLSNFLPTAEGVLVLSVLVMNSVMSMPFLKNLVRSVMQMV-----SSSSEEEYDWESGRERRISNTQFKSLSQSFINGGTENENGSVSSCVAVMAECCV

Query:  CLCGFEADEEVSELSCKHFFHKVCIFKWFDNNHITCPLCRSIE
        CLC FEADEEVSELSCKHFFHK C+ KWFDN H TCPLCRSIE
Subjt:  CLCGFEADEEVSELSCKHFFHKVCIFKWFDNNHITCPLCRSIE

A0A6J1DFU2 probable E3 ubiquitin-protein ligase XERICO5.3e-4875.17Show/hide
Query:  MGLSNFLPTAEGVLVLSVLVMNSVMSMPFLKNLVRSVMQMVS-------SSSEEEYDWESGRERRISNTQFKSLSQSFINGGTENENGSVSSCVAVMAEC
        MGLSNF P AEGVL+L VL+MN+VMSM FLK+LVRSV+QM+S       SSSEEEYD E+ RERRIS TQFKSL QSF NGGT  E+GS S C+A  AEC
Subjt:  MGLSNFLPTAEGVLVLSVLVMNSVMSMPFLKNLVRSVMQMVS-------SSSEEEYDWESGRERRISNTQFKSLSQSFINGGTENENGSVSSCVAVMAEC

Query:  CVCLCGFEADEEVSELSCKHFFHKVCIFKWFDNNHITCPLCRSIE
        CVCLCGFEADEEVSELSCKHFFHK C+ KWFDN HITCPLCRSI+
Subjt:  CVCLCGFEADEEVSELSCKHFFHKVCIFKWFDNNHITCPLCRSIE

A0A6J1GZI7 probable E3 ubiquitin-protein ligase XERICO1.6e-5279.72Show/hide
Query:  MGLSNFLPTAEGVLVLSVLVMNSVMSMPFLKNLVRSVMQMVS-----SSSEEEYDWESGRERRISNTQFKSLSQSFINGGTENENGSVSSCVAVMAECCV
        MGLSNF P+AEGVL+L VLVMN+VMSM FLKNLVRSV+QM+S     SSSEEE DWE+GRERRIS TQFKSL QSF NGGT  E GS S C  VMAECCV
Subjt:  MGLSNFLPTAEGVLVLSVLVMNSVMSMPFLKNLVRSVMQMVS-----SSSEEEYDWESGRERRISNTQFKSLSQSFINGGTENENGSVSSCVAVMAECCV

Query:  CLCGFEADEEVSELSCKHFFHKVCIFKWFDNNHITCPLCRSIE
        CLCGFEADEEVSELSCKHFFHK C+ KWFDN HITCPLCRSIE
Subjt:  CLCGFEADEEVSELSCKHFFHKVCIFKWFDNNHITCPLCRSIE

A0A6J1J1V9 probable E3 ubiquitin-protein ligase XERICO7.1e-5379.02Show/hide
Query:  MGLSNFLPTAEGVLVLSVLVMNSVMSMPFLKNLVRSVMQMVS-----SSSEEEYDWESGRERRISNTQFKSLSQSFINGGTENENGSVSSCVAVMAECCV
        MGLSNF P+AEGVL+L VLVMN+VMSM FLKNLVRSV+QM+S     SSSEEE+DWE+GRERRIS TQFKSL QSF NGGT  E GS S C  +MAECCV
Subjt:  MGLSNFLPTAEGVLVLSVLVMNSVMSMPFLKNLVRSVMQMVS-----SSSEEEYDWESGRERRISNTQFKSLSQSFINGGTENENGSVSSCVAVMAECCV

Query:  CLCGFEADEEVSELSCKHFFHKVCIFKWFDNNHITCPLCRSIE
        CLCGFEADEEVSELSCKHFFHK C+ KWFDN HITCPLCRSIE
Subjt:  CLCGFEADEEVSELSCKHFFHKVCIFKWFDNNHITCPLCRSIE

SwissProt top hitse value%identityAlignment
Q93Z92 E3 ubiquitin-protein ligase At4g116801.1e-0753.33Show/hide
Query:  AECCVCLCGFEADEEVSELSCKHFFHKVCIFKWFDNNHITCPLCR
        AECC+CLC +E   E+ EL C H FH  CI KW   N   CPLC+
Subjt:  AECCVCLCGFEADEEVSELSCKHFFHKVCIFKWFDNNHITCPLCR

Q9LN71 E3 ubiquitin-protein ligase At1g127609.7e-0751.11Show/hide
Query:  AECCVCLCGFEADEEVSELSCKHFFHKVCIFKWFDNNHITCPLCR
        AECC+CL  +E   E+ EL C H FH  C+ KW   N  TCPLC+
Subjt:  AECCVCLCGFEADEEVSELSCKHFFHKVCIFKWFDNNHITCPLCR

Q9SI09 Probable E3 ubiquitin-protein ligase XERICO5.9e-1234.46Show/hide
Query:  MGLSNFLPTAEGVLVLSVLVMNSVMSMPFLKNLVRSVMQMV------SSSSEEEYDWESGRERRISNTQFK-----SLSQSFINGGTENENGSVSSC-VA
        MGLS+    +EG  +L V+++N+ +S+  +K +VRS + +V      SSSS       S       +  F+     S  + F N        S+  C   
Subjt:  MGLSNFLPTAEGVLVLSVLVMNSVMSMPFLKNLVRSVMQMV------SSSSEEEYDWESGRERRISNTQFK-----SLSQSFINGGTENENGSVSSC-VA

Query:  VMAECCVCLCGFEADEEVSELSCKHFFHKVCIFKWFDNNHITCPLCRS
           EC VCL  F+ D E+++L C H FHK C+ KW D  +ITCPLCR+
Subjt:  VMAECCVCLCGFEADEEVSELSCKHFFHKVCIFKWFDNNHITCPLCRS

Q9XF92 Brassinosteroid-responsive RING protein 14.4e-0746.67Show/hide
Query:  CCVCLCGFEADEEVSEL-SCKHFFHKVCIFKWFDNNHITCPLCRS
        C VCL  FE ++E+  L +C+H FH+ C+ +W D++  TCPLCR+
Subjt:  CCVCLCGFEADEEVSEL-SCKHFFHKVCIFKWFDNNHITCPLCRS

Q9ZU51 E3 ubiquitin-protein ligase RHA2B5.7e-0745.65Show/hide
Query:  AECCVCLCGFEADEEVSELSCKHFFHKVCIFKWFDNNHITCPLCRS
        ++C VCL   +  EEV +L C+H FHK C+  W  + +  CPLCRS
Subjt:  AECCVCLCGFEADEEVSELSCKHFFHKVCIFKWFDNNHITCPLCRS

Arabidopsis top hitse value%identityAlignment
AT1G24580.1 RING/U-box superfamily protein1.9e-2652.85Show/hide
Query:  MNSVMSMPFLKNLVRSVMQMVSSSSEEEYDWESGRE-----RRISNTQFKSLSQSFINGGTENENGSVSSCVAVMAECCVCLCGFEADEEVSEL-SCKHF
        MN+V+S+  LKN+VRSV Q+V+S +E   + +   E     RRIS TQFKSL ++      E E G          ECCVCLCGF+ +EEVSEL SCKHF
Subjt:  MNSVMSMPFLKNLVRSVMQMVSSSSEEEYDWESGRE-----RRISNTQFKSLSQSFINGGTENENGSVSSCVAVMAECCVCLCGFEADEEVSEL-SCKHF

Query:  FHKVCIFKWFDNNHITCPLCRSI
        FH+ C+  WF NNH TCPLCRSI
Subjt:  FHKVCIFKWFDNNHITCPLCRSI

AT1G67856.1 RING/U-box superfamily protein1.1e-2951.03Show/hide
Query:  MGLSNFLPTAEGVLVLSVLVMNSVMSMPFLKNLVRSVMQMVSS------SSEEEYDWE-SGRERRISNTQFKSLSQSFINGGTENENGSVSSCVAVMAEC
        MG+S++   +EG  V+ +LVMN+V+S+  +KN+VRSV+ MVSS      + E++ D E S R RRIS T F+SL +   N G+ NE  ++        +C
Subjt:  MGLSNFLPTAEGVLVLSVLVMNSVMSMPFLKNLVRSVMQMVSS------SSEEEYDWE-SGRERRISNTQFKSLSQSFINGGTENENGSVSSCVAVMAEC

Query:  CVCLCGFEADEEVSEL-SCKHFFHKVCIFKWFDNNHITCPLCRSI
        CVCLCGF+ +EEVSEL SCKH+FH  C+ KWF NNH TCPLCRSI
Subjt:  CVCLCGFEADEEVSEL-SCKHFFHKVCIFKWFDNNHITCPLCRSI

AT2G04240.1 RING/U-box superfamily protein4.2e-1334.46Show/hide
Query:  MGLSNFLPTAEGVLVLSVLVMNSVMSMPFLKNLVRSVMQMV------SSSSEEEYDWESGRERRISNTQFK-----SLSQSFINGGTENENGSVSSC-VA
        MGLS+    +EG  +L V+++N+ +S+  +K +VRS + +V      SSSS       S       +  F+     S  + F N        S+  C   
Subjt:  MGLSNFLPTAEGVLVLSVLVMNSVMSMPFLKNLVRSVMQMV------SSSSEEEYDWESGRERRISNTQFK-----SLSQSFINGGTENENGSVSSC-VA

Query:  VMAECCVCLCGFEADEEVSELSCKHFFHKVCIFKWFDNNHITCPLCRS
           EC VCL  F+ D E+++L C H FHK C+ KW D  +ITCPLCR+
Subjt:  VMAECCVCLCGFEADEEVSELSCKHFFHKVCIFKWFDNNHITCPLCRS

AT2G04240.2 RING/U-box superfamily protein4.2e-1334.46Show/hide
Query:  MGLSNFLPTAEGVLVLSVLVMNSVMSMPFLKNLVRSVMQMV------SSSSEEEYDWESGRERRISNTQFK-----SLSQSFINGGTENENGSVSSC-VA
        MGLS+    +EG  +L V+++N+ +S+  +K +VRS + +V      SSSS       S       +  F+     S  + F N        S+  C   
Subjt:  MGLSNFLPTAEGVLVLSVLVMNSVMSMPFLKNLVRSVMQMV------SSSSEEEYDWESGRERRISNTQFK-----SLSQSFINGGTENENGSVSSC-VA

Query:  VMAECCVCLCGFEADEEVSELSCKHFFHKVCIFKWFDNNHITCPLCRS
           EC VCL  F+ D E+++L C H FHK C+ KW D  +ITCPLCR+
Subjt:  VMAECCVCLCGFEADEEVSELSCKHFFHKVCIFKWFDNNHITCPLCRS

AT4G32600.1 RING/U-box superfamily protein2.5e-1041.77Show/hide
Query:  KSLSQSFINGGTENENGSVSSCV----AVMAE---CCVCLCGFEADEEVSELSCKHFFHKVCIFKWFDNNHITCPLCRS
        KS S    NG + +E G V++      A+  E   CC+CL  +  +EE+ EL C HFFHK C+ KW   N  +CPLC+S
Subjt:  KSLSQSFINGGTENENGSVSSCV----AVMAE---CCVCLCGFEADEEVSELSCKHFFHKVCIFKWFDNNHITCPLCRS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGTCTCTCAAATTTCCTCCCAACAGCTGAAGGAGTGTTGGTGTTGTCAGTGCTGGTGATGAACTCAGTAATGTCCATGCCTTTTTTGAAGAACTTGGTGAGATCTGT
GATGCAAATGGTGAGTTCAAGTTCTGAGGAAGAATATGATTGGGAAAGTGGAAGAGAAAGAAGAATCTCGAATACACAGTTCAAATCCTTGAGCCAAAGCTTCATCAATG
GTGGAACAGAGAATGAAAATGGCTCTGTTTCAAGTTGTGTTGCTGTTATGGCTGAGTGCTGTGTTTGTCTTTGTGGGTTTGAAGCTGATGAGGAAGTTAGTGAGTTGTCT
TGTAAGCATTTTTTTCATAAAGTTTGTATTTTTAAGTGGTTTGATAATAACCATATCACTTGCCCTCTCTGTCGCTCCATTGAGTAA
mRNA sequenceShow/hide mRNA sequence
ATGGGTCTCTCAAATTTCCTCCCAACAGCTGAAGGAGTGTTGGTGTTGTCAGTGCTGGTGATGAACTCAGTAATGTCCATGCCTTTTTTGAAGAACTTGGTGAGATCTGT
GATGCAAATGGTGAGTTCAAGTTCTGAGGAAGAATATGATTGGGAAAGTGGAAGAGAAAGAAGAATCTCGAATACACAGTTCAAATCCTTGAGCCAAAGCTTCATCAATG
GTGGAACAGAGAATGAAAATGGCTCTGTTTCAAGTTGTGTTGCTGTTATGGCTGAGTGCTGTGTTTGTCTTTGTGGGTTTGAAGCTGATGAGGAAGTTAGTGAGTTGTCT
TGTAAGCATTTTTTTCATAAAGTTTGTATTTTTAAGTGGTTTGATAATAACCATATCACTTGCCCTCTCTGTCGCTCCATTGAGTAA
Protein sequenceShow/hide protein sequence
MGLSNFLPTAEGVLVLSVLVMNSVMSMPFLKNLVRSVMQMVSSSSEEEYDWESGRERRISNTQFKSLSQSFINGGTENENGSVSSCVAVMAECCVCLCGFEADEEVSELS
CKHFFHKVCIFKWFDNNHITCPLCRSIE