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Sed0002663 (gene) of Chayote v1 genome

Gene IDSed0002663
OrganismSechium edule (Chayote v1)
DescriptionRNA polymerase II transcriptional coactivator KIWI-like
Genome locationLG03:47351452..47357608
RNA-Seq ExpressionSed0002663
SyntenySed0002663
Gene Ontology termsGO:0060261 - positive regulation of transcription initiation from RNA polymerase II promoter (biological process)
GO:0005634 - nucleus (cellular component)
GO:0005667 - transcription factor complex (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0003713 - transcription coactivator activity (molecular function)
InterPro domainsIPR003173 - Transcriptional coactivator p15 (PC4), C-terminal
IPR009044 - ssDNA-binding transcriptional regulator
IPR045125 - RNA polymerase II transcriptional coactivator Sub1/Tcp4-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6603408.1 RNA polymerase II transcriptional coactivator KIWI, partial [Cucurbita argyrosperma subsp. sororia]1.6e-4390.1Show/hide
Query:  MSAKGKRKDDEDHASERDAPPKKTLKADSDETDEIVVCEISKNRRVMVRNWQGKIVVDIREFYVKDGKQMPGKKGISLSLDQWNVLRNHVEEIEKAVKEN
        MSA+GKRKDDEDH SE DAPPKKT + DSDETDEIVVCEISKNRRVMVRNWQGKIVVDIREFYVKDGKQMPGKKGISLSLDQWNVLRNHV+EI+KAV EN
Subjt:  MSAKGKRKDDEDHASERDAPPKKTLKADSDETDEIVVCEISKNRRVMVRNWQGKIVVDIREFYVKDGKQMPGKKGISLSLDQWNVLRNHVEEIEKAVKEN

Query:  A
        +
Subjt:  A

KAG7027581.1 RNA polymerase II transcriptional coactivator KIWI [Cucurbita argyrosperma subsp. argyrosperma]9.1e-4491.09Show/hide
Query:  MSAKGKRKDDEDHASERDAPPKKTLKADSDETDEIVVCEISKNRRVMVRNWQGKIVVDIREFYVKDGKQMPGKKGISLSLDQWNVLRNHVEEIEKAVKEN
        MSA+GKRKDDEDHASE DAPPKKT K +SDETDEIVVCEISKNRRVMVRNWQGKIVVDIREFYVKDGK+MPGKKGISLSLDQWNVLRNHVEEI+KAV EN
Subjt:  MSAKGKRKDDEDHASERDAPPKKTLKADSDETDEIVVCEISKNRRVMVRNWQGKIVVDIREFYVKDGKQMPGKKGISLSLDQWNVLRNHVEEIEKAVKEN

Query:  A
        +
Subjt:  A

XP_022149410.1 RNA polymerase II transcriptional coactivator KIWI-like isoform X1 [Momordica charantia]2.0e-4390.1Show/hide
Query:  MSAKGKRKDDEDHASERDAPPKKTLKADSDETDEIVVCEISKNRRVMVRNWQGKIVVDIREFYVKDGKQMPGKKGISLSLDQWNVLRNHVEEIEKAVKEN
        MSA+GKRKDD++HASE DAPPKKT K DSDETDEIVVCEISKNRRVMVRNWQGKIVVDIREFYVKDGKQMPGKKGISLS+DQWNVLRNHVEEI+KAV EN
Subjt:  MSAKGKRKDDEDHASERDAPPKKTLKADSDETDEIVVCEISKNRRVMVRNWQGKIVVDIREFYVKDGKQMPGKKGISLSLDQWNVLRNHVEEIEKAVKEN

Query:  A
        +
Subjt:  A

XP_022925285.1 RNA polymerase II transcriptional coactivator KIWI-like [Cucurbita moschata]2.4e-4492.08Show/hide
Query:  MSAKGKRKDDEDHASERDAPPKKTLKADSDETDEIVVCEISKNRRVMVRNWQGKIVVDIREFYVKDGKQMPGKKGISLSLDQWNVLRNHVEEIEKAVKEN
        MSA+GKRKDDEDHASE DAPPKKTLK DS+ETDEIVVCEISKNRRVMVRNWQGKIVVDIREFYVKDGK+MPGKKGISLSLDQWNVLRNHVEEI+KAV EN
Subjt:  MSAKGKRKDDEDHASERDAPPKKTLKADSDETDEIVVCEISKNRRVMVRNWQGKIVVDIREFYVKDGKQMPGKKGISLSLDQWNVLRNHVEEIEKAVKEN

Query:  A
        +
Subjt:  A

XP_023518433.1 RNA polymerase II transcriptional coactivator KIWI-like [Cucurbita pepo subsp. pepo]2.4e-4492.08Show/hide
Query:  MSAKGKRKDDEDHASERDAPPKKTLKADSDETDEIVVCEISKNRRVMVRNWQGKIVVDIREFYVKDGKQMPGKKGISLSLDQWNVLRNHVEEIEKAVKEN
        MSA+GKRKDDEDHASE DAPPKKT K DSDETDEIVVCEISKNRRVMVRNWQGKIVVDIREFYVKDGK+MPGKKGISLSLDQWNVLRNHVEEI+KAV EN
Subjt:  MSAKGKRKDDEDHASERDAPPKKTLKADSDETDEIVVCEISKNRRVMVRNWQGKIVVDIREFYVKDGKQMPGKKGISLSLDQWNVLRNHVEEIEKAVKEN

Query:  A
        +
Subjt:  A

TrEMBL top hitse value%identityAlignment
A0A6J1D5M3 RNA polymerase II transcriptional coactivator KIWI-like isoform X19.9e-4490.1Show/hide
Query:  MSAKGKRKDDEDHASERDAPPKKTLKADSDETDEIVVCEISKNRRVMVRNWQGKIVVDIREFYVKDGKQMPGKKGISLSLDQWNVLRNHVEEIEKAVKEN
        MSA+GKRKDD++HASE DAPPKKT K DSDETDEIVVCEISKNRRVMVRNWQGKIVVDIREFYVKDGKQMPGKKGISLS+DQWNVLRNHVEEI+KAV EN
Subjt:  MSAKGKRKDDEDHASERDAPPKKTLKADSDETDEIVVCEISKNRRVMVRNWQGKIVVDIREFYVKDGKQMPGKKGISLSLDQWNVLRNHVEEIEKAVKEN

Query:  A
        +
Subjt:  A

A0A6J1EHI0 RNA polymerase II transcriptional coactivator KIWI-like1.2e-4492.08Show/hide
Query:  MSAKGKRKDDEDHASERDAPPKKTLKADSDETDEIVVCEISKNRRVMVRNWQGKIVVDIREFYVKDGKQMPGKKGISLSLDQWNVLRNHVEEIEKAVKEN
        MSA+GKRKDDEDHASE DAPPKKTLK DS+ETDEIVVCEISKNRRVMVRNWQGKIVVDIREFYVKDGK+MPGKKGISLSLDQWNVLRNHVEEI+KAV EN
Subjt:  MSAKGKRKDDEDHASERDAPPKKTLKADSDETDEIVVCEISKNRRVMVRNWQGKIVVDIREFYVKDGKQMPGKKGISLSLDQWNVLRNHVEEIEKAVKEN

Query:  A
        +
Subjt:  A

A0A6J1EYI2 RNA polymerase II transcriptional coactivator KIWI-like isoform X13.7e-4389.11Show/hide
Query:  MSAKGKRKDDEDHASERDAPPKKTLKADSDETDEIVVCEISKNRRVMVRNWQGKIVVDIREFYVKDGKQMPGKKGISLSLDQWNVLRNHVEEIEKAVKEN
        MSA+GKRKDDEDH  E DAPPKKT + DSDETDEIVVCEISKNRRVMVRNWQGKIVVDIREFYVKDGKQMPGKKGISLSLDQWNVLRNHV+EI+KAV EN
Subjt:  MSAKGKRKDDEDHASERDAPPKKTLKADSDETDEIVVCEISKNRRVMVRNWQGKIVVDIREFYVKDGKQMPGKKGISLSLDQWNVLRNHVEEIEKAVKEN

Query:  A
        +
Subjt:  A

A0A6J1HRT2 RNA polymerase II transcriptional coactivator KIWI-like isoform X19.9e-4490.1Show/hide
Query:  MSAKGKRKDDEDHASERDAPPKKTLKADSDETDEIVVCEISKNRRVMVRNWQGKIVVDIREFYVKDGKQMPGKKGISLSLDQWNVLRNHVEEIEKAVKEN
        MSA+GKRKDDEDHASE DAPPKKT K DS+ETDEIVVCEISKNRRVMVRNWQGKIVVDIREFYVKDGK+MPGKKG SLSLDQWNVLRNHVEEI+KAV EN
Subjt:  MSAKGKRKDDEDHASERDAPPKKTLKADSDETDEIVVCEISKNRRVMVRNWQGKIVVDIREFYVKDGKQMPGKKGISLSLDQWNVLRNHVEEIEKAVKEN

Query:  A
        +
Subjt:  A

A0A6J1IRG1 RNA polymerase II transcriptional coactivator KIWI-like isoform X11.4e-4287.13Show/hide
Query:  MSAKGKRKDDEDHASERDAPPKKTLKADSDETDEIVVCEISKNRRVMVRNWQGKIVVDIREFYVKDGKQMPGKKGISLSLDQWNVLRNHVEEIEKAVKEN
        MSA+GKR+DDEDH SE DAPPKKT + DSDETDEIVVCEISKNR+V+VRNWQGKIVVDIREFYVKDGKQMPGKKGISLSLDQWNVLRNHV+EI+KAV EN
Subjt:  MSAKGKRKDDEDHASERDAPPKKTLKADSDETDEIVVCEISKNRRVMVRNWQGKIVVDIREFYVKDGKQMPGKKGISLSLDQWNVLRNHVEEIEKAVKEN

Query:  A
        +
Subjt:  A

SwissProt top hitse value%identityAlignment
O65154 RNA polymerase II transcriptional coactivator KIWI1.9e-3166.67Show/hide
Query:  MSAKGKRKDDE----DHASERDAPPKKTLKA--DSDETDEIVVCEISKNRRVMVRNWQGKIVVDIREFYVKDGKQMPGKKGISLSLDQWNVLRNHVEEIE
        MS++GKRKD++    D  SE  AP KK  K   DSD++D+IVVC ISKNRRV VRNW GKI +DIREFYVKDGK +PGKKGISLS+DQWN LRNH E+IE
Subjt:  MSAKGKRKDDE----DHASERDAPPKKTLKA--DSDETDEIVVCEISKNRRVMVRNWQGKIVVDIREFYVKDGKQMPGKKGISLSLDQWNVLRNHVEEIE

Query:  KAVKE
        KA+ +
Subjt:  KAVKE

O65155 RNA polymerase II transcriptional coactivator KELP1.1e-1242.86Show/hide
Query:  DETDEIVVCEISKNRRVMVRNWQGKIVVDIREFYVKDGKQMPGKKGISLSLDQWNVLRNHVEEIEKAVKE
        D+  ++++C +S  RRV ++ ++GK +V IRE+Y KDGK++P  KGISL+ +QW+  + ++  IE AVK+
Subjt:  DETDEIVVCEISKNRRVMVRNWQGKIVVDIREFYVKDGKQMPGKKGISLSLDQWNVLRNHVEEIEKAVKE

P11031 Activated RNA polymerase II transcriptional coactivator p159.0e-1043.55Show/hide
Query:  EISKNRRVMVRNWQGKIVVDIREFYV-KDGKQMPGKKGISLSLDQWNVLRNHVEEIEKAVKE
        +I K R V VR+++GKI++DIRE+++  +G+  PG+KGISL+++QW+ L+  + +I+ AV++
Subjt:  EISKNRRVMVRNWQGKIVVDIREFYV-KDGKQMPGKKGISLSLDQWNVLRNHVEEIEKAVKE

P53999 Activated RNA polymerase II transcriptional coactivator p155.8e-0941.94Show/hide
Query:  EISKNRRVMVRNWQGKIVVDIREFYV-KDGKQMPGKKGISLSLDQWNVLRNHVEEIEKAVKE
        +I K R V VR+++GK+++DIRE+++  +G+  PG+KGISL+ +QW+ L+  + +I+ AV++
Subjt:  EISKNRRVMVRNWQGKIVVDIREFYV-KDGKQMPGKKGISLSLDQWNVLRNHVEEIEKAVKE

Q63396 Activated RNA polymerase II transcriptional coactivator p159.0e-1043.55Show/hide
Query:  EISKNRRVMVRNWQGKIVVDIREFYV-KDGKQMPGKKGISLSLDQWNVLRNHVEEIEKAVKE
        +I K R V VR+++GKI++DIRE+++  +G+  PG+KGISL+++QW+ L+  + +I+ AV++
Subjt:  EISKNRRVMVRNWQGKIVVDIREFYV-KDGKQMPGKKGISLSLDQWNVLRNHVEEIEKAVKE

Arabidopsis top hitse value%identityAlignment
AT4G10920.1 transcriptional coactivator p15 (PC4) family protein (KELP)8.0e-1442.86Show/hide
Query:  DETDEIVVCEISKNRRVMVRNWQGKIVVDIREFYVKDGKQMPGKKGISLSLDQWNVLRNHVEEIEKAVKE
        D+  ++++C +S  RRV ++ ++GK +V IRE+Y KDGK++P  KGISL+ +QW+  + ++  IE AVK+
Subjt:  DETDEIVVCEISKNRRVMVRNWQGKIVVDIREFYVKDGKQMPGKKGISLSLDQWNVLRNHVEEIEKAVKE

AT5G09240.1 ssDNA-binding transcriptional regulator4.7e-2253.27Show/hide
Query:  MSAKGKRKDDEDHA------SERDAPPKKTLKADSDETDEIVVCEISKNRRVMVRNWQGKIVVDIREFYVKDGKQMP--GKKGISLSLDQWNVLRNHVEE
        MS  GKRKD++  A      SE  APPKK  K  +DE ++I +C + KNRRV VRN  G+I + IR+F+VKDG  +P   K+GISLSL+QWN LRNH E+
Subjt:  MSAKGKRKDDEDHA------SERDAPPKKTLKADSDETDEIVVCEISKNRRVMVRNWQGKIVVDIREFYVKDGKQMP--GKKGISLSLDQWNVLRNHVEE

Query:  IEKAVKE
        I+KA+ E
Subjt:  IEKAVKE

AT5G09240.2 ssDNA-binding transcriptional regulator1.6e-1742.22Show/hide
Query:  MSAKGKRKDDEDHA------SERDAPPKKTLKADSDETDEIVVCEISKNRRVMVRNWQGKIVVDIREFYVKDGKQMP--GKKGISLSLD-----------
        MS  GKRKD++  A      SE  APPKK  K  +DE ++I +C + KNRRV VRN  G+I + IR+F+VKDG  +P   K+GISLSL+           
Subjt:  MSAKGKRKDDEDHA------SERDAPPKKTLKADSDETDEIVVCEISKNRRVMVRNWQGKIVVDIREFYVKDGKQMP--GKKGISLSLD-----------

Query:  -----------------QWNVLRNHVEEIEKAVKE
                         QWN LRNH E+I+KA+ E
Subjt:  -----------------QWNVLRNHVEEIEKAVKE

AT5G09250.1 ssDNA-binding transcriptional regulator1.3e-3266.67Show/hide
Query:  MSAKGKRKDDE----DHASERDAPPKKTLKA--DSDETDEIVVCEISKNRRVMVRNWQGKIVVDIREFYVKDGKQMPGKKGISLSLDQWNVLRNHVEEIE
        MS++GKRKD++    D  SE  AP KK  K   DSD++D+IVVC ISKNRRV VRNW GKI +DIREFYVKDGK +PGKKGISLS+DQWN LRNH E+IE
Subjt:  MSAKGKRKDDE----DHASERDAPPKKTLKA--DSDETDEIVVCEISKNRRVMVRNWQGKIVVDIREFYVKDGKQMPGKKGISLSLDQWNVLRNHVEEIE

Query:  KAVKE
        KA+ +
Subjt:  KAVKE

AT5G09250.2 ssDNA-binding transcriptional regulator2.3e-2165.43Show/hide
Query:  MSAKGKRKDDE----DHASERDAPPKKTLKA--DSDETDEIVVCEISKNRRVMVRNWQGKIVVDIREFYVKDGKQMPGKKG
        MS++GKRKD++    D  SE  AP KK  K   DSD++D+IVVC ISKNRRV VRNW GKI +DIREFYVKDGK +PGKKG
Subjt:  MSAKGKRKDDE----DHASERDAPPKKTLKA--DSDETDEIVVCEISKNRRVMVRNWQGKIVVDIREFYVKDGKQMPGKKG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCGGCAAAAGGAAAGCGAAAGGACGACGAAGATCACGCATCGGAGCGAGATGCTCCACCGAAGAAGACGCTCAAGGCGGATTCCGACGAAACCGACGAAATCGTCGT
CTGTGAGATTTCGAAGAACCGTAGGGTTATGGTGAGGAACTGGCAAGGGAAGATTGTGGTGGATATTCGGGAGTTTTATGTCAAAGATGGAAAGCAAATGCCTGGAAAGA
AAGGCATCTCGTTATCCTTGGATCAGTGGAATGTTCTTCGGAATCATGTAGAAGAAATTGAGAAGGCCGTTAAAGAAAATGCGTGA
mRNA sequenceShow/hide mRNA sequence
ATGTCGGCAAAAGGAAAGCGAAAGGACGACGAAGATCACGCATCGGAGCGAGATGCTCCACCGAAGAAGACGCTCAAGGCGGATTCCGACGAAACCGACGAAATCGTCGT
CTGTGAGATTTCGAAGAACCGTAGGGTTATGGTGAGGAACTGGCAAGGGAAGATTGTGGTGGATATTCGGGAGTTTTATGTCAAAGATGGAAAGCAAATGCCTGGAAAGA
AAGGCATCTCGTTATCCTTGGATCAGTGGAATGTTCTTCGGAATCATGTAGAAGAAATTGAGAAGGCCGTTAAAGAAAATGCGTGA
Protein sequenceShow/hide protein sequence
MSAKGKRKDDEDHASERDAPPKKTLKADSDETDEIVVCEISKNRRVMVRNWQGKIVVDIREFYVKDGKQMPGKKGISLSLDQWNVLRNHVEEIEKAVKENA