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Sed0002685 (gene) of Chayote v1 genome

Gene IDSed0002685
OrganismSechium edule (Chayote v1)
DescriptionB3 domain-containing protein
Genome locationLG12:1594975..1597590
RNA-Seq ExpressionSed0002685
SyntenySed0002685
Gene Ontology termsGO:0005634 - nucleus (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0003677 - DNA binding (molecular function)
InterPro domainsIPR003340 - B3 DNA binding domain
IPR015300 - DNA-binding pseudobarrel domain superfamily
IPR044837 - B3 domain-containing protein REM16-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022147119.1 B3 domain-containing protein Os04g0386900-like [Momordica charantia]4.9e-5470.75Show/hide
Query:  MQSEEKPAMDLATMEPQDSEILPISGKSFHGVILSKSHVPPACIMVLPVKFQSVLPAIIIPAVLYCGGKKWNVDYYGNRRSKTFDIRQWRKFVNDNRLKL
        MQS+EKP  +  TMEP++ EI P+S K FHGVIL+KSHV P   M LP KF SVLPAI+I  VLYCGGK+W VDYYGNRR K+ D R WRKFVNDN LK 
Subjt:  MQSEEKPAMDLATMEPQDSEILPISGKSFHGVILSKSHVPPACIMVLPVKFQSVLPAIIIPAVLYCGGKKWNVDYYGNRRSKTFDIRQWRKFVNDNRLKL

Query:  GDACVFELMECCSTSLTFRVQILRGDIPFQLHDKFSGDTVDTPILVD
        GDACVFELMEC S++L FRVQILRGDIP QLHDKFSG++ DTPI +D
Subjt:  GDACVFELMECCSTSLTFRVQILRGDIPFQLHDKFSGDTVDTPILVD

XP_022941967.1 B3 domain-containing protein Os04g0386900-like [Cucurbita moschata]8.9e-5670.75Show/hide
Query:  MQSEEKPAMDLATMEPQDSEILPISGKSFHGVILSKSHVPPACIMVLPVKFQSVLPAIIIPAVLYCGGKKWNVDYYGNRRSKTFDIRQWRKFVNDNRLKL
        MQS+EKP  +   M+PQ+S ILP+SGK +HGVILSKSHV P C M LP KF SVLPAI+IPAVLYC GKKW +DYYGNRR K  D +QWRKFVNDN LK 
Subjt:  MQSEEKPAMDLATMEPQDSEILPISGKSFHGVILSKSHVPPACIMVLPVKFQSVLPAIIIPAVLYCGGKKWNVDYYGNRRSKTFDIRQWRKFVNDNRLKL

Query:  GDACVFELMECCSTSLTFRVQILRGDIPFQLHDKFSGDTVDTPILVD
        GDACVFEL+EC S+ + FRVQILRGDIPF+LH+KFSG++ +TPIL+D
Subjt:  GDACVFELMECCSTSLTFRVQILRGDIPFQLHDKFSGDTVDTPILVD

XP_022974195.1 B3 domain-containing protein Os04g0386900-like [Cucurbita maxima]4.0e-5671.43Show/hide
Query:  MQSEEKPAMDLATMEPQDSEILPISGKSFHGVILSKSHVPPACIMVLPVKFQSVLPAIIIPAVLYCGGKKWNVDYYGNRRSKTFDIRQWRKFVNDNRLKL
        MQS+EKP  +   M+PQ+S ILP+SGK +HGVILSKSHV P C M LP KF SVLPAI+IPAVLYC GKKW +DYYGNRR K  D +QWRKFVNDN LK 
Subjt:  MQSEEKPAMDLATMEPQDSEILPISGKSFHGVILSKSHVPPACIMVLPVKFQSVLPAIIIPAVLYCGGKKWNVDYYGNRRSKTFDIRQWRKFVNDNRLKL

Query:  GDACVFELMECCSTSLTFRVQILRGDIPFQLHDKFSGDTVDTPILVD
        GDACVFEL+EC S+ L FRVQILRGDIPF+LH+KFSG++ +TPIL+D
Subjt:  GDACVFELMECCSTSLTFRVQILRGDIPFQLHDKFSGDTVDTPILVD

XP_023539026.1 B3 domain-containing protein Os04g0386900-like [Cucurbita pepo subsp. pepo]1.2e-5570.07Show/hide
Query:  MQSEEKPAMDLATMEPQDSEILPISGKSFHGVILSKSHVPPACIMVLPVKFQSVLPAIIIPAVLYCGGKKWNVDYYGNRRSKTFDIRQWRKFVNDNRLKL
        MQS+EKP  +   M+PQ+S ILP+SGK +HGVILSKSHV P C M +P KF SVLPAI+IPAVLYC GKKW +DYYGNRR K  D +QWRKFVNDN LK 
Subjt:  MQSEEKPAMDLATMEPQDSEILPISGKSFHGVILSKSHVPPACIMVLPVKFQSVLPAIIIPAVLYCGGKKWNVDYYGNRRSKTFDIRQWRKFVNDNRLKL

Query:  GDACVFELMECCSTSLTFRVQILRGDIPFQLHDKFSGDTVDTPILVD
        GDACVFEL+EC S+ + FRVQILRGDIPF+LH+KFSG++ +TPIL+D
Subjt:  GDACVFELMECCSTSLTFRVQILRGDIPFQLHDKFSGDTVDTPILVD

XP_038903804.1 B3 domain-containing protein Os04g0386900-like [Benincasa hispida]2.5e-5873.47Show/hide
Query:  MQSEEKPAMDLATMEPQDSEILPISGKSFHGVILSKSHVPPACIMVLPVKFQSVLPAIIIPAVLYCGGKKWNVDYYGNRRSKTFDIRQWRKFVNDNRLKL
        MQS+ KP  +L TMEPQD EILP+SGK +H  ILSKSHV P C +VLP KF S+LPAI+IPAVL+C GKKW +DYYGNRR K  D +QWRKFVNDNRLK 
Subjt:  MQSEEKPAMDLATMEPQDSEILPISGKSFHGVILSKSHVPPACIMVLPVKFQSVLPAIIIPAVLYCGGKKWNVDYYGNRRSKTFDIRQWRKFVNDNRLKL

Query:  GDACVFELMECCSTSLTFRVQILRGDIPFQLHDKFSGDTVDTPILVD
        GDACVFELMEC S+ L FRVQILRGDIPFQLHDKFSG+T DTPI ++
Subjt:  GDACVFELMECCSTSLTFRVQILRGDIPFQLHDKFSGDTVDTPILVD

TrEMBL top hitse value%identityAlignment
A0A0A0L3V3 TF-B3 domain-containing protein6.0e-5065.99Show/hide
Query:  MQSEEKPAMDLATMEPQDSEILPISGKSFHGVILSKSHVPPACIMVLPVKFQSVLPAIIIPAVLYCGGKKWNVDYYGNRRSKTFDIRQWRKFVNDNRLKL
        MQS  KP  +L TMEPQ+ E +P+SGK +H  ILSKSHV P   +VLP KF S+LPAI+IPAVL C GKKW +DY+GNRR K  D +QWRKFVNDN LK 
Subjt:  MQSEEKPAMDLATMEPQDSEILPISGKSFHGVILSKSHVPPACIMVLPVKFQSVLPAIIIPAVLYCGGKKWNVDYYGNRRSKTFDIRQWRKFVNDNRLKL

Query:  GDACVFELMECCSTSLTFRVQILRGDIPFQLHDKFSGDTVDTPILVD
        GDA VFEL+EC S+ L FRVQIL GDIP +LHDKFSG+T +TPI +D
Subjt:  GDACVFELMECCSTSLTFRVQILRGDIPFQLHDKFSGDTVDTPILVD

A0A6J1CYN6 B3 domain-containing protein Os04g0386900-like4.9e-5268.03Show/hide
Query:  MQSEEKPAMDLATMEPQDSEILPISGKSFHGVILSKSHVPPACIMVLPVKFQSVLPAIIIPAVLYCGGKKWNVDYYGNRRSKTFDIRQWRKFVNDNRLKL
        MQS+EKP  + A MEP+  EI P+S K FHGVIL KSHV PA +M LP KF SVLPAI+I  V+YCGGK+W VDYYGNRR +T D R WRKFV++N LK 
Subjt:  MQSEEKPAMDLATMEPQDSEILPISGKSFHGVILSKSHVPPACIMVLPVKFQSVLPAIIIPAVLYCGGKKWNVDYYGNRRSKTFDIRQWRKFVNDNRLKL

Query:  GDACVFELMECCSTSLTFRVQILRGDIPFQLHDKFSGDTVDTPILVD
        GDACVFELMEC S+ + FRVQILRGDIP QLHDKF G++ DTPI +D
Subjt:  GDACVFELMECCSTSLTFRVQILRGDIPFQLHDKFSGDTVDTPILVD

A0A6J1D033 B3 domain-containing protein Os04g0386900-like2.4e-5470.75Show/hide
Query:  MQSEEKPAMDLATMEPQDSEILPISGKSFHGVILSKSHVPPACIMVLPVKFQSVLPAIIIPAVLYCGGKKWNVDYYGNRRSKTFDIRQWRKFVNDNRLKL
        MQS+EKP  +  TMEP++ EI P+S K FHGVIL+KSHV P   M LP KF SVLPAI+I  VLYCGGK+W VDYYGNRR K+ D R WRKFVNDN LK 
Subjt:  MQSEEKPAMDLATMEPQDSEILPISGKSFHGVILSKSHVPPACIMVLPVKFQSVLPAIIIPAVLYCGGKKWNVDYYGNRRSKTFDIRQWRKFVNDNRLKL

Query:  GDACVFELMECCSTSLTFRVQILRGDIPFQLHDKFSGDTVDTPILVD
        GDACVFELMEC S++L FRVQILRGDIP QLHDKFSG++ DTPI +D
Subjt:  GDACVFELMECCSTSLTFRVQILRGDIPFQLHDKFSGDTVDTPILVD

A0A6J1FTK2 B3 domain-containing protein Os04g0386900-like4.3e-5670.75Show/hide
Query:  MQSEEKPAMDLATMEPQDSEILPISGKSFHGVILSKSHVPPACIMVLPVKFQSVLPAIIIPAVLYCGGKKWNVDYYGNRRSKTFDIRQWRKFVNDNRLKL
        MQS+EKP  +   M+PQ+S ILP+SGK +HGVILSKSHV P C M LP KF SVLPAI+IPAVLYC GKKW +DYYGNRR K  D +QWRKFVNDN LK 
Subjt:  MQSEEKPAMDLATMEPQDSEILPISGKSFHGVILSKSHVPPACIMVLPVKFQSVLPAIIIPAVLYCGGKKWNVDYYGNRRSKTFDIRQWRKFVNDNRLKL

Query:  GDACVFELMECCSTSLTFRVQILRGDIPFQLHDKFSGDTVDTPILVD
        GDACVFEL+EC S+ + FRVQILRGDIPF+LH+KFSG++ +TPIL+D
Subjt:  GDACVFELMECCSTSLTFRVQILRGDIPFQLHDKFSGDTVDTPILVD

A0A6J1IDC2 B3 domain-containing protein Os04g0386900-like1.9e-5671.43Show/hide
Query:  MQSEEKPAMDLATMEPQDSEILPISGKSFHGVILSKSHVPPACIMVLPVKFQSVLPAIIIPAVLYCGGKKWNVDYYGNRRSKTFDIRQWRKFVNDNRLKL
        MQS+EKP  +   M+PQ+S ILP+SGK +HGVILSKSHV P C M LP KF SVLPAI+IPAVLYC GKKW +DYYGNRR K  D +QWRKFVNDN LK 
Subjt:  MQSEEKPAMDLATMEPQDSEILPISGKSFHGVILSKSHVPPACIMVLPVKFQSVLPAIIIPAVLYCGGKKWNVDYYGNRRSKTFDIRQWRKFVNDNRLKL

Query:  GDACVFELMECCSTSLTFRVQILRGDIPFQLHDKFSGDTVDTPILVD
        GDACVFEL+EC S+ L FRVQILRGDIPF+LH+KFSG++ +TPIL+D
Subjt:  GDACVFELMECCSTSLTFRVQILRGDIPFQLHDKFSGDTVDTPILVD

SwissProt top hitse value%identityAlignment
Q2QMT5 B3 domain-containing protein LOC_Os12g400901.3e-0431.33Show/hide
Query:  VILSKSHVPPACIMVLPVKFQS---VLPAIIIPAVLYCGGKKWNVDYYG-NRRSKTFDIRQWRKFVNDNRLKLGDACVFELME
        V+L  +HV    I+++P +F +      +  I  +     +KW+V YY  +  ++ F+  +W KF+ +NRL+ G+ C+FELM+
Subjt:  VILSKSHVPPACIMVLPVKFQS---VLPAIIIPAVLYCGGKKWNVDYYG-NRRSKTFDIRQWRKFVNDNRLKLGDACVFELME

Q6AV21 B3 domain-containing protein Os03g06198005.7e-0540Show/hide
Query:  VLYCGGKKWNVDYYGNRR----SKTFDIRQWRKFVNDNRLKLGDACVFELMECCSTSLTFRVQIL
        VL C G  W ++    RR     + F    WRKF +DNRL++GD C+FEL +     LT  V I+
Subjt:  VLYCGGKKWNVDYYGNRR----SKTFDIRQWRKFVNDNRLKLGDACVFELMECCSTSLTFRVQIL

Q7XLP4 B3 domain-containing protein Os04g03869004.5e-1838.46Show/hide
Query:  ILPISGKSFHGVILSKSHVPPACIMVLPVKFQSVLPAIIIPAVLYCGGKKWNVDYYGNRRSKTFDIRQWRKFVNDNRLKLGDACVFELMECC---STSLT
        +LP+ GK +   I+ KSHV P   +V+P  F  +LP+   PA L   G+ W + + G R  +  +   WR F  DN L+LGD CVFEL+         + 
Subjt:  ILPISGKSFHGVILSKSHVPPACIMVLPVKFQSVLPAIIIPAVLYCGGKKWNVDYYGNRRSKTFDIRQWRKFVNDNRLKLGDACVFELMECC---STSLT

Query:  FRVQILRGDIPFQLHDKFSGDTVDTPILVD
        FRVQ+LR +IP ++  +  G T  TPI++D
Subjt:  FRVQILRGDIPFQLHDKFSGDTVDTPILVD

Q8RYD1 B3 domain-containing protein REM167.4e-0533.33Show/hide
Query:  VILSKSHVPPACIMVLPVKFQSVLPAIII--PAVLYCGGKKWNVDY--YGNRRSKTFDIRQWRKFVNDNRLKLGDACVFELMECCSTSLTFRVQILRGD
        V + +SHV   C + +P K+  V   +I     V+     KW + +  +G R S       W+KFV DN L+ GD CVFE     +  L   V I RG+
Subjt:  VILSKSHVPPACIMVLPVKFQSVLPAIII--PAVLYCGGKKWNVDY--YGNRRSKTFDIRQWRKFVNDNRLKLGDACVFELMECCSTSLTFRVQILRGD

Q9LHY9 B3 domain-containing protein Os06g01123002.5e-1641.6Show/hide
Query:  SGKSFHGVILSKSHVPPACIMVLPVKFQSVL--PAIIIPAVLYCGGKKWNVDYYGNRRSKTFDIRQWRKFVNDNRLKLGDACVFELMEC-CSTSLTFRVQ
        +G  F   +++KSH+ P   M +P +FQ  L  P     AVL+ GGK W   Y G+ + K  D   W +F  DNRL +GDACVFEL+    +  L F+VQ
Subjt:  SGKSFHGVILSKSHVPPACIMVLPVKFQSVL--PAIIIPAVLYCGGKKWNVDYYGNRRSKTFDIRQWRKFVNDNRLKLGDACVFELMEC-CSTSLTFRVQ

Query:  ILRGDIPFQLHDKFSGDTVDTPILV
        ILRG +P ++     G T D PIL+
Subjt:  ILRGDIPFQLHDKFSGDTVDTPILV

Arabidopsis top hitse value%identityAlignment
AT4G33280.1 AP2/B3-like transcriptional factor family protein5.3e-0633.33Show/hide
Query:  VILSKSHVPPACIMVLPVKFQSVLPAIII--PAVLYCGGKKWNVDY--YGNRRSKTFDIRQWRKFVNDNRLKLGDACVFELMECCSTSLTFRVQILRGD
        V + +SHV   C + +P K+  V   +I     V+     KW + +  +G R S       W+KFV DN L+ GD CVFE     +  L   V I RG+
Subjt:  VILSKSHVPPACIMVLPVKFQSVLPAIII--PAVLYCGGKKWNVDY--YGNRRSKTFDIRQWRKFVNDNRLKLGDACVFELMECCSTSLTFRVQILRGD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAGTCAGAGGAGAAACCGGCGATGGATCTTGCAACAATGGAGCCGCAAGATAGTGAAATTTTGCCCATATCTGGCAAATCCTTCCATGGTGTTATTCTTTCAAAATC
GCATGTCCCTCCCGCATGTATTATGGTTTTGCCAGTCAAATTTCAATCTGTTTTACCTGCTATCATTATCCCTGCCGTTCTTTACTGCGGCGGAAAGAAATGGAACGTTG
ATTATTACGGGAATCGACGCAGTAAAACATTCGACATAAGACAGTGGAGGAAGTTTGTTAATGATAATCGTCTCAAGCTCGGAGATGCTTGTGTATTTGAGCTAATGGAA
TGCTGTAGCACCTCACTCACATTCAGAGTTCAAATTCTCCGAGGCGATATCCCTTTCCAGCTGCACGACAAGTTCAGTGGGGATACTGTAGACACACCTATACTCGTTGA
CTAG
mRNA sequenceShow/hide mRNA sequence
ATTTCTTAAAAAAGGTGTGAAATCTAACTTTGAGGATTGAGCTATGAATTTTGTTAGGCGAATTGAATTTCTTGGAATTATCAGCCCATTTCTTTCGTCCCCGAAGAACA
AATGAACAGAAGAACGAACGACTGAGGGTTTCACTCTCAGCCTGCTCAGATCCATCACAGGTTACATCTGATTAATCTTCCTTCTTTAATTTTCTCTTCCACATTTTCGG
TTCCAATCAACGAATAATCCAGAAAAAAAGTGATTTTCTTTGTGATTTGTGCTGAAAAAAGTCTCCAAATGCAGTCAGAGGAGAAACCGGCGATGGATCTTGCAACAATG
GAGCCGCAAGATAGTGAAATTTTGCCCATATCTGGCAAATCCTTCCATGGTGTTATTCTTTCAAAATCGCATGTCCCTCCCGCATGTATTATGGTTTTGCCAGTCAAATT
TCAATCTGTTTTACCTGCTATCATTATCCCTGCCGTTCTTTACTGCGGCGGAAAGAAATGGAACGTTGATTATTACGGGAATCGACGCAGTAAAACATTCGACATAAGAC
AGTGGAGGAAGTTTGTTAATGATAATCGTCTCAAGCTCGGAGATGCTTGTGTATTTGAGCTAATGGAATGCTGTAGCACCTCACTCACATTCAGAGTTCAAATTCTCCGA
GGCGATATCCCTTTCCAGCTGCACGACAAGTTCAGTGGGGATACTGTAGACACACCTATACTCGTTGACTAGCTGGTGGTCATAGTGTTCAACAGTTTCGAATCCCGACT
TCAATCGGACAGCCCGTTTGATCTCTGTAAGCGGATATGTATTTTTGTTCTCCTATCAATACTACCTCTGTCTTAGTTAGGTGGAAGGTCAGGGGAAGAAGCAGGAATCA
TTTTGGCTGAACTGTGGTTCATAAAGGAGAGGCCAGTCCTCTTGAATTGGCCGAAGTTTGAATCATATAAGTTATCATCCCTGGTATCTGTTTCTTTTATTTTGTGTTCA
TCTTTGTAAGGGTAAAACCGTAAAAGGTAACCCTGTTTATATTATCTCACATATGTATAAACGAGGAGGCTTTCGAAATTTCATGGCCTTTTCATTTTGTACTCTATTAT
CTCTCTTTTTATAGGAAACCATCAATGCTTGTTAAAGAACATCTACTTGTAACAACTTTTTTTTTTATATCCGTGAATGTAAGGGTTAGTTTATGG
Protein sequenceShow/hide protein sequence
MQSEEKPAMDLATMEPQDSEILPISGKSFHGVILSKSHVPPACIMVLPVKFQSVLPAIIIPAVLYCGGKKWNVDYYGNRRSKTFDIRQWRKFVNDNRLKLGDACVFELME
CCSTSLTFRVQILRGDIPFQLHDKFSGDTVDTPILVD