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Sed0002731 (gene) of Chayote v1 genome

Gene IDSed0002731
OrganismSechium edule (Chayote v1)
DescriptionNAD(P)H-quinone oxidoreductase subunit J, chloroplastic
Genome locationLG04:37860706..37861671
RNA-Seq ExpressionSed0002731
SyntenySed0002731
Gene Ontology termsGO:0009987 - cellular process (biological process)
GO:0005622 - intracellular (cellular component)
GO:0016020 - membrane (cellular component)
GO:0005488 - binding (molecular function)
GO:0008137 - NADH dehydrogenase (ubiquinone) activity (molecular function)
InterPro domainsIPR001268 - NADH:ubiquinone oxidoreductase, 30kDa subunit
IPR020396 - NADH:ubiquinone oxidoreductase, 30kDa subunit, conserved site
IPR037232 - NADH:ubiquinone oxidoreductase, 30kDa subunit superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF2530678.1 hypothetical protein F2Q70_00030241 [Brassica cretica]9.3e-4347.66Show/hide
Query:  MKMAPSLVILYEQM-------RTKICYCYGSLYNYREGFNSRRCV---------FAGCPPKPEVVIDAITKLRKKISREIYEDRIKSQE-----------
        MKMAPSLV LYEQM           C   G +++  + +++ R V           GCPPKPE VIDAITKLRKKI+REIY+DRI+ Q            
Subjt:  MKMAPSLVILYEQM-------RTKICYCYGSLYNYREGFNSRRCV---------FAGCPPKPEVVIDAITKLRKKISREIYEDRIKSQE-----------

Query:  ----------ENRSLGFDYQGIETLQIKLEEWHSIAVILYVYGYTYLRSQCAYDVV--------------------APRICY------------------
                   +RSLGFDYQGIETLQIK E+WHSIAVILY+YGY YLRSQCAYDV                     A  +C                   
Subjt:  ----------ENRSLGFDYQGIETLQIKLEEWHSIAVILYVYGYTYLRSQCAYDVV--------------------APRICY------------------

Query:  --ADFPERESYDMLGISYDNHPRLKRILMPESWVG
           DF ERESYDMLGI+YD+HPRLK+ILMPESW+G
Subjt:  --ADFPERESYDMLGISYDNHPRLKRILMPESWVG

KAF3485482.1 hypothetical protein F2Q69_00053518 [Brassica cretica]1.6e-4248.51Show/hide
Query:  MKMAPSLVILYEQM-------RTKICYCYGSLYNYREGFNSRRCV---------FAGCPPKPEVVIDAITKLRKKISREIYEDRIKSQE-----------
        MKMAPSLV LYEQM           C   G +++  + +++ R V           GCPPKPE VIDAITKLRKKI+REIY+DRI+ Q            
Subjt:  MKMAPSLVILYEQM-------RTKICYCYGSLYNYREGFNSRRCV---------FAGCPPKPEVVIDAITKLRKKISREIYEDRIKSQE-----------

Query:  ----------ENRSLGFDYQGIETLQIKLEEWHSIAVILYVYGYTYLRSQCAYDVV--------------------APRICY------------------
                   +RSLGFDYQGIETLQIK E+WHSIAVILYVYGY YLRSQCAYDV                     A  IC                   
Subjt:  ----------ENRSLGFDYQGIETLQIKLEEWHSIAVILYVYGYTYLRSQCAYDVV--------------------APRICY------------------

Query:  --ADFPERESYDMLGISYDNHPRLKRILMPESWVG
           DF ERESYDMLGI+YD+HP LKRILMPESW+G
Subjt:  --ADFPERESYDMLGISYDNHPRLKRILMPESWVG

QCE13737.1 NADH dehydrogenase I subunit K [Vigna unguiculata]3.2e-4346.21Show/hide
Query:  MKMAPSLVILYEQM-------RTKICYCYGSLYNYREGFNSRRCV---------FAGCPPKPEVVIDAITKLRKKISREIYEDRIKSQEEN---------
        MKMAPSLV LYEQM           C   G +++  + +++ R V           GCPPKPE VIDAITKLRKKISREIYEDRI+SQ+EN         
Subjt:  MKMAPSLVILYEQM-------RTKICYCYGSLYNYREGFNSRRCV---------FAGCPPKPEVVIDAITKLRKKISREIYEDRIKSQEEN---------

Query:  -----------------------------------------RSLGFDYQGIETLQIKLEEWHSIAVILYVYGYTYLRSQCAYDVVA--------------
                                                 RSLGFDYQGIETLQIK E+WHSIAVILYVYGY YLRSQCAYDV                
Subjt:  -----------------------------------------RSLGFDYQGIETLQIKLEEWHSIAVILYVYGYTYLRSQCAYDVVA--------------

Query:  -------------------PRI-------CYADFPERESYDMLGISYDNHPRLKRILMPESWVG
                           PRI         ADF ERESYDMLGI YDNHPRLKRILMPESW+G
Subjt:  -------------------PRI-------CYADFPERESYDMLGISYDNHPRLKRILMPESWVG

RYR42400.1 hypothetical protein Ahy_A08g038873 [Arachis hypogaea]8.4e-4453.27Show/hide
Query:  MKMAPSLVILYEQM-------RTKICYCYGSLYNYREGFNSRRCV---------FAGCPPKPEVVIDAITKLRKKISREIYEDRIKSQEENRSLGFDYQG
        MKMAPSLV LYEQM           C   G +++  + +++ R V           GCPPKPE +IDAITKLRKKISREI ED I      RSLGFDYQG
Subjt:  MKMAPSLVILYEQM-------RTKICYCYGSLYNYREGFNSRRCV---------FAGCPPKPEVVIDAITKLRKKISREIYEDRIKSQEENRSLGFDYQG

Query:  IETLQIKLEEWHSIAVILYVYGYTYLRSQCAYDVVA---------------------------------PRI-------CYADFPERESYDMLGISYDNH
        IETLQIK E+WHSIAVILYVYGY YLRSQCAYDV                                   PRI         ADF ERESYDMLGISY+NH
Subjt:  IETLQIKLEEWHSIAVILYVYGYTYLRSQCAYDVVA---------------------------------PRI-------CYADFPERESYDMLGISYDNH

Query:  PRLKRILMPESWVG
        PRLKRILMPE+W+G
Subjt:  PRLKRILMPESWVG

VDD65813.1 unnamed protein product [Brassica oleracea]3.5e-4248.07Show/hide
Query:  MAPSLVILYEQM-------RTKICYCYGSLYNYREGFNSRRCV---------FAGCPPKPEVVIDAITKLRKKISREIYEDRIKSQE-------------
        MAPSLV LYEQM           C   G +++  + +++ R V           GCPPKPE VIDAITKLRKKI+REIY+DRI+ Q              
Subjt:  MAPSLVILYEQM-------RTKICYCYGSLYNYREGFNSRRCV---------FAGCPPKPEVVIDAITKLRKKISREIYEDRIKSQE-------------

Query:  --------ENRSLGFDYQGIETLQIKLEEWHSIAVILYVYGYTYLRSQCAYDVV--------------------APRICY--------------------
                 +RSLGFDYQGIETLQIK E+WHSIAVILYVYGY YLRSQCAYDV                     A  +C                     
Subjt:  --------ENRSLGFDYQGIETLQIKLEEWHSIAVILYVYGYTYLRSQCAYDVV--------------------APRICY--------------------

Query:  ADFPERESYDMLGISYDNHPRLKRILMPESWVG
         DF ERESYDMLGI+YD+HPRLKRILMPESW+G
Subjt:  ADFPERESYDMLGISYDNHPRLKRILMPESWVG

TrEMBL top hitse value%identityAlignment
A0A0D3CFT9 Uncharacterized protein1.7e-4248.07Show/hide
Query:  MAPSLVILYEQM-------RTKICYCYGSLYNYREGFNSRRCV---------FAGCPPKPEVVIDAITKLRKKISREIYEDRIKSQE-------------
        MAPSLV LYEQM           C   G +++  + +++ R V           GCPPKPE VIDAITKLRKKI+REIY+DRI+ Q              
Subjt:  MAPSLVILYEQM-------RTKICYCYGSLYNYREGFNSRRCV---------FAGCPPKPEVVIDAITKLRKKISREIYEDRIKSQE-------------

Query:  --------ENRSLGFDYQGIETLQIKLEEWHSIAVILYVYGYTYLRSQCAYDVV--------------------APRICY--------------------
                 +RSLGFDYQGIETLQIK E+WHSIAVILYVYGY YLRSQCAYDV                     A  +C                     
Subjt:  --------ENRSLGFDYQGIETLQIKLEEWHSIAVILYVYGYTYLRSQCAYDVV--------------------APRICY--------------------

Query:  ADFPERESYDMLGISYDNHPRLKRILMPESWVG
         DF ERESYDMLGI+YD+HPRLKRILMPESW+G
Subjt:  ADFPERESYDMLGISYDNHPRLKRILMPESWVG

A0A3P6G4H7 Uncharacterized protein1.7e-4248.07Show/hide
Query:  MAPSLVILYEQM-------RTKICYCYGSLYNYREGFNSRRCV---------FAGCPPKPEVVIDAITKLRKKISREIYEDRIKSQE-------------
        MAPSLV LYEQM           C   G +++  + +++ R V           GCPPKPE VIDAITKLRKKI+REIY+DRI+ Q              
Subjt:  MAPSLVILYEQM-------RTKICYCYGSLYNYREGFNSRRCV---------FAGCPPKPEVVIDAITKLRKKISREIYEDRIKSQE-------------

Query:  --------ENRSLGFDYQGIETLQIKLEEWHSIAVILYVYGYTYLRSQCAYDVV--------------------APRICY--------------------
                 +RSLGFDYQGIETLQIK E+WHSIAVILYVYGY YLRSQCAYDV                     A  +C                     
Subjt:  --------ENRSLGFDYQGIETLQIKLEEWHSIAVILYVYGYTYLRSQCAYDVV--------------------APRICY--------------------

Query:  ADFPERESYDMLGISYDNHPRLKRILMPESWVG
         DF ERESYDMLGI+YD+HPRLKRILMPESW+G
Subjt:  ADFPERESYDMLGISYDNHPRLKRILMPESWVG

A0A445BUL8 Uncharacterized protein4.1e-4453.27Show/hide
Query:  MKMAPSLVILYEQM-------RTKICYCYGSLYNYREGFNSRRCV---------FAGCPPKPEVVIDAITKLRKKISREIYEDRIKSQEENRSLGFDYQG
        MKMAPSLV LYEQM           C   G +++  + +++ R V           GCPPKPE +IDAITKLRKKISREI ED I      RSLGFDYQG
Subjt:  MKMAPSLVILYEQM-------RTKICYCYGSLYNYREGFNSRRCV---------FAGCPPKPEVVIDAITKLRKKISREIYEDRIKSQEENRSLGFDYQG

Query:  IETLQIKLEEWHSIAVILYVYGYTYLRSQCAYDVVA---------------------------------PRI-------CYADFPERESYDMLGISYDNH
        IETLQIK E+WHSIAVILYVYGY YLRSQCAYDV                                   PRI         ADF ERESYDMLGISY+NH
Subjt:  IETLQIKLEEWHSIAVILYVYGYTYLRSQCAYDVVA---------------------------------PRI-------CYADFPERESYDMLGISYDNH

Query:  PRLKRILMPESWVG
        PRLKRILMPE+W+G
Subjt:  PRLKRILMPESWVG

A0A4D6M607 NADH dehydrogenase I subunit J1.1e-4159.51Show/hide
Query:  GCPPKPEVVIDAITKLRKKISREIYEDRIKSQEE-----NRSLGFDYQGIETLQIKLEEWHSIAVILYVYGYTYLRSQCAYDVVA---------------
        GCPPKPE VIDAITKLRKKI+REIY+DRI+ Q+      +RSLGFDYQG+ETLQIK E+WHSIAVILYVYGY YLRSQCAYDV                 
Subjt:  GCPPKPEVVIDAITKLRKKISREIYEDRIKSQEE-----NRSLGFDYQGIETLQIKLEEWHSIAVILYVYGYTYLRSQCAYDVVA---------------

Query:  ------------------PRI-------CYADFPERESYDMLGISYDNHPRLKRILMPESWVG
                          PRI          DF ERESYDMLGI+YD+HPRLKRILMPESW+G
Subjt:  ------------------PRI-------CYADFPERESYDMLGISYDNHPRLKRILMPESWVG

A0A4D6NPI7 NADH dehydrogenase I subunit K1.5e-4346.21Show/hide
Query:  MKMAPSLVILYEQM-------RTKICYCYGSLYNYREGFNSRRCV---------FAGCPPKPEVVIDAITKLRKKISREIYEDRIKSQEEN---------
        MKMAPSLV LYEQM           C   G +++  + +++ R V           GCPPKPE VIDAITKLRKKISREIYEDRI+SQ+EN         
Subjt:  MKMAPSLVILYEQM-------RTKICYCYGSLYNYREGFNSRRCV---------FAGCPPKPEVVIDAITKLRKKISREIYEDRIKSQEEN---------

Query:  -----------------------------------------RSLGFDYQGIETLQIKLEEWHSIAVILYVYGYTYLRSQCAYDVVA--------------
                                                 RSLGFDYQGIETLQIK E+WHSIAVILYVYGY YLRSQCAYDV                
Subjt:  -----------------------------------------RSLGFDYQGIETLQIKLEEWHSIAVILYVYGYTYLRSQCAYDVVA--------------

Query:  -------------------PRI-------CYADFPERESYDMLGISYDNHPRLKRILMPESWVG
                           PRI         ADF ERESYDMLGI YDNHPRLKRILMPESW+G
Subjt:  -------------------PRI-------CYADFPERESYDMLGISYDNHPRLKRILMPESWVG

SwissProt top hitse value%identityAlignment
B0Z4L4 NAD(P)H-quinone oxidoreductase subunit J, chloroplastic3.8e-3158.87Show/hide
Query:  NRSLGFDYQGIETLQIKLEEWHSIAVILYVYGYTYLRSQCAYDVV--------------------APRICY--------------------ADFPERESY
        +RSLGFDYQGIETLQIK EEWHSIAVILYVYGY YLRSQCAYDV                     A  +C                     ADF ERESY
Subjt:  NRSLGFDYQGIETLQIKLEEWHSIAVILYVYGYTYLRSQCAYDVV--------------------APRICY--------------------ADFPERESY

Query:  DMLGISYDNHPRLKRILMPESWVG
        DMLGI YDNHPRLKRILMPESW+G
Subjt:  DMLGISYDNHPRLKRILMPESWVG

B0Z4U8 NAD(P)H-quinone oxidoreductase subunit J, chloroplastic3.8e-3158.87Show/hide
Query:  NRSLGFDYQGIETLQIKLEEWHSIAVILYVYGYTYLRSQCAYDVV--------------------APRICY--------------------ADFPERESY
        +RSLGFDYQGIETLQIK EEWHSIAVILYVYGY YLRSQCAYDV                     A  +C                     ADF ERESY
Subjt:  NRSLGFDYQGIETLQIKLEEWHSIAVILYVYGYTYLRSQCAYDVV--------------------APRICY--------------------ADFPERESY

Query:  DMLGISYDNHPRLKRILMPESWVG
        DMLGI YDNHPRLKRILMPESW+G
Subjt:  DMLGISYDNHPRLKRILMPESWVG

B0Z532 NAD(P)H-quinone oxidoreductase subunit J, chloroplastic3.8e-3158.87Show/hide
Query:  NRSLGFDYQGIETLQIKLEEWHSIAVILYVYGYTYLRSQCAYDVV--------------------APRICY--------------------ADFPERESY
        +RSLGFDYQGIETLQIK EEWHSIAVILYVYGY YLRSQCAYDV                     A  +C                     ADF ERESY
Subjt:  NRSLGFDYQGIETLQIKLEEWHSIAVILYVYGYTYLRSQCAYDVV--------------------APRICY--------------------ADFPERESY

Query:  DMLGISYDNHPRLKRILMPESWVG
        DMLGI YDNHPRLKRILMPESW+G
Subjt:  DMLGISYDNHPRLKRILMPESWVG

Q4VZH2 NAD(P)H-quinone oxidoreductase subunit J, chloroplastic7.7e-3261.29Show/hide
Query:  NRSLGFDYQGIETLQIKLEEWHSIAVILYVYGYTYLRSQCAYDV---------------------------------VAPRI-------CYADFPERESY
        +RSLGFDYQGIETLQIK EEWHSIAVILYVYGY YLRSQCAYDV                                 + PRI         ADFPERESY
Subjt:  NRSLGFDYQGIETLQIKLEEWHSIAVILYVYGYTYLRSQCAYDV---------------------------------VAPRI-------CYADFPERESY

Query:  DMLGISYDNHPRLKRILMPESWVG
        DMLGI YDNHPRLKRILMPESWVG
Subjt:  DMLGISYDNHPRLKRILMPESWVG

Q9MTP3 NAD(P)H-quinone oxidoreductase subunit J, chloroplastic3.8e-3158.87Show/hide
Query:  NRSLGFDYQGIETLQIKLEEWHSIAVILYVYGYTYLRSQCAYDVV--------------------APRICY--------------------ADFPERESY
        +RSLGFDYQGIETLQIK EEWHSIAVILYVYGY YLRSQCAYDV                     A  +C                     ADF ERESY
Subjt:  NRSLGFDYQGIETLQIKLEEWHSIAVILYVYGYTYLRSQCAYDVV--------------------APRICY--------------------ADFPERESY

Query:  DMLGISYDNHPRLKRILMPESWVG
        DMLGI YDNHPRLKRILMPESW+G
Subjt:  DMLGISYDNHPRLKRILMPESWVG

Arabidopsis top hitse value%identityAlignment
ATCG00420.1 NADH dehydrogenase subunit J3.9e-3156.45Show/hide
Query:  NRSLGFDYQGIETLQIKLEEWHSIAVILYVYGYTYLRSQCAYDVV--------------------APRICY--------------------ADFPERESY
        +RSLGFDYQGIETLQIK E+WHSIAVILYVYGY YLRSQCAYDV                     A  +C                      DF ERESY
Subjt:  NRSLGFDYQGIETLQIKLEEWHSIAVILYVYGYTYLRSQCAYDVV--------------------APRICY--------------------ADFPERESY

Query:  DMLGISYDNHPRLKRILMPESWVG
        DMLGI+YD+HPRLKRILMPESW+G
Subjt:  DMLGISYDNHPRLKRILMPESWVG

ATCG00430.1 photosystem II reaction center protein G4.3e-1450Show/hide
Query:  MKMAPSLVILYEQM-------RTKICYCYGSLYNYREGFNSRRCV---------FAGCPPKPEVVIDAITKLRKKISREIYEDRIKSQEENR
        MKMAPSLV LYEQM           C   G +++  + +++ R V           GCPPKPE VIDAITKLRKKI+REIY+DRI+ Q+ NR
Subjt:  MKMAPSLVILYEQM-------RTKICYCYGSLYNYREGFNSRRCV---------FAGCPPKPEVVIDAITKLRKKISREIYEDRIKSQEENR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAAATGGCTCCTTCTTTAGTAATATTATATGAGCAAATGCGAACCAAAATATGTTATTGCTATGGGAGCCTGTACAATTACAGAGAGGGATTTAATTCTCGTCGATG
TGTATTTGCCGGGTGTCCACCTAAACCCGAGGTCGTTATAGATGCTATAACAAAACTTCGTAAGAAAATCTCTCGAGAAATCTATGAAGATCGAATTAAGTCTCAAGAGG
AGAATCGATCTTTGGGTTTCGATTACCAAGGAATAGAGACTTTACAAATAAAGCTCGAGGAGTGGCATTCCATTGCAGTCATTTTATATGTATACGGTTACACTTATCTA
CGTTCCCAATGTGCTTATGATGTAGTAGCCCCCCGGATCTGTTATGCAGATTTTCCAGAAAGGGAATCTTATGATATGTTGGGAATTTCTTATGATAATCATCCACGTCT
AAAGCGTATCTTAATGCCTGAAAGTTGGGTAGGATGA
mRNA sequenceShow/hide mRNA sequence
ATGAAAATGGCTCCTTCTTTAGTAATATTATATGAGCAAATGCGAACCAAAATATGTTATTGCTATGGGAGCCTGTACAATTACAGAGAGGGATTTAATTCTCGTCGATG
TGTATTTGCCGGGTGTCCACCTAAACCCGAGGTCGTTATAGATGCTATAACAAAACTTCGTAAGAAAATCTCTCGAGAAATCTATGAAGATCGAATTAAGTCTCAAGAGG
AGAATCGATCTTTGGGTTTCGATTACCAAGGAATAGAGACTTTACAAATAAAGCTCGAGGAGTGGCATTCCATTGCAGTCATTTTATATGTATACGGTTACACTTATCTA
CGTTCCCAATGTGCTTATGATGTAGTAGCCCCCCGGATCTGTTATGCAGATTTTCCAGAAAGGGAATCTTATGATATGTTGGGAATTTCTTATGATAATCATCCACGTCT
AAAGCGTATCTTAATGCCTGAAAGTTGGGTAGGATGA
Protein sequenceShow/hide protein sequence
MKMAPSLVILYEQMRTKICYCYGSLYNYREGFNSRRCVFAGCPPKPEVVIDAITKLRKKISREIYEDRIKSQEENRSLGFDYQGIETLQIKLEEWHSIAVILYVYGYTYL
RSQCAYDVVAPRICYADFPERESYDMLGISYDNHPRLKRILMPESWVG