; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Sed0002749 (gene) of Chayote v1 genome

Gene IDSed0002749
OrganismSechium edule (Chayote v1)
Descriptionreplication protein A 70 kDa DNA-binding subunit A-like
Genome locationLG12:9283629..9284179
RNA-Seq ExpressionSed0002749
SyntenySed0002749
Gene Ontology termsNA
InterPro domainsIPR012340 - Nucleic acid-binding, OB-fold
IPR013955 - Replication factor A, C-terminal


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG5512925.1 hypothetical protein RHGRI_038656 [Rhododendron griersonianum]2.2e-1430.77Show/hide
Query:  KKEFCSFIGRIVRIQNKSSLWFKKCTSCNRRVYPIGNAITSSCSICNNESISFVRRFMLKVIVSDGDSEAYITMFDATEHLTGCNVVEYFNNLSQVQNKE
        KK +C F G I+ I+N   +W++ C  C+++V+ I     + C  C++ +I    R+M+K+ V DG  +  +T+FDA + L GC + E+   L+  +  E
Subjt:  KKEFCSFIGRIVRIQNKSSLWFKKCTSCNRRVYPIGNAITSSCSICNNESISFVRRFMLKVIVSDGDSEAYITMFDATEHLTGCNVVEYFNNLSQVQNKE

Query:  SSEYYQNLVLAEDKKYYFLVRLNKDGERDR
        ++++Y++L+    ++Y F  R N   ++DR
Subjt:  SSEYYQNLVLAEDKKYYFLVRLNKDGERDR

OIT08014.1 hypothetical protein A4A49_30234 [Nicotiana attenuata]8.4e-1433.86Show/hide
Query:  LGKVKKEFCSFIGRIVRIQNKSSLWFKKCTSCNRRVYPIGNAITSSCSICNNESISFVRRFMLKVIVSDGDSEAYITMFDATEHLTGCNVVEYFNNLSQV
        +  + + +  F  +I  I NK   W+  C  C ++V  I +  T++C  CN E++ +  R+ L++ VS G+    + +FDA E+L GC+V EY  ++   
Subjt:  LGKVKKEFCSFIGRIVRIQNKSSLWFKKCTSCNRRVYPIGNAITSSCSICNNESISFVRRFMLKVIVSDGDSEAYITMFDATEHLTGCNVVEYFNNLSQV

Query:  QNKESSEYYQNLVLAEDKKYYFLVRLN
          KE S YY+ LVL++DK++ FLV+++
Subjt:  QNKESSEYYQNLVLAEDKKYYFLVRLN

XP_016476407.1 PREDICTED: replication protein A 70 kDa DNA-binding subunit B-like [Nicotiana tabacum]5.8e-1536.22Show/hide
Query:  FCSFIGRIVRIQNKSSLWFKKCTSCNRRVYPIGNAITSSCSICNNESISFVRRFMLKVIVSDGDSEAYITMFDATEHLTGCNVVEYFNNLSQVQNKESSE
        +  F  RI  I NK   W+  C  C ++V  I N   + C  C  E++ +  R++LK+ V D     Y+T+F++T +L GC+V  Y  ++S  QNKE S+
Subjt:  FCSFIGRIVRIQNKSSLWFKKCTSCNRRVYPIGNAITSSCSICNNESISFVRRFMLKVIVSDGDSEAYITMFDATEHLTGCNVVEYFNNLSQVQNKESSE

Query:  YYQNLVLAEDKKYYFLVRLNKDGERDR
        +Y+ LVL+ +KK+ FLV+++     DR
Subjt:  YYQNLVLAEDKKYYFLVRLNKDGERDR

XP_016500091.1 PREDICTED: replication protein A 70 kDa DNA-binding subunit A-like [Nicotiana tabacum]4.9e-1433.86Show/hide
Query:  FCSFIGRIVRIQNKSSLWFKKCTSCNRRVYPIGNAITSSCSICNNESISFVRRFMLKVIVSDGDSEAYITMFDATEHLTGCNVVEYFNNLSQVQNKESSE
        +  F  RI  I NK   W+  C  C ++V  I N   + C  C  E++ +  +++LK+ V D     Y+T+F++T +L GC+V  Y  ++S  Q KE S+
Subjt:  FCSFIGRIVRIQNKSSLWFKKCTSCNRRVYPIGNAITSSCSICNNESISFVRRFMLKVIVSDGDSEAYITMFDATEHLTGCNVVEYFNNLSQVQNKESSE

Query:  YYQNLVLAEDKKYYFLVRLNKDGERDR
        +Y+ LVL+ +K++ FLV+++     DR
Subjt:  YYQNLVLAEDKKYYFLVRLNKDGERDR

XP_020242959.1 replication protein A 70 kDa DNA-binding subunit B-like [Asparagus officinalis]2.0e-1536.92Show/hide
Query:  KKEFCSFIGRIVRIQNKSSLWFKKCTSCNRRVYPIGNAITSSCSICNNESISFVRRFMLKVIVSDGDSEAYITMFDATEHLTGCNVVEYFNNLSQVQNKE
        K  FCSF+ +I+ I N    +F  CT C + V+ I N  T++C+ C N +  +  R+ L++ V+DG   AY+T+FD  E L GC  + Y     ++   E
Subjt:  KKEFCSFIGRIVRIQNKSSLWFKKCTSCNRRVYPIGNAITSSCSICNNESISFVRRFMLKVIVSDGDSEAYITMFDATEHLTGCNVVEYFNNLSQVQNKE

Query:  SSEYYQNLVLAEDKKYYFLVRLNKDGERDR
        SSE YQ +    +K+Y FLV++N+  E +R
Subjt:  SSEYYQNLVLAEDKKYYFLVRLNKDGERDR

TrEMBL top hitse value%identityAlignment
A0A1J6IT36 Rep_fac-A_C domain-containing protein4.0e-1433.86Show/hide
Query:  LGKVKKEFCSFIGRIVRIQNKSSLWFKKCTSCNRRVYPIGNAITSSCSICNNESISFVRRFMLKVIVSDGDSEAYITMFDATEHLTGCNVVEYFNNLSQV
        +  + + +  F  +I  I NK   W+  C  C ++V  I +  T++C  CN E++ +  R+ L++ VS G+    + +FDA E+L GC+V EY  ++   
Subjt:  LGKVKKEFCSFIGRIVRIQNKSSLWFKKCTSCNRRVYPIGNAITSSCSICNNESISFVRRFMLKVIVSDGDSEAYITMFDATEHLTGCNVVEYFNNLSQV

Query:  QNKESSEYYQNLVLAEDKKYYFLVRLN
          KE S YY+ LVL++DK++ FLV+++
Subjt:  QNKESSEYYQNLVLAEDKKYYFLVRLN

A0A1S4AI89 replication protein A 70 kDa DNA-binding subunit B-like2.8e-1536.22Show/hide
Query:  FCSFIGRIVRIQNKSSLWFKKCTSCNRRVYPIGNAITSSCSICNNESISFVRRFMLKVIVSDGDSEAYITMFDATEHLTGCNVVEYFNNLSQVQNKESSE
        +  F  RI  I NK   W+  C  C ++V  I N   + C  C  E++ +  R++LK+ V D     Y+T+F++T +L GC+V  Y  ++S  QNKE S+
Subjt:  FCSFIGRIVRIQNKSSLWFKKCTSCNRRVYPIGNAITSSCSICNNESISFVRRFMLKVIVSDGDSEAYITMFDATEHLTGCNVVEYFNNLSQVQNKESSE

Query:  YYQNLVLAEDKKYYFLVRLNKDGERDR
        +Y+ LVL+ +KK+ FLV+++     DR
Subjt:  YYQNLVLAEDKKYYFLVRLNKDGERDR

A0A1S4BAI4 replication protein A 70 kDa DNA-binding subunit B-like5.3e-1433.86Show/hide
Query:  FCSFIGRIVRIQNKSSLWFKKCTSCNRRVYPIGNAITSSCSICNNESISFVRRFMLKVIVSDGDSEAYITMFDATEHLTGCNVVEYFNNLSQVQNKESSE
        +  F  RI  I NK   W+  C  C ++V  I N   + C  C  E++ +  R++LK+ V D     Y+T+F++T +L GC+V  Y  ++S  Q KE  +
Subjt:  FCSFIGRIVRIQNKSSLWFKKCTSCNRRVYPIGNAITSSCSICNNESISFVRRFMLKVIVSDGDSEAYITMFDATEHLTGCNVVEYFNNLSQVQNKESSE

Query:  YYQNLVLAEDKKYYFLVRLNKDGERDR
        +Y+ LVL+ +K++ FLV+++     DR
Subjt:  YYQNLVLAEDKKYYFLVRLNKDGERDR

A0A1S4CG46 replication protein A 70 kDa DNA-binding subunit A-like2.4e-1433.86Show/hide
Query:  FCSFIGRIVRIQNKSSLWFKKCTSCNRRVYPIGNAITSSCSICNNESISFVRRFMLKVIVSDGDSEAYITMFDATEHLTGCNVVEYFNNLSQVQNKESSE
        +  F  RI  I NK   W+  C  C ++V  I N   + C  C  E++ +  +++LK+ V D     Y+T+F++T +L GC+V  Y  ++S  Q KE S+
Subjt:  FCSFIGRIVRIQNKSSLWFKKCTSCNRRVYPIGNAITSSCSICNNESISFVRRFMLKVIVSDGDSEAYITMFDATEHLTGCNVVEYFNNLSQVQNKESSE

Query:  YYQNLVLAEDKKYYFLVRLNKDGERDR
        +Y+ LVL+ +K++ FLV+++     DR
Subjt:  YYQNLVLAEDKKYYFLVRLNKDGERDR

A0A6A4KQR7 Rep_fac-A_C domain-containing protein (Fragment)1.5e-1328.24Show/hide
Query:  VKKEFCSFIGRIVRIQNKSSLWFKKCTSCNRRVYPIGNAITSSCSICNNESISFVRRFMLKVIVSDGDSEAYITMFDATEHLTGCNVVEYFNNLSQVQNK
        ++K +C F G I+ I+N   +W++ C  C+++V+ I     + C  C + +I    R+M+K+ V DG  +  +T+FDA + L GC + E+   L+  +  
Subjt:  VKKEFCSFIGRIVRIQNKSSLWFKKCTSCNRRVYPIGNAITSSCSICNNESISFVRRFMLKVIVSDGDSEAYITMFDATEHLTGCNVVEYFNNLSQVQNK

Query:  ESSEYYQNLVLAEDKKYYFLVRLNKDGERDR
        E++++Y++L+    ++Y F  + N   ++D+
Subjt:  ESSEYYQNLVLAEDKKYYFLVRLNKDGERDR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGTCTTCTGAAGTGTGTCTAAATGATATTATTTTGGGAAAAGTGAAAAAAGAATTTTGCAGTTTCATAGGAAGAATTGTGAGAATTCAAAATAAAAGTTCACTTTG
GTTCAAAAAGTGTACATCTTGCAATAGAAGAGTATATCCAATAGGAAATGCTATCACAAGTTCATGTTCAATATGTAATAATGAATCTATTTCATTCGTACGAAGATTCA
TGTTAAAAGTGATAGTTTCAGATGGGGATTCAGAAGCCTACATTACCATGTTTGATGCTACTGAGCATTTAACAGGTTGTAATGTAGTTGAGTATTTCAATAATCTATCT
CAGGTTCAAAATAAGGAGAGTAGTGAATATTACCAAAACTTGGTTTTAGCCGAAGACAAGAAATACTACTTTTTAGTTAGATTGAATAAGGATGGAGAAAGAGATAGATA
G
mRNA sequenceShow/hide mRNA sequence
ATGGAGTCTTCTGAAGTGTGTCTAAATGATATTATTTTGGGAAAAGTGAAAAAAGAATTTTGCAGTTTCATAGGAAGAATTGTGAGAATTCAAAATAAAAGTTCACTTTG
GTTCAAAAAGTGTACATCTTGCAATAGAAGAGTATATCCAATAGGAAATGCTATCACAAGTTCATGTTCAATATGTAATAATGAATCTATTTCATTCGTACGAAGATTCA
TGTTAAAAGTGATAGTTTCAGATGGGGATTCAGAAGCCTACATTACCATGTTTGATGCTACTGAGCATTTAACAGGTTGTAATGTAGTTGAGTATTTCAATAATCTATCT
CAGGTTCAAAATAAGGAGAGTAGTGAATATTACCAAAACTTGGTTTTAGCCGAAGACAAGAAATACTACTTTTTAGTTAGATTGAATAAGGATGGAGAAAGAGATAGATA
G
Protein sequenceShow/hide protein sequence
MESSEVCLNDIILGKVKKEFCSFIGRIVRIQNKSSLWFKKCTSCNRRVYPIGNAITSSCSICNNESISFVRRFMLKVIVSDGDSEAYITMFDATEHLTGCNVVEYFNNLS
QVQNKESSEYYQNLVLAEDKKYYFLVRLNKDGERDR