; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Sed0002756 (gene) of Chayote v1 genome

Gene IDSed0002756
OrganismSechium edule (Chayote v1)
DescriptionRING-H2 finger protein ATL56-like
Genome locationLG01:12107659..12108595
RNA-Seq ExpressionSed0002756
SyntenySed0002756
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR001841 - Zinc finger, RING-type
IPR013083 - Zinc finger, RING/FYVE/PHD-type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TQD71521.1 hypothetical protein C1H46_042940 [Malus baccata]1.4e-3458.96Show/hide
Query:  MEIVVSAALLLVGIAVLVLIHVCIVGRAF-RG-EEGERIIWRRS-----KLSNEDLEKLPCYEYKSGEKTERRNGVDLECVVCLESFKIGEICRLLPNCR
        MEI++S  LL VG+AVLV+IHVCI+GRAF RG ++G  ++ R S     K+SNE+L  LPC++Y + EK    N   ++C VCLESFK GE CRLLPNCR
Subjt:  MEIVVSAALLLVGIAVLVLIHVCIVGRAF-RG-EEGERIIWRRS-----KLSNEDLEKLPCYEYKSGEKTERRNGVDLECVVCLESFKIGEICRLLPNCR

Query:  HSFHVQCIDSWLFNTPFCPICRTCAFVPKIGLAL
        HSFH QC+DSWL  TP CP+CRTCA  PKI ++L
Subjt:  HSFHVQCIDSWLFNTPFCPICRTCAFVPKIGLAL

TQD76870.1 hypothetical protein C1H46_037576 [Malus baccata]8.4e-3559.7Show/hide
Query:  MEIVVSAALLLVGIAVLVLIHVCIVGRAF-RG-EEGERIIWRRS-----KLSNEDLEKLPCYEYKSGEKTERRNGVDLECVVCLESFKIGEICRLLPNCR
        MEI++S  LL VG+AVLV+IHVCI+GRAF RG ++G  ++ R S     K+SNE+L  LPC++Y + EK    N   ++C VCLESFK GE CRLLPNCR
Subjt:  MEIVVSAALLLVGIAVLVLIHVCIVGRAF-RG-EEGERIIWRRS-----KLSNEDLEKLPCYEYKSGEKTERRNGVDLECVVCLESFKIGEICRLLPNCR

Query:  HSFHVQCIDSWLFNTPFCPICRTCAFVPKIGLAL
        HSFH QCIDSWL  TP CP+CRTCA  PKI ++L
Subjt:  HSFHVQCIDSWLFNTPFCPICRTCAFVPKIGLAL

XP_010101192.2 RING-H2 finger protein ATL80 [Morus notabilis]2.4e-3455.1Show/hide
Query:  MVMEIVVSAALLLVGIAVLVLIHVCIVGRAF-RGEEG-------ERIIWRRSKLSNEDLEKLPCYEYK-SGEKTERRNGVDLECVVCLESFKIGEICRLL
        MVMEIV+S  LL VGIAVLV+IH+CIVGRAF RG +G         I+    ++S+EDL+ +PC++Y  SGEK        ++C VCLE+FK G+ CRLL
Subjt:  MVMEIVVSAALLLVGIAVLVLIHVCIVGRAF-RGEEG-------ERIIWRRSKLSNEDLEKLPCYEYK-SGEKTERRNGVDLECVVCLESFKIGEICRLL

Query:  PNCRHSFHVQCIDSWLFNTPFCPICRTCAFVPKIGLALEHQNDGIRQ
        P+C HSFH QCIDSWL  TP CPICRTCA   KIG+ L  +  G+ Q
Subjt:  PNCRHSFHVQCIDSWLFNTPFCPICRTCAFVPKIGLALEHQNDGIRQ

XP_022954431.1 RING-H2 finger protein ATL56-like [Cucurbita moschata]4.4e-5280.43Show/hide
Query:  MVMEIVVSAALLLVGIAVLVLIHVCIVGRAFRGE-EGERIIWRRS---KLSNEDLEKLPCYEYKSGEKTERRNGVDLECVVCLESFKIGEICRLLPNCRH
        MVMEIVVSA LLLVGIAVLV+IHVCIVGRAFRGE EG   IWR +    LSN+DLEKLPCYEYKSGEK +  NGVDLECVVCLE FK GE CRLLPNCRH
Subjt:  MVMEIVVSAALLLVGIAVLVLIHVCIVGRAFRGE-EGERIIWRRS---KLSNEDLEKLPCYEYKSGEKTERRNGVDLECVVCLESFKIGEICRLLPNCRH

Query:  SFHVQCIDSWLFNTPFCPICRTCAFVPKIGLALEHQND
        SFHV+CIDSWL  TP CPICRTCA VPK GL LEHQND
Subjt:  SFHVQCIDSWLFNTPFCPICRTCAFVPKIGLALEHQND

XP_022994122.1 RING-H2 finger protein ATL56-like [Cucurbita maxima]5.8e-5280.43Show/hide
Query:  MVMEIVVSAALLLVGIAVLVLIHVCIVGRAFRGE-EGERIIWRRS---KLSNEDLEKLPCYEYKSGEKTERRNGVDLECVVCLESFKIGEICRLLPNCRH
        MVMEIVVSA LLLVGIAVLV+IHVCIVGRAFRGE EG   IWR +    LSN+DLEKLPCYEYKSGEK +  NGVDLECVVCLE FK GE CRLLPNCRH
Subjt:  MVMEIVVSAALLLVGIAVLVLIHVCIVGRAFRGE-EGERIIWRRS---KLSNEDLEKLPCYEYKSGEKTERRNGVDLECVVCLESFKIGEICRLLPNCRH

Query:  SFHVQCIDSWLFNTPFCPICRTCAFVPKIGLALEHQND
        SFHV+CIDSWL  TP CPICRTCA VPK GL LEHQND
Subjt:  SFHVQCIDSWLFNTPFCPICRTCAFVPKIGLALEHQND

TrEMBL top hitse value%identityAlignment
A0A540KBC1 RING-type domain-containing protein6.9e-3558.96Show/hide
Query:  MEIVVSAALLLVGIAVLVLIHVCIVGRAF-RG-EEGERIIWRRS-----KLSNEDLEKLPCYEYKSGEKTERRNGVDLECVVCLESFKIGEICRLLPNCR
        MEI++S  LL VG+AVLV+IHVCI+GRAF RG ++G  ++ R S     K+SNE+L  LPC++Y + EK    N   ++C VCLESFK GE CRLLPNCR
Subjt:  MEIVVSAALLLVGIAVLVLIHVCIVGRAF-RG-EEGERIIWRRS-----KLSNEDLEKLPCYEYKSGEKTERRNGVDLECVVCLESFKIGEICRLLPNCR

Query:  HSFHVQCIDSWLFNTPFCPICRTCAFVPKIGLAL
        HSFH QC+DSWL  TP CP+CRTCA  PKI ++L
Subjt:  HSFHVQCIDSWLFNTPFCPICRTCAFVPKIGLAL

A0A540KRN2 RING-type domain-containing protein4.0e-3559.7Show/hide
Query:  MEIVVSAALLLVGIAVLVLIHVCIVGRAF-RG-EEGERIIWRRS-----KLSNEDLEKLPCYEYKSGEKTERRNGVDLECVVCLESFKIGEICRLLPNCR
        MEI++S  LL VG+AVLV+IHVCI+GRAF RG ++G  ++ R S     K+SNE+L  LPC++Y + EK    N   ++C VCLESFK GE CRLLPNCR
Subjt:  MEIVVSAALLLVGIAVLVLIHVCIVGRAF-RG-EEGERIIWRRS-----KLSNEDLEKLPCYEYKSGEKTERRNGVDLECVVCLESFKIGEICRLLPNCR

Query:  HSFHVQCIDSWLFNTPFCPICRTCAFVPKIGLAL
        HSFH QCIDSWL  TP CP+CRTCA  PKI ++L
Subjt:  HSFHVQCIDSWLFNTPFCPICRTCAFVPKIGLAL

A0A6J1GQW8 RING-H2 finger protein ATL56-like2.1e-5280.43Show/hide
Query:  MVMEIVVSAALLLVGIAVLVLIHVCIVGRAFRGE-EGERIIWRRS---KLSNEDLEKLPCYEYKSGEKTERRNGVDLECVVCLESFKIGEICRLLPNCRH
        MVMEIVVSA LLLVGIAVLV+IHVCIVGRAFRGE EG   IWR +    LSN+DLEKLPCYEYKSGEK +  NGVDLECVVCLE FK GE CRLLPNCRH
Subjt:  MVMEIVVSAALLLVGIAVLVLIHVCIVGRAFRGE-EGERIIWRRS---KLSNEDLEKLPCYEYKSGEKTERRNGVDLECVVCLESFKIGEICRLLPNCRH

Query:  SFHVQCIDSWLFNTPFCPICRTCAFVPKIGLALEHQND
        SFHV+CIDSWL  TP CPICRTCA VPK GL LEHQND
Subjt:  SFHVQCIDSWLFNTPFCPICRTCAFVPKIGLALEHQND

A0A6J1JUU5 RING-H2 finger protein ATL56-like2.8e-5280.43Show/hide
Query:  MVMEIVVSAALLLVGIAVLVLIHVCIVGRAFRGE-EGERIIWRRS---KLSNEDLEKLPCYEYKSGEKTERRNGVDLECVVCLESFKIGEICRLLPNCRH
        MVMEIVVSA LLLVGIAVLV+IHVCIVGRAFRGE EG   IWR +    LSN+DLEKLPCYEYKSGEK +  NGVDLECVVCLE FK GE CRLLPNCRH
Subjt:  MVMEIVVSAALLLVGIAVLVLIHVCIVGRAFRGE-EGERIIWRRS---KLSNEDLEKLPCYEYKSGEKTERRNGVDLECVVCLESFKIGEICRLLPNCRH

Query:  SFHVQCIDSWLFNTPFCPICRTCAFVPKIGLALEHQND
        SFHV+CIDSWL  TP CPICRTCA VPK GL LEHQND
Subjt:  SFHVQCIDSWLFNTPFCPICRTCAFVPKIGLALEHQND

A0A6P3YXL3 RING-H2 finger protein ATL74-like1.5e-3459.56Show/hide
Query:  MVMEIVVSAALLLVGIAVLVLIHVCIVGRAF-RGEEG--ERIIWRRS----KLSNEDLEKLPCYEYKSGEKTERRNGVDLECVVCLESFKIGEICRLLPN
        MVMEIV+S  LL VGIAVLV+IHVCIVGRAF RG +G    ++ R S    ++SNEDL+ LPC++Y  G + +  +   ++C VCLE+FK GE CRLLPN
Subjt:  MVMEIVVSAALLLVGIAVLVLIHVCIVGRAF-RGEEG--ERIIWRRS----KLSNEDLEKLPCYEYKSGEKTERRNGVDLECVVCLESFKIGEICRLLPN

Query:  CRHSFHVQCIDSWLFNTPFCPICRTCAFVPKIGLAL
        CRHSFH  CIDSWL  TP CPICRTCA  PK+ + L
Subjt:  CRHSFHVQCIDSWLFNTPFCPICRTCAFVPKIGLAL

SwissProt top hitse value%identityAlignment
P0C034 RING-H2 finger protein ATL107.9e-1258Show/hide
Query:  GVDLECVVCLESFKIGEICRLLPNCRHSFHVQCIDSWLFNTPFCPICRTC
        G+D ECV+CL  F  GE  RLLP C H FHV+CID WL     CP CR C
Subjt:  GVDLECVVCLESFKIGEICRLLPNCRHSFHVQCIDSWLFNTPFCPICRTC

Q5EAE9 RING-H2 finger protein ATL437.9e-1240.79Show/hide
Query:  RRSKLSNEDLEKLPCYEYKSGEKTERRNGVDLECVVCLESFKIGEICRLLPNCRHSFHVQCIDSWLFNTPFCPICR
        + S +    +E LP + +  G  +  ++G  LEC VCL  F+  E+ RLLP C+H+FHV+C+D+WL     CP+CR
Subjt:  RRSKLSNEDLEKLPCYEYKSGEKTERRNGVDLECVVCLESFKIGEICRLLPNCRHSFHVQCIDSWLFNTPFCPICR

Q7XLY8 E3 ubiquitin-protein ligase Os04g05909001.3e-1136.54Show/hide
Query:  GRAFRGEEGERIIWRRSKLSNED---LEKLPCYEYKSGEKTERRNGVDLECVVCLESFKIGEICRLLPNCRHSFHVQCIDSWLFNTPFCPICRTCAFVPK
        GR   G+      W  S  S  D   + K+   +Y+ G+          +C VCL  F  GE  RLLP C H+FH QCID+WL +   CP+CR       
Subjt:  GRAFRGEEGERIIWRRSKLSNED---LEKLPCYEYKSGEKTERRNGVDLECVVCLESFKIGEICRLLPNCRHSFHVQCIDSWLFNTPFCPICRTCAFVPK

Query:  IGLA
        +GLA
Subjt:  IGLA

Q8LBA0 NEP1-interacting protein-like 29.3e-1347.22Show/hide
Query:  LSNEDLEKLPCYEYKSGEKTERRNGVDLECVVCLESFKIGEICRLLPNCRHSFHVQCIDSWLFNTPFCPICR
        LS + L KLPCY   S E   R+      C +CL+  K GEI R LP C H+FH+ C+D WL     CPICR
Subjt:  LSNEDLEKLPCYEYKSGEKTERRNGVDLECVVCLESFKIGEICRLLPNCRHSFHVQCIDSWLFNTPFCPICR

Q8W571 RING-H2 finger protein ATL321.9e-1342.86Show/hide
Query:  RRSKLSNEDLEKLPCYEYKSGEKTERRNGVDLECVVCLESFKIGEICRLLPNCRHSFHVQCIDSWLFNTPFCPICRT
        RR  L N  +E  P + Y S  K  +    DLEC +CL   +  E  RLLP C H FH+ CID+WL++   CP+CR+
Subjt:  RRSKLSNEDLEKLPCYEYKSGEKTERRNGVDLECVVCLESFKIGEICRLLPNCRHSFHVQCIDSWLFNTPFCPICRT

Arabidopsis top hitse value%identityAlignment
AT1G49220.1 RING/U-box superfamily protein5.6e-1358Show/hide
Query:  GVDLECVVCLESFKIGEICRLLPNCRHSFHVQCIDSWLFNTPFCPICRTC
        G+D ECV+CL  F  GE  RLLP C H FHV+CID WL     CP CR C
Subjt:  GVDLECVVCLESFKIGEICRLLPNCRHSFHVQCIDSWLFNTPFCPICRTC

AT1G74410.1 RING/U-box superfamily protein6.6e-1447.22Show/hide
Query:  LSNEDLEKLPCYEYKSGEKTERRNGVDLECVVCLESFKIGEICRLLPNCRHSFHVQCIDSWLFNTPFCPICR
        LS + L KLPCY   S E   R+      C +CL+  K GEI R LP C H+FH+ C+D WL     CPICR
Subjt:  LSNEDLEKLPCYEYKSGEKTERRNGVDLECVVCLESFKIGEICRLLPNCRHSFHVQCIDSWLFNTPFCPICR

AT2G27940.1 RING/U-box superfamily protein1.3e-1239.47Show/hide
Query:  RSKLSNEDLEKLPCYEYKSGEKTERRNGVDLECVVCLESFKIGEICRLLPNCRHSFHVQCIDSWLFNTPFCPICRT
        R  L ++ +  LP Y Y    K  +RN    +CV+CL  F+ GE  +++P+C H FHV C+D+WL +   CP+CR+
Subjt:  RSKLSNEDLEKLPCYEYKSGEKTERRNGVDLECVVCLESFKIGEICRLLPNCRHSFHVQCIDSWLFNTPFCPICRT

AT4G40070.1 RING/U-box superfamily protein1.3e-1442.86Show/hide
Query:  RRSKLSNEDLEKLPCYEYKSGEKTERRNGVDLECVVCLESFKIGEICRLLPNCRHSFHVQCIDSWLFNTPFCPICRT
        RR  L N  +E  P + Y S  K  +    DLEC +CL   +  E  RLLP C H FH+ CID+WL++   CP+CR+
Subjt:  RRSKLSNEDLEKLPCYEYKSGEKTERRNGVDLECVVCLESFKIGEICRLLPNCRHSFHVQCIDSWLFNTPFCPICRT

AT5G05810.1 RING/U-box superfamily protein5.6e-1340.79Show/hide
Query:  RRSKLSNEDLEKLPCYEYKSGEKTERRNGVDLECVVCLESFKIGEICRLLPNCRHSFHVQCIDSWLFNTPFCPICR
        + S +    +E LP + +  G  +  ++G  LEC VCL  F+  E+ RLLP C+H+FHV+C+D+WL     CP+CR
Subjt:  RRSKLSNEDLEKLPCYEYKSGEKTERRNGVDLECVVCLESFKIGEICRLLPNCRHSFHVQCIDSWLFNTPFCPICR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTATGGAGATTGTAGTATCAGCTGCTCTGTTGCTGGTTGGGATCGCTGTTTTGGTGCTGATCCATGTCTGTATTGTTGGGAGAGCTTTCAGAGGAGAAGAAGGGGA
GAGGATTATATGGAGAAGAAGCAAACTTTCAAATGAGGATTTGGAGAAGCTTCCATGTTATGAGTACAAATCAGGGGAAAAAACAGAGAGAAGAAATGGAGTTGATTTGG
AATGTGTGGTTTGTTTGGAGAGTTTCAAAATTGGGGAAATTTGCAGATTGTTGCCAAATTGTAGACATAGTTTCCATGTTCAGTGCATAGATTCTTGGCTTTTCAACACA
CCCTTTTGCCCAATTTGCAGAACTTGTGCTTTTGTTCCCAAAATTGGCTTGGCTTTGGAGCACCAAAATGATGGGATTCGCCAAATTCAGCTCAATTGA
mRNA sequenceShow/hide mRNA sequence
GAGACAGAGACATTCAAACACAAACCTCAACAAAAACACAAACACAAACACACAAGACCCACAAAAAAAAAAACCCCTTTCTTGGATTGGTTGGATTTTGAATTCAAGAA
CCATGGTTATGGAGATTGTAGTATCAGCTGCTCTGTTGCTGGTTGGGATCGCTGTTTTGGTGCTGATCCATGTCTGTATTGTTGGGAGAGCTTTCAGAGGAGAAGAAGGG
GAGAGGATTATATGGAGAAGAAGCAAACTTTCAAATGAGGATTTGGAGAAGCTTCCATGTTATGAGTACAAATCAGGGGAAAAAACAGAGAGAAGAAATGGAGTTGATTT
GGAATGTGTGGTTTGTTTGGAGAGTTTCAAAATTGGGGAAATTTGCAGATTGTTGCCAAATTGTAGACATAGTTTCCATGTTCAGTGCATAGATTCTTGGCTTTTCAACA
CACCCTTTTGCCCAATTTGCAGAACTTGTGCTTTTGTTCCCAAAATTGGCTTGGCTTTGGAGCACCAAAATGATGGGATTCGCCAAATTCAGCTCAATTGAAGAACGTTT
TTTTTTCAATCAAGTTCGCCGGGAAATGTCACTGCCGCTGCTTCCGCCGCCGGGTGCGGCGGCCGGAGGGAGATGAACTTCAGAAGAAGCACCGCCGTCAATAAGTGGGA
TGGACGTTATTACTGTTATTGGTGAAAAAGTTTGAGAATTTGGCAAATGGAAGGGGCTGAGAAGAAGGGGGTAAAAGTAGTGTTATGGATAATTTTGTGTGTGTGTGTGT
TTTTTTTTTTTTTTTTGCTCTTGTTAATTTTTTTAAAAACTAGGTTTGTATGTCTGAAGTTGAGGAATTTGGGAGATTAAGGTCCTTTTTTATGTTTTGAGATTTGAGGT
GCATATGGTATTGGATTAATTCAGTGATGAAAAATTAAATAATAATGGTAATTATTA
Protein sequenceShow/hide protein sequence
MVMEIVVSAALLLVGIAVLVLIHVCIVGRAFRGEEGERIIWRRSKLSNEDLEKLPCYEYKSGEKTERRNGVDLECVVCLESFKIGEICRLLPNCRHSFHVQCIDSWLFNT
PFCPICRTCAFVPKIGLALEHQNDGIRQIQLN