; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Sed0002776 (gene) of Chayote v1 genome

Gene IDSed0002776
OrganismSechium edule (Chayote v1)
Description30S ribosomal protein S17, chloroplastic
Genome locationLG07:11259198..11260006
RNA-Seq ExpressionSed0002776
SyntenySed0002776
Gene Ontology termsGO:0032544 - plastid translation (biological process)
GO:0005739 - mitochondrion (cellular component)
GO:0005840 - ribosome (cellular component)
GO:0009507 - chloroplast (cellular component)
GO:0003729 - mRNA binding (molecular function)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0019843 - rRNA binding (molecular function)
InterPro domainsIPR000266 - Ribosomal protein S17/S11
IPR012340 - Nucleic acid-binding, OB-fold
IPR019979 - Ribosomal protein S17, conserved site
IPR019984 - 30S ribosomal protein S17


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6593467.1 30S ribosomal protein S17, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]9.4e-6786.42Show/hide
Query:  MSATLTPTSLLQIPPLQRPKKQLSISTNFTHGATPLSFLSKPSPSPPPPQTLGFLPSIRAMRSLQGRVVCATSDKTVAVEVVRLAPHPKYKRRIRIKKKY
        M ATL P+S+LQIPPLQR KK LS+ST F HG+TPLSFLSKP+ S  PPQTL FLPSIRAM+SLQGRVVCAT+DKTVAVEVVRLAPHPKYKRRIRIKKKY
Subjt:  MSATLTPTSLLQIPPLQRPKKQLSISTNFTHGATPLSFLSKPSPSPPPPQTLGFLPSIRAMRSLQGRVVCATSDKTVAVEVVRLAPHPKYKRRIRIKKKY

Query:  QAHDPDNQFKVGDFVELEKCRPISKTKTFLAIPVPARNSKQKAAEAEAGDLGIPLESQQQQV
        QAHDPDNQFKVGDFVELEKCRPISK KTFLAIPVPARNSKQK AEA AGDLGIPLESQQQ +
Subjt:  QAHDPDNQFKVGDFVELEKCRPISKTKTFLAIPVPARNSKQKAAEAEAGDLGIPLESQQQQV

XP_022964008.1 30S ribosomal protein S17, chloroplastic-like [Cucurbita moschata]8.5e-6888.12Show/hide
Query:  MSATLTPTSLLQIPPLQRPKKQLSISTNFTHGATPLSFLSKPSPSPPPPQTLGFLPSIRAMRSLQGRVVCATSDKTVAVEVVRLAPHPKYKRRIRIKKKY
        M ATL P+S+LQIPPLQR KK LS+ST+F HG+TPLSFLSKP+PS  PPQTL FLPSIRAM+SLQGRVVCAT+DKTVAVEVVRLAPHPKYKRRIRIKKKY
Subjt:  MSATLTPTSLLQIPPLQRPKKQLSISTNFTHGATPLSFLSKPSPSPPPPQTLGFLPSIRAMRSLQGRVVCATSDKTVAVEVVRLAPHPKYKRRIRIKKKY

Query:  QAHDPDNQFKVGDFVELEKCRPISKTKTFLAIPVPARNSKQKAAEAEAGDLGIPLESQQQ
        QAHDPDNQFKVGDFVELEKCRPISK KTFLAIPVPARNSKQK AEA AGDLGIPLESQQQ
Subjt:  QAHDPDNQFKVGDFVELEKCRPISKTKTFLAIPVPARNSKQKAAEAEAGDLGIPLESQQQ

XP_023000403.1 30S ribosomal protein S17, chloroplastic-like [Cucurbita maxima]2.2e-6888.75Show/hide
Query:  MSATLTPTSLLQIPPLQRPKKQLSISTNFTHGATPLSFLSKPSPSPPPPQTLGFLPSIRAMRSLQGRVVCATSDKTVAVEVVRLAPHPKYKRRIRIKKKY
        M ATLTP+S+LQIPPLQR KK LS+ST+F HG+TPLSFLSKP+PS  PPQTL FLPSIRAM+SLQGRVVCAT+DKTVAVEVVRLAPHPKYKRRIRIKKKY
Subjt:  MSATLTPTSLLQIPPLQRPKKQLSISTNFTHGATPLSFLSKPSPSPPPPQTLGFLPSIRAMRSLQGRVVCATSDKTVAVEVVRLAPHPKYKRRIRIKKKY

Query:  QAHDPDNQFKVGDFVELEKCRPISKTKTFLAIPVPARNSKQKAAEAEAGDLGIPLESQQQ
        QAHDPDNQFKVGDFVELEKCRPISK KTFLAIPVPARNSKQK AEA AGDLGIPLESQQQ
Subjt:  QAHDPDNQFKVGDFVELEKCRPISKTKTFLAIPVPARNSKQKAAEAEAGDLGIPLESQQQ

XP_023513636.1 30S ribosomal protein S17, chloroplastic-like [Cucurbita pepo subsp. pepo]2.5e-6787.5Show/hide
Query:  MSATLTPTSLLQIPPLQRPKKQLSISTNFTHGATPLSFLSKPSPSPPPPQTLGFLPSIRAMRSLQGRVVCATSDKTVAVEVVRLAPHPKYKRRIRIKKKY
        M ATL P+S+LQIPPLQR KK LS+ST+F HG+TPLSFLSKP+PS  PPQTL FLPSIRAM+SLQGRVVCAT+DKTVAVEVVRLAPHPKYKRRIRIKKKY
Subjt:  MSATLTPTSLLQIPPLQRPKKQLSISTNFTHGATPLSFLSKPSPSPPPPQTLGFLPSIRAMRSLQGRVVCATSDKTVAVEVVRLAPHPKYKRRIRIKKKY

Query:  QAHDPDNQFKVGDFVELEKCRPISKTKTFLAIPVPARNSKQKAAEAEAGDLGIPLESQQQ
        QAHDPDNQFKVGDFVELEKCRPISK KTFLAIPVPARNSK+K AEA AGDLGIPLESQQQ
Subjt:  QAHDPDNQFKVGDFVELEKCRPISKTKTFLAIPVPARNSKQKAAEAEAGDLGIPLESQQQ

XP_023548191.1 30S ribosomal protein S17, chloroplastic-like [Cucurbita pepo subsp. pepo]6.8e-6585Show/hide
Query:  MSATLTPTSLLQIPPLQRPKKQLSISTNFTHGATPLSFLSKPSPSPPPPQTLGFLPSIRAMRSLQGRVVCATSDKTVAVEVVRLAPHPKYKRRIRIKKKY
        MSATL+P+S LQIPPLQR  K LS+ST+F HG+ PLSFLSKPSPS    QT  FLPSI+AMRSLQGRVVCAT+DKTVAVEVVRLAPHPKYKRRIRIKKKY
Subjt:  MSATLTPTSLLQIPPLQRPKKQLSISTNFTHGATPLSFLSKPSPSPPPPQTLGFLPSIRAMRSLQGRVVCATSDKTVAVEVVRLAPHPKYKRRIRIKKKY

Query:  QAHDPDNQFKVGDFVELEKCRPISKTKTFLAIPVPARNSKQKAAEAEAGDLGIPLESQQQ
        QAHDPDN+FKVGDFVELEKCRPISK KTFLAIPVPARNSK KAAEA AG+LGIPLESQQQ
Subjt:  QAHDPDNQFKVGDFVELEKCRPISKTKTFLAIPVPARNSKQKAAEAEAGDLGIPLESQQQ

TrEMBL top hitse value%identityAlignment
A0A1S3CGC8 30S ribosomal protein S17, chloroplastic8.1e-6484.24Show/hide
Query:  MSATLTPTSLLQIPPLQRPKKQLSISTNFTHGATPLSFLSKPSPSPPP--PQTLGFLPSIRAMRSLQGRVVCATSDKTVAVEVVRLAPHPKYKRRIRIKK
        MS TLT +SLLQIPPLQ  KK LSIS++F HG+TPLSFLSKPS SP P   QT  FLPSIRAMRSLQGRVVCAT+DKTVAVEVVRLAPHPKYKRRIRIKK
Subjt:  MSATLTPTSLLQIPPLQRPKKQLSISTNFTHGATPLSFLSKPSPSPPP--PQTLGFLPSIRAMRSLQGRVVCATSDKTVAVEVVRLAPHPKYKRRIRIKK

Query:  KYQAHDPDNQFKVGDFVELEKCRPISKTKTFLAIPVPARNSKQKAAE-AEAGDLGIPLESQQQQV
        KYQAHDPDNQFKVGDFVELEKCRPISK KTFLAIPVPAR SK+KAAE  E G+LGIPLESQQ+QV
Subjt:  KYQAHDPDNQFKVGDFVELEKCRPISKTKTFLAIPVPARNSKQKAAE-AEAGDLGIPLESQQQQV

A0A6J1GQP3 30S ribosomal protein S17, chloroplastic-like5.2e-6383.54Show/hide
Query:  ATLTPTSLLQIPPLQRPKKQLSISTNFTHGATPLSFLSKPSPSPPPPQTLGFLPSIRAMRSLQGRVVCATSDKTVAVEVVRLAPHPKYKRRIRIKKKYQA
        + L+P+S LQIPPLQR  K LSIST+F HG+ PLSFLSKPSPS    QT  FLPSI+AMRSLQGRVVCAT+DKTVAVEVVRLAPHPKYKRRIRIKKKYQA
Subjt:  ATLTPTSLLQIPPLQRPKKQLSISTNFTHGATPLSFLSKPSPSPPPPQTLGFLPSIRAMRSLQGRVVCATSDKTVAVEVVRLAPHPKYKRRIRIKKKYQA

Query:  HDPDNQFKVGDFVELEKCRPISKTKTFLAIPVPARNSKQKAAEAEAGDLGIPLESQQQ
        HDPDN+FKVGDFVELEKCRPISK KTFLAIPVPARNSK KAAEA AG+LGIPLESQ+Q
Subjt:  HDPDNQFKVGDFVELEKCRPISKTKTFLAIPVPARNSKQKAAEAEAGDLGIPLESQQQ

A0A6J1HJK0 30S ribosomal protein S17, chloroplastic4.1e-6888.12Show/hide
Query:  MSATLTPTSLLQIPPLQRPKKQLSISTNFTHGATPLSFLSKPSPSPPPPQTLGFLPSIRAMRSLQGRVVCATSDKTVAVEVVRLAPHPKYKRRIRIKKKY
        M ATL P+S+LQIPPLQR KK LS+ST+F HG+TPLSFLSKP+PS  PPQTL FLPSIRAM+SLQGRVVCAT+DKTVAVEVVRLAPHPKYKRRIRIKKKY
Subjt:  MSATLTPTSLLQIPPLQRPKKQLSISTNFTHGATPLSFLSKPSPSPPPPQTLGFLPSIRAMRSLQGRVVCATSDKTVAVEVVRLAPHPKYKRRIRIKKKY

Query:  QAHDPDNQFKVGDFVELEKCRPISKTKTFLAIPVPARNSKQKAAEAEAGDLGIPLESQQQ
        QAHDPDNQFKVGDFVELEKCRPISK KTFLAIPVPARNSKQK AEA AGDLGIPLESQQQ
Subjt:  QAHDPDNQFKVGDFVELEKCRPISKTKTFLAIPVPARNSKQKAAEAEAGDLGIPLESQQQ

A0A6J1JVM9 30S ribosomal protein S17, chloroplastic-like4.0e-6383.75Show/hide
Query:  MSATLTPTSLLQIPPLQRPKKQLSISTNFTHGATPLSFLSKPSPSPPPPQTLGFLPSIRAMRSLQGRVVCATSDKTVAVEVVRLAPHPKYKRRIRIKKKY
        MSATL+ +S LQIPPLQR  K LS+ST+F HG+ PLSFLSKPSPS    QT  FLPSIRAMRSLQGRVVCAT+DKTVAVEVVRLAPHPKYKRRIRIKKKY
Subjt:  MSATLTPTSLLQIPPLQRPKKQLSISTNFTHGATPLSFLSKPSPSPPPPQTLGFLPSIRAMRSLQGRVVCATSDKTVAVEVVRLAPHPKYKRRIRIKKKY

Query:  QAHDPDNQFKVGDFVELEKCRPISKTKTFLAIPVPARNSKQKAAEAEAGDLGIPLESQQQ
        QAHDPDN+FKVGDFVELEKCRPISK KTFLAIPVPARNSK KAAEA  G+L IPLESQQQ
Subjt:  QAHDPDNQFKVGDFVELEKCRPISKTKTFLAIPVPARNSKQKAAEAEAGDLGIPLESQQQ

A0A6J1KMI9 30S ribosomal protein S17, chloroplastic1.1e-6888.75Show/hide
Query:  MSATLTPTSLLQIPPLQRPKKQLSISTNFTHGATPLSFLSKPSPSPPPPQTLGFLPSIRAMRSLQGRVVCATSDKTVAVEVVRLAPHPKYKRRIRIKKKY
        M ATLTP+S+LQIPPLQR KK LS+ST+F HG+TPLSFLSKP+PS  PPQTL FLPSIRAM+SLQGRVVCAT+DKTVAVEVVRLAPHPKYKRRIRIKKKY
Subjt:  MSATLTPTSLLQIPPLQRPKKQLSISTNFTHGATPLSFLSKPSPSPPPPQTLGFLPSIRAMRSLQGRVVCATSDKTVAVEVVRLAPHPKYKRRIRIKKKY

Query:  QAHDPDNQFKVGDFVELEKCRPISKTKTFLAIPVPARNSKQKAAEAEAGDLGIPLESQQQ
        QAHDPDNQFKVGDFVELEKCRPISK KTFLAIPVPARNSKQK AEA AGDLGIPLESQQQ
Subjt:  QAHDPDNQFKVGDFVELEKCRPISKTKTFLAIPVPARNSKQKAAEAEAGDLGIPLESQQQ

SwissProt top hitse value%identityAlignment
P16180 30S ribosomal protein S17, chloroplastic5.8e-4369.29Show/hide
Query:  LSISTNFTHGATPLSFLSKPSPSPPPPQTLGFLPSIRAMRSLQGRVVCATSDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFKVGDFVELEKCRP
        L +S+ F HG+TPLS LSKP+ S P  +    +P IRAM+++QGRVVCATSDKTVAVEVVRLAPHPKYKRR+R+KKKYQAHDPDNQFKVGD V LEK RP
Subjt:  LSISTNFTHGATPLSFLSKPSPSPPPPQTLGFLPSIRAMRSLQGRVVCATSDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFKVGDFVELEKCRP

Query:  ISKTKTFLAIPVPARNSKQKAAEAEAGD---LGIPLESQQ
        ISKTK+F+A+PV AR     A +AEAG    LG+PLESQQ
Subjt:  ISKTKTFLAIPVPARNSKQKAAEAEAGD---LGIPLESQQ

P17092 30S ribosomal protein S17, chloroplastic (Fragment)2.2e-3458.21Show/hide
Query:  FTHGATPLSFLSKPSPSP-PPPQTLGF-LPSIRAMRSLQGRVVCATSDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFKVGDFVELEKCRPISKT
        FT     L+  S P  SP    QT     P+I+AM++++G+VVCA+ +KTVAVEV RLAPHPKY++RIR+KKKYQAHDP+N FKVGD V+L K RPISK 
Subjt:  FTHGATPLSFLSKPSPSP-PPPQTLGF-LPSIRAMRSLQGRVVCATSDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFKVGDFVELEKCRPISKT

Query:  KTFLAIPVPARNSKQKAAEAEAGDLGIPLESQQQ
        KTFLA+P P+R SK+  +   +G+LGIPL+SQQ+
Subjt:  KTFLAIPVPARNSKQKAAEAEAGDLGIPLESQQQ

P82137 30S ribosomal protein S17, chloroplastic1.9e-3859.87Show/hide
Query:  LQRPKKQLSISTNFTHG-ATPLSFLS-----KPSPSPPPPQTLGFLPSIRAMRSLQGRVVCATSDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQF
        L +P    S    F HG  T LS L        S SPP   T    P I+AMRS+QG+V+CAT+DKTV VEVVRLAPHPKYKRR+R KKKYQAHDPDNQF
Subjt:  LQRPKKQLSISTNFTHG-ATPLSFLS-----KPSPSPPPPQTLGFLPSIRAMRSLQGRVVCATSDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQF

Query:  KVGDFVELEKCRPISKTKTFLAIPVPARNS---KQKAAEAEAGDLGIPLESQ
        KVGD+V+L+KCRPISKTKTFLA+    R S   + K  +A + +LGIPLESQ
Subjt:  KVGDFVELEKCRPISKTKTFLAIPVPARNS---KQKAAEAEAGDLGIPLESQ

Q9TJN6 30S ribosomal protein S17, chloroplastic3.9e-3162.81Show/hide
Query:  SPSPPPPQTLGFLPSIR--AMRSLQGRVVCATSDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFKVGDFVELEKCRPISKTKTFLAIPVPARNSK
        SP PPP  + G  P++R  A R L GRVV   +DKTV VEVVRLAPHPKYKRR RIKKKYQAHDPDNQFKVGD VEL+  RPISKTK FLAIP+P R+++
Subjt:  SPSPPPPQTLGFLPSIR--AMRSLQGRVVCATSDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFKVGDFVELEKCRPISKTKTFLAIPVPARNSK

Query:  QKAAEAEAGDLGIPLESQQQQ
        +K+       L  PL+S   Q
Subjt:  QKAAEAEAGDLGIPLESQQQQ

Q9ZST1 30S ribosomal protein S17, chloroplastic2.8e-2966.02Show/hide
Query:  IRAMRSLQGRVVCATSDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFKVGDFVELEKCRPISKTKTFLAIPVPARNSKQKAAEAEAGDLGIPLES
        I+A + L GRVV   +DKTV VEVVRLAPHPKYKRR RIKKKYQAHDPDNQFKVGD VEL + RPISKTK FLA+P+P R++++K+       L  PL+S
Subjt:  IRAMRSLQGRVVCATSDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFKVGDFVELEKCRPISKTKTFLAIPVPARNSKQKAAEAEAGDLGIPLES

Query:  QQQ
        Q Q
Subjt:  QQQ

Arabidopsis top hitse value%identityAlignment
AT1G79850.1 ribosomal protein S174.1e-4469.29Show/hide
Query:  LSISTNFTHGATPLSFLSKPSPSPPPPQTLGFLPSIRAMRSLQGRVVCATSDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFKVGDFVELEKCRP
        L +S+ F HG+TPLS LSKP+ S P  +    +P IRAM+++QGRVVCATSDKTVAVEVVRLAPHPKYKRR+R+KKKYQAHDPDNQFKVGD V LEK RP
Subjt:  LSISTNFTHGATPLSFLSKPSPSPPPPQTLGFLPSIRAMRSLQGRVVCATSDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFKVGDFVELEKCRP

Query:  ISKTKTFLAIPVPARNSKQKAAEAEAGD---LGIPLESQQ
        ISKTK+F+A+PV AR     A +AEAG    LG+PLESQQ
Subjt:  ISKTKTFLAIPVPARNSKQKAAEAEAGD---LGIPLESQQ


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTGCAACTCTAACTCCCACATCGCTTCTCCAAATTCCGCCATTGCAGAGGCCAAAGAAGCAGCTCTCAATCTCCACCAATTTCACCCATGGCGCGACTCCCCTCTC
CTTCCTCTCCAAGCCCTCCCCGTCCCCTCCGCCGCCCCAAACCCTAGGTTTCCTCCCCTCCATCAGAGCCATGAGATCCCTGCAAGGCCGCGTCGTCTGCGCCACCAGCG
ACAAGACCGTCGCCGTCGAGGTCGTGCGGTTGGCGCCGCACCCGAAGTACAAGCGGCGCATCCGAATCAAGAAGAAGTACCAGGCGCACGATCCGGATAACCAGTTCAAG
GTCGGCGACTTCGTGGAGCTTGAGAAATGCCGCCCGATCAGTAAGACGAAGACGTTCCTCGCCATTCCGGTGCCGGCGAGGAATTCGAAGCAGAAAGCGGCGGAAGCGGA
GGCTGGGGATCTAGGGATTCCGTTGGAGTCTCAACAGCAACAGGTTTAA
mRNA sequenceShow/hide mRNA sequence
GAATAATAAAAAAAATAAAAATCGACAGATAAGAAAACCCTCGGTCTTATCTTCGTCTTCATTTCAGATAACCCAAAAAAATGTCTGCAACTCTAACTCCCACATCGCTT
CTCCAAATTCCGCCATTGCAGAGGCCAAAGAAGCAGCTCTCAATCTCCACCAATTTCACCCATGGCGCGACTCCCCTCTCCTTCCTCTCCAAGCCCTCCCCGTCCCCTCC
GCCGCCCCAAACCCTAGGTTTCCTCCCCTCCATCAGAGCCATGAGATCCCTGCAAGGCCGCGTCGTCTGCGCCACCAGCGACAAGACCGTCGCCGTCGAGGTCGTGCGGT
TGGCGCCGCACCCGAAGTACAAGCGGCGCATCCGAATCAAGAAGAAGTACCAGGCGCACGATCCGGATAACCAGTTCAAGGTCGGCGACTTCGTGGAGCTTGAGAAATGC
CGCCCGATCAGTAAGACGAAGACGTTCCTCGCCATTCCGGTGCCGGCGAGGAATTCGAAGCAGAAAGCGGCGGAAGCGGAGGCTGGGGATCTAGGGATTCCGTTGGAGTC
TCAACAGCAACAGGTTTAATTTCTGATTGTATTTTGTTGGGACTGTTCTTGTTTGGTGGATTTTGTTTTTCTAATTTCTGGAAACTACAATCGAATTTGTTTTTGGAGTA
CTCATCTCTGCAATTGATGCCTCTGAATTTGAAATGAGAATTGGTATTGATGATGATGGGTTGTTGCTGTTCAAATTCACTTGGAAAATAATGAGATTTGCATTATAATG
TTCGGGATTTACCTAAATTTATAAGTTTAAATTTGATTC
Protein sequenceShow/hide protein sequence
MSATLTPTSLLQIPPLQRPKKQLSISTNFTHGATPLSFLSKPSPSPPPPQTLGFLPSIRAMRSLQGRVVCATSDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFK
VGDFVELEKCRPISKTKTFLAIPVPARNSKQKAAEAEAGDLGIPLESQQQQV