CuGenDBv2

Gene ID	Sed0002806
Organism	Sechium edule (Chayote v1)
Description	selenoprotein H
Genome location	LG03:9823146..9828126
RNA-Seq Expression	Sed0002806
Synteny	Sed0002806
Gene Ontology terms	GO:0005794 - Golgi apparatus (cellular component)
InterPro domains	IPR011893 - Selenoprotein, Rdx-type

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAE8652181.1 hypothetical protein Csa_022241 [Cucumis sativus]

7.4e-57

71.67

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Query:  MAPRKRTKSQEDEAAVAKPAPA----TRRSPRLAANSKVDSAAEELPKSKKAKVSKKRKPKPKPEENGEVEAAENEGEEVDAVSEMVGEDVKCRTVVIEH
        MAPRKRTK+QE++  V KPAPA    TR S RLAANSK D    ELPKSKKAK +        P+ENG+VE  EN+  +VD     + +D K RTVVIEH
Subjt:  MAPRKRTKSQEDEAAVAKPAPA----TRRSPRLAANSKVDSAAEELPKSKKAKVSKKRKPKPKPEENGEVEAAENEGEEVDAVSEMVGEDVKCRTVVIEH

Query:  CKQCQSFKKRAIQVQTGLENGVPGITVRLNPDKPRRGCFEIRSEDGEKFISLLDMKRPFTRMKDLEMEEVISDIVEKLKG
        CKQCQSFKKRAIQVQTGLENGVPGITV LNPDKPRRGCFEIRSEDGEKFISLLDMKRPFTRMK+L M+EVISDI+EK+KG
Subjt:  CKQCQSFKKRAIQVQTGLENGVPGITVRLNPDKPRRGCFEIRSEDGEKFISLLDMKRPFTRMKDLEMEEVISDIVEKLKG

XP_004138763.1 selenoprotein H [Cucumis sativus]

7.4e-57

71.67

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Query:  MAPRKRTKSQEDEAAVAKPAPA----TRRSPRLAANSKVDSAAEELPKSKKAKVSKKRKPKPKPEENGEVEAAENEGEEVDAVSEMVGEDVKCRTVVIEH
        MAPRKRTK+QE++  V KPAPA    TR S RLAANSK D    ELPKSKKAK +        P+ENG+VE  EN+  +VD     + +D K RTVVIEH
Subjt:  MAPRKRTKSQEDEAAVAKPAPA----TRRSPRLAANSKVDSAAEELPKSKKAKVSKKRKPKPKPEENGEVEAAENEGEEVDAVSEMVGEDVKCRTVVIEH

Query:  CKQCQSFKKRAIQVQTGLENGVPGITVRLNPDKPRRGCFEIRSEDGEKFISLLDMKRPFTRMKDLEMEEVISDIVEKLKG
        CKQCQSFKKRAIQVQTGLENGVPGITV LNPDKPRRGCFEIRSEDGEKFISLLDMKRPFTRMK+L M+EVISDI+EK+KG
Subjt:  CKQCQSFKKRAIQVQTGLENGVPGITVRLNPDKPRRGCFEIRSEDGEKFISLLDMKRPFTRMKDLEMEEVISDIVEKLKG

XP_008445096.1 PREDICTED: selenoprotein H [Cucumis melo]

2.5e-57

71.67

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Query:  MAPRKRTKSQEDEAAVAKPAPA----TRRSPRLAANSKVDSAAEELPKSKKAKVSKKRKPKPKPEENGEVEAAENEGEEVDAVSEMVGEDVKCRTVVIEH
        MAPRKR+K+QE+E+A+ KPAPA    TR S RLAANSK D    ELPKSKKAK +        P+ENG+VE  EN+  +VD   E   +D K RTVVIEH
Subjt:  MAPRKRTKSQEDEAAVAKPAPA----TRRSPRLAANSKVDSAAEELPKSKKAKVSKKRKPKPKPEENGEVEAAENEGEEVDAVSEMVGEDVKCRTVVIEH

Query:  CKQCQSFKKRAIQVQTGLENGVPGITVRLNPDKPRRGCFEIRSEDGEKFISLLDMKRPFTRMKDLEMEEVISDIVEKLKG
        CKQCQSFKKRAIQVQTGLENGVPGITV LNPDKPRRGCFEIRSEDG+KFISLLDMKRPFTRMK+L+M+EVISDI+EK+KG
Subjt:  CKQCQSFKKRAIQVQTGLENGVPGITVRLNPDKPRRGCFEIRSEDGEKFISLLDMKRPFTRMKDLEMEEVISDIVEKLKG

XP_022950994.1 selenoprotein H-like isoform X1 [Cucurbita moschata]

8.7e-58

71.11

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Query:  MAPRKRTKSQEDEAAVAKPAPA----TRRSPRLAANSKVDSAAEELPKSKKAKVSKKRKPKPKPEENGEVEAAENEGEEVDAVSEMVGEDVKCRTVVIEH
        MAP+KR+K QEDE AVAKP PA    TRRSPRLA NSK D   EE       K+ K++K K  P+ENG+ E  ENEGE++DA SE +G + K R VVIEH
Subjt:  MAPRKRTKSQEDEAAVAKPAPA----TRRSPRLAANSKVDSAAEELPKSKKAKVSKKRKPKPKPEENGEVEAAENEGEEVDAVSEMVGEDVKCRTVVIEH

Query:  CKQCQSFKKRAIQVQTGLENGVPGITVRLNPDKPRRGCFEIRSEDGEKFISLLDMKRPFTRMKDLEMEEVISDIVEKLKG
        CKQCQSFKKRA++VQ GLE GVPGITV LNPDKPRRGCFEIRSEDGEKFISLLDMKRPFTRMK+L+MEEVISDI+EK+KG
Subjt:  CKQCQSFKKRAIQVQTGLENGVPGITVRLNPDKPRRGCFEIRSEDGEKFISLLDMKRPFTRMKDLEMEEVISDIVEKLKG

XP_023536837.1 selenoprotein H-like [Cucurbita pepo subsp. pepo]

3.0e-58

71.67

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Query:  MAPRKRTKSQEDEAAVAKPAP----ATRRSPRLAANSKVDSAAEELPKSKKAKVSKKRKPKPKPEENGEVEAAENEGEEVDAVSEMVGEDVKCRTVVIEH
        MAP+KR+K QEDE A AKP P    ATRRSPRLAANSK D   EE       K+ K++K K  P+ENG+ E  ENEGE++DA SE +G + K R VVIEH
Subjt:  MAPRKRTKSQEDEAAVAKPAP----ATRRSPRLAANSKVDSAAEELPKSKKAKVSKKRKPKPKPEENGEVEAAENEGEEVDAVSEMVGEDVKCRTVVIEH

Query:  CKQCQSFKKRAIQVQTGLENGVPGITVRLNPDKPRRGCFEIRSEDGEKFISLLDMKRPFTRMKDLEMEEVISDIVEKLKG
        CKQCQSFKKRAI+VQ GLE GVPGITV LNPDKPRRGCFEIRSEDGEKFISLLDMKRPFTRMK+L+MEEVISDI+EK+KG
Subjt:  CKQCQSFKKRAIQVQTGLENGVPGITVRLNPDKPRRGCFEIRSEDGEKFISLLDMKRPFTRMKDLEMEEVISDIVEKLKG

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LPC9 Uncharacterized protein

3.6e-57

71.67

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Query:  MAPRKRTKSQEDEAAVAKPAPA----TRRSPRLAANSKVDSAAEELPKSKKAKVSKKRKPKPKPEENGEVEAAENEGEEVDAVSEMVGEDVKCRTVVIEH
        MAPRKRTK+QE++  V KPAPA    TR S RLAANSK D    ELPKSKKAK +        P+ENG+VE  EN+  +VD     + +D K RTVVIEH
Subjt:  MAPRKRTKSQEDEAAVAKPAPA----TRRSPRLAANSKVDSAAEELPKSKKAKVSKKRKPKPKPEENGEVEAAENEGEEVDAVSEMVGEDVKCRTVVIEH

Query:  CKQCQSFKKRAIQVQTGLENGVPGITVRLNPDKPRRGCFEIRSEDGEKFISLLDMKRPFTRMKDLEMEEVISDIVEKLKG
        CKQCQSFKKRAIQVQTGLENGVPGITV LNPDKPRRGCFEIRSEDGEKFISLLDMKRPFTRMK+L M+EVISDI+EK+KG
Subjt:  CKQCQSFKKRAIQVQTGLENGVPGITVRLNPDKPRRGCFEIRSEDGEKFISLLDMKRPFTRMKDLEMEEVISDIVEKLKG

A0A1S3BBW1 selenoprotein H

1.2e-57

71.67

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Query:  MAPRKRTKSQEDEAAVAKPAPA----TRRSPRLAANSKVDSAAEELPKSKKAKVSKKRKPKPKPEENGEVEAAENEGEEVDAVSEMVGEDVKCRTVVIEH
        MAPRKR+K+QE+E+A+ KPAPA    TR S RLAANSK D    ELPKSKKAK +        P+ENG+VE  EN+  +VD   E   +D K RTVVIEH
Subjt:  MAPRKRTKSQEDEAAVAKPAPA----TRRSPRLAANSKVDSAAEELPKSKKAKVSKKRKPKPKPEENGEVEAAENEGEEVDAVSEMVGEDVKCRTVVIEH

Query:  CKQCQSFKKRAIQVQTGLENGVPGITVRLNPDKPRRGCFEIRSEDGEKFISLLDMKRPFTRMKDLEMEEVISDIVEKLKG
        CKQCQSFKKRAIQVQTGLENGVPGITV LNPDKPRRGCFEIRSEDG+KFISLLDMKRPFTRMK+L+M+EVISDI+EK+KG
Subjt:  CKQCQSFKKRAIQVQTGLENGVPGITVRLNPDKPRRGCFEIRSEDGEKFISLLDMKRPFTRMKDLEMEEVISDIVEKLKG

A0A6J1GHF7 selenoprotein H-like isoform X1

4.2e-58

71.11

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Query:  MAPRKRTKSQEDEAAVAKPAPA----TRRSPRLAANSKVDSAAEELPKSKKAKVSKKRKPKPKPEENGEVEAAENEGEEVDAVSEMVGEDVKCRTVVIEH
        MAP+KR+K QEDE AVAKP PA    TRRSPRLA NSK D   EE       K+ K++K K  P+ENG+ E  ENEGE++DA SE +G + K R VVIEH
Subjt:  MAPRKRTKSQEDEAAVAKPAPA----TRRSPRLAANSKVDSAAEELPKSKKAKVSKKRKPKPKPEENGEVEAAENEGEEVDAVSEMVGEDVKCRTVVIEH

Query:  CKQCQSFKKRAIQVQTGLENGVPGITVRLNPDKPRRGCFEIRSEDGEKFISLLDMKRPFTRMKDLEMEEVISDIVEKLKG
        CKQCQSFKKRA++VQ GLE GVPGITV LNPDKPRRGCFEIRSEDGEKFISLLDMKRPFTRMK+L+MEEVISDI+EK+KG
Subjt:  CKQCQSFKKRAIQVQTGLENGVPGITVRLNPDKPRRGCFEIRSEDGEKFISLLDMKRPFTRMKDLEMEEVISDIVEKLKG

A0A6J1K9R2 selenoprotein H-like

1.1e-53

67.38

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Query:  MAPRKRTKSQEDEAAVA---KPAP----ATRRSPRLAANSK----VDSAAEELPKSKKAKVSKKRKPKPKPEENGEVEAAENEGEEVDAVSEMVGEDVKC
        MAPRKR+K+QED+ A A   KPAP     TRRSPRLA NS     V+ A  ELPKSKK K +        P+ENG+ +   NEGEE+DA S+ + +D K 
Subjt:  MAPRKRTKSQEDEAAVA---KPAP----ATRRSPRLAANSK----VDSAAEELPKSKKAKVSKKRKPKPKPEENGEVEAAENEGEEVDAVSEMVGEDVKC

Query:  RTVVIEHCKQCQSFKKRAIQVQTGLENGVPGITVRLNPDKPRRGCFEIRSEDGEKFISLLDMKRPFTRMKDLEMEEVISDIVEKLKG
        RTVVIE CKQCQSFKKRAIQVQ+GLENGV GITV LNP+KPR+GCFEIRS+DGEKFISLLDMKRPFTRMK+L MEEVISDI+EK+KG
Subjt:  RTVVIEHCKQCQSFKKRAIQVQTGLENGVPGITVRLNPDKPRRGCFEIRSEDGEKFISLLDMKRPFTRMKDLEMEEVISDIVEKLKG

A0A6J1KP64 selenoprotein H-like isoform X1

8.8e-56

69.44

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Query:  MAPRKRTKSQEDEAAVAKPAP----ATRRSPRLAANSKVDSAAEELPKSKKAKVSKKRKPKPKPEENGEVEAAENEGEEVDAVSEMVGEDVKCRTVVIEH
        MAP+KR+K QEDE A AKP P     TRRSPRLAANSK D   EE       K+ KK+K K  P+EN + E  ENEGE++DA SE +G + K R VVIEH
Subjt:  MAPRKRTKSQEDEAAVAKPAP----ATRRSPRLAANSKVDSAAEELPKSKKAKVSKKRKPKPKPEENGEVEAAENEGEEVDAVSEMVGEDVKCRTVVIEH

Query:  CKQCQSFKKRAIQVQTGLENGVPGITVRLNPDKPRRGCFEIRSEDGEKFISLLDMKRPFTRMKDLEMEEVISDIVEKLKG
        CKQCQSFKKRA++VQ GLE GVPGITV LNPDK RRGCFEIRSEDGEKFISLLDMKRPFT+MK+L+MEEVISDI+EK+KG
Subjt:  CKQCQSFKKRAIQVQTGLENGVPGITVRLNPDKPRRGCFEIRSEDGEKFISLLDMKRPFTRMKDLEMEEVISDIVEKLKG

SwissProt top hits

e value

%identity

Alignment

Q3UQA7 Selenoprotein H

6.2e-06

33.33

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Query:  TVVIEHCKQCQSFKKRAIQVQTGLENGVPGITVRLNPDKPRRGCFEI---RSEDGEKFISLLDMKRPFTRMKDLEMEEVISDIVEKL
        TVVIEHC   + + + A  +   L+   P + V++NP KPRRG FE+   RS++    +     K P  ++K  E +EV+ ++ + L
Subjt:  TVVIEHCKQCQSFKKRAIQVQTGLENGVPGITVRLNPDKPRRGCFEI---RSEDGEKFISLLDMKRPFTRMKDLEMEEVISDIVEKL

Q4R5Y4 Selenoprotein H

7.5e-04

29.75

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Query:  KPKPEENGEVEAAENEGEEVDAVSEMVGEDVKCRTVVIEHCKQCQSFKKRAIQVQTGLENGVPGITVRLNPDKPRRGCFEIR--SEDGEKFISLLDMKR-
        + +  E   V AAE +    ++     GE ++  TVVIEHC   + +   A  +   L    P + V++NP KPRRG FE+     DG        +K+ 
Subjt:  KPKPEENGEVEAAENEGEEVDAVSEMVGEDVKCRTVVIEHCKQCQSFKKRAIQVQTGLENGVPGITVRLNPDKPRRGCFEIR--SEDGEKFISLLDMKR-

Query:  PFTRMKDLEMEEVISDIVEKL
        P  ++K  E +EV+ ++ + L
Subjt:  PFTRMKDLEMEEVISDIVEKL

Q8IZQ5 Selenoprotein H

8.0e-06

32.98

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Query:  GEDVKCRTVVIEHCKQCQSFKKRAIQVQTGLENGVPGITVRLNPDKPRRGCFEIR--SEDGEKFISLLDMKR-PFTRMKDLEMEEVISDIVEKL
        GE ++  TVVIEHC   + + + A  +   L    P + V++NP KPRRG FE+     DG        +K+ P  ++K  E +EV+ ++ + L
Subjt:  GEDVKCRTVVIEHCKQCQSFKKRAIQVQTGLENGVPGITVRLNPDKPRRGCFEIR--SEDGEKFISLLDMKR-PFTRMKDLEMEEVISDIVEKL

Arabidopsis top hits

e value

%identity

Alignment

AT2G24440.1 selenium binding

6.1e-33

53.59

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Query:  TRRSPRLAANSKVDSAAEELPKSKKAKVSKKRKPKPKPEENGEVEAAENEGEEVDAVSEMVGEDVKCRTVVIEHCKQCQSFKKRAIQVQTGLENGVPGIT
        T+R    +   K++S  ++  K+ KAK     K K K EE   V+  + E E+ DA  +   +D   + +VIEHCKQC+SFK+RA +V+ GLE  VPGI 
Subjt:  TRRSPRLAANSKVDSAAEELPKSKKAKVSKKRKPKPKPEENGEVEAAENEGEEVDAVSEMVGEDVKCRTVVIEHCKQCQSFKKRAIQVQTGLENGVPGIT

Query:  VRLNPDKPRRGCFEIRSEDGEKFISLLDMKRPFTRMKDLEMEEVISDIVEKLK
        V +NPDKPRRGCFEIR E GE FISLL MKRPFT MK+L MEEVI+DIVEK+K
Subjt:  VRLNPDKPRRGCFEIRSEDGEKFISLLDMKRPFTRMKDLEMEEVISDIVEKLK

AT4G31360.1 selenium binding

9.7e-31

49.15

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Query:  MAPRKRTKSQEDEAAVAKPA--PATRRSPRLAANSKVDSAAEELPKSKKAKVSKKRKPKPKPEENGEVEAAENEGEEVDAVSEMVGEDVKCRTVVIEHCK
        M  R R+++Q++ A  A  A  PAT+++ R   NS +++         +AK  KK +   +PEE  E E  E E  EV        ED     +VIEHCK
Subjt:  MAPRKRTKSQEDEAAVAKPA--PATRRSPRLAANSKVDSAAEELPKSKKAKVSKKRKPKPKPEENGEVEAAENEGEEVDAVSEMVGEDVKCRTVVIEHCK

Query:  QCQSFKKRAIQVQTGLENGVPGITVRLNPDKPRRGCFEIRSEDGEKFISLLDMKRPFTRMKDLEMEEVISDIVEKLK
        QC +FK RAIQV+  LE  VPG+TV LNP+KPRRGCFEIR E G+ FISLL+MKRPF  MK L+MEEVI DI++K+K
Subjt:  QCQSFKKRAIQVQTGLENGVPGITVRLNPDKPRRGCFEIRSEDGEKFISLLDMKRPFTRMKDLEMEEVISDIVEKLK

Sequences

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CDS sequence

Show/hide CDS sequence

ATGGCGCCGAGGAAGAGAACCAAGTCTCAGGAAGACGAGGCGGCGGTGGCCAAGCCGGCTCCGGCGACTCGGAGGTCGCCTCGGCTGGCGGCGAACTCGAAGGTTGATTC
TGCGGCGGAGGAGTTGCCGAAGAGTAAGAAGGCGAAAGTGAGTAAGAAGCGGAAGCCGAAGCCGAAGCCCGAGGAGAATGGGGAGGTGGAAGCGGCCGAGAATGAAGGGG
AGGAAGTTGATGCGGTATCGGAGATGGTTGGGGAGGATGTGAAGTGCAGAACGGTTGTGATTGAACACTGCAAACAGTGCCAATCCTTCAAGAAAAGGGCCATCCAGGTG
CAAACTGGTCTAGAGAATGGTGTTCCTGGAATCACCGTGCGGCTCAACCCTGATAAGCCAAGAAGGGGGTGCTTTGAAATTCGGAGTGAAGACGGGGAGAAGTTTATCAG
TTTGTTGGACATGAAGCGACCTTTTACTCGTATGAAGGATTTGGAGATGGAGGAAGTTATTTCCGATATTGTTGAGAAGTTGAAAGGATAA

mRNA sequence

Show/hide mRNA sequence

GAGACTGGCGCCATTCGTGGGACTTCGTGCCGCCATTTCCTTCCACAGAACAAACCCCGCAAAACTGCGTGGACGACGCACGACTGCTCCATCGACGGCCACAATCCCCT
CTCCCACTCCCGCTCCATCTGGACCGTCGCTTCAAAACCCCACCGCCGATACATATAGCGCGGGAAAATCCACTCCATCCTCTGGATATCACTGCCAACCAACGGCCACG
TTCACACCTCTCTTCCACCAGCTTCCTCTCTGTGTTTTCTAGGGTTTCGGATCTTCTCTCATGGCGCCGAGGAAGAGAACCAAGTCTCAGGAAGACGAGGCGGCGGTGGC
CAAGCCGGCTCCGGCGACTCGGAGGTCGCCTCGGCTGGCGGCGAACTCGAAGGTTGATTCTGCGGCGGAGGAGTTGCCGAAGAGTAAGAAGGCGAAAGTGAGTAAGAAGC
GGAAGCCGAAGCCGAAGCCCGAGGAGAATGGGGAGGTGGAAGCGGCCGAGAATGAAGGGGAGGAAGTTGATGCGGTATCGGAGATGGTTGGGGAGGATGTGAAGTGCAGA
ACGGTTGTGATTGAACACTGCAAACAGTGCCAATCCTTCAAGAAAAGGGCCATCCAGGTGCAAACTGGTCTAGAGAATGGTGTTCCTGGAATCACCGTGCGGCTCAACCC
TGATAAGCCAAGAAGGGGGTGCTTTGAAATTCGGAGTGAAGACGGGGAGAAGTTTATCAGTTTGTTGGACATGAAGCGACCTTTTACTCGTATGAAGGATTTGGAGATGG
AGGAAGTTATTTCCGATATTGTTGAGAAGTTGAAAGGATAATGAAGACCTTCGATAAAAAATCGCCTTATAAGGAGGAAATGTTTTTTGTGGTGGTTTGAAGCTAACCAA
CTAGAGTTTGATGGTGCAAACTTAGCAAATGATCATTGACAATGGCTAATATTGTGTTGGAATTGATTGTAAAGGTAAAGGCATCAGGTATGATGAACAAACACTGGTAG
GGTTATTTTTTGGTTTAAACTTCAAAATGAATGAGTTTTATCTTTGAAGAAGGTTGTCCTTTGTATTACTTCTGTTCTACTATGAGGGGCTTCATGTTGCATCCTTAGAT
TGTGTGAATCATTGGAGTTCTTTGCATATCTGGTTTTTATAACAGATGGTTTTGAAATTCAATTTTGTTGGTTTAATCCACAGGT

Protein sequence

Show/hide protein sequence

MAPRKRTKSQEDEAAVAKPAPATRRSPRLAANSKVDSAAEELPKSKKAKVSKKRKPKPKPEENGEVEAAENEGEEVDAVSEMVGEDVKCRTVVIEHCKQCQSFKKRAIQV
QTGLENGVPGITVRLNPDKPRRGCFEIRSEDGEKFISLLDMKRPFTRMKDLEMEEVISDIVEKLKG

Sed0002806 (gene) of Chayote v1 genome